3TEKA

Thermodbp: a non-canonical single-stranded dna binding protein with a novel structure and mechanism
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
139
structure length
139
Chain Sequence
RGEVRSELITKGEKKLVLIRWNTGKTSAGRLFGRYGPGGRPEFFKLLFGAVAGSLREQFGPDGENIFNRIRDSEKFRETSRELFDGLKKWFFEEAVPRYNLERGDIFMISTELVLDPDTGELLWNRDKTQLIYWIRSDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Thermoproteus tenax
molecule keywords ThermoDBP-single stranded DNA binding protein
total genus 40
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18361 ssDBP_DBD Single stranded DNA-binding protein ss DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.470.50 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 D-amino Acid Aminotransferase; Chain A, domain 1 3tekA00
3TEKA
chains in the Genus database with same CATH superfamily
2GLTA 3CEBA 3RUPA 2COJA 2FPGB 2Q2TA 2DZDA 5LP6F 4EQ5A 3JZFA 2GQSA 2I8CA 4CHIA 4DIMA 4GLWA 3RR5A 3NBZB 3TY5A 2EJ2A 1XK5A 2I87A 3LP8A 4ZHQF 4MV8A 4MV6A 3R9RA 3T54A 3G8CA 3S24A 3PN1A 3VNNA 2HJWA 5BPHA 2HGSA 2R7MA 4XX0B 3WWHA 3ORQA 2NU8B 4I50F 3UFXB 4NZNA 3VPBA 3DTFA 1KJJA 5BWVA 1A0IA 2CZGA 3GIDA 4MV3A 2ZDGA 4O82A 5D1OB 1TA8A 3T9AA 5J2UF 3WWJA 2FPIB 2R7NA 5LYJF 2W6QA 4FFOA 5IYZF 5FR9A 1KUTA 2NUAB 1I1KA 2W70A 3TW7A 4O4IF 1CKNA 4NYEA 4PZ8A 1I7NA 1JKJB 3BA9A 1I1LA 2HGWA 4XYLB 2EJ3A 1C3OA 4EEQA 1DV2A 2Q7DA 3TIGA 1CE8A 5BWRA 5HV6A 1GSHA 3BG5A 1GLVA 1VKZA 1ZAUA 3GLKA 2ZDHA 4TV9F 2R7LA 3JZIA 4YAKB 2YZNA 5EZYF 2Z02A 4K6NA 3LWBA 5BMVF 1VS0A 1IYDA 5I5YA 1KTAA 4DRFA 4PBCA 3RFCA 2W6NA 3HBLA 3RTXA 4O7VA 2HDKA 1EUCB 4O7ZA 3VPDA 5D1PA 2QF7A 5JQGF 5CB4F 3U0GA 2WYOA 2YZMA 5CA0F 5I5SA 3K5IA 2VR1A 5JVDF 5FPOA 1KT8A 2V59A 2OLSA 3N8DA 1Z2NX 2DIKA 4CC6A 4MA0A 1G2WA 5KX5F 1A3GA 3WO1A 4CE5A 1CS0A 5JH7F 5BYBA 1M6VA 2HIVA 3R23A 4IIJF 1CQIB 3LULA 1DV1A 3JRWA 3MWEA 3RV3A 1I2KA 4O4JF 3T9DA 1S68A 5LXTF 3TEKA 4FE2A 5CE8A 1UC8A 2OWOA 4HNUA 3WO0A 2IP4A 1JDBB 1Z2PX 2YL2A 5KKNB 4HN2A 1I7LA 4MV1A 2YW2A 3ETJA 2W6PA 1P8LA 4CKCA 4XZ3B 3HB9A 1A9XA 1KEEA 4Y8VB 4PZ7A 2YZGA 3OUUA 1X9NA 1A0GA 4UCUA 4O7NA 4MAMA 2R82A 4CKBA 2ODTX 4UUGA 5BYAA 3KAKA 3T7AA 5H80A 4TUYF 4DQNA 2COGA 4HQ6A 4O4HF 3Q2OA 1B6SA 2J9GA 1I1MA 4I4TF 2R7KA 1ET0A 4O7WA 5D1OA 5J2TF 1IOVA 4O81A 3U55A 2I80A 4I55F 2VQDA 3BACA 4NZOA 2QB5A 2YRWA 5I47A 4UFZA 2YS6A 3WNZA 4YJ3F 3JSNA 4EGJA 2YS7A 4O7RA 2VPQA 5BWUA 2GPSA 5FNVF 1T36A 3U9TA 4Q4CA 1FVIA 3N6RA 4YJ2F 2PBZA 3OUZA 2CNUA 3PFFA 5D8DA 4PZ6A 3BAAA 2NU6B 5E25A 3QWUA 4EFBA 1IOWA 1A48A 2R85A 4HR7A 1M0WA 4E4TA 1IYEA 2HIXA 2A1HA 4O2BF 4C5CA 5LOVF 1E4EB 1Z2OX 5K2MA 1PK8A 4TM5A 2NU9B 4FFLA 1OBGA 1EHIA 3Q1KA 2X0SA 1GGOA 3MWDA 3K5HA 3VOTA 2X5RA 4MV9A 4YB8B 2DLNA 5DMXA 3UZOA 3W5OA 2HHFA 1CQJB 5GONF 3K3PA 1W96A 3T9CA 2ABJA 2HHFB 3AX6A 4DLKA 4C5AA 3ORRA 2PN1A 4M0JA 2FP4B 1EYZA 2V58A 3LQSA 4O7SA 2R84A 3UQ8A 2ZDQA 2DWCA 2YZLA 4O2AF 3I12A 1AUXA 4HNTA 1XDNA 4IWYA 1DIKA 5I5XA 2W6MA 5K3WA 3NUAA 4FU0A 3U9SA 4CC5A 5DAAA 5C1PA 1M0TA 3WWIA 3V4SA 3R5FA 3JSLA 4O84A 1GSAA 5C1OA 3KREA 1EKFA 2Q2UA 4DAAA 3BA8A 4NZMA 1I2LA 3DTGA 2VUGA 5CA1F 4IWXA 3W1BA 2HGXA 5I5WA 2P0AA 2QK4A 4TVIA 1EKPA 3HT5A 1JLLB 5HBRB 4RCNA 1KJ8A 4C5BA 4CMFA 3SE7A 3TW6A 3VPCA 4UCOA 1ULZA 2XD4A 4ZOLF 2COIA 3SGIA 1B04A 1BNCA 1KJIA 1P16A 4O7YA 4HNVA 1DAAA 1CKOA 4QSHA 3KALA 1VBGA 3R5XA 4XYMB 4ME6A 3UZBA 4EGQA 2W6ZA 2C00A 2DABA 2FPPB 2PVPA 5FPRA 3NC0B 1WR2A 1EZ1A 3DAAA 2CNVA 4UCRA 4E6NA 4FFNA 5LA6F 4LH6A 3E5NA 3KAJA 3VMMA 5C8YF 3RV4A 2HVQA 4CMDA 4O7TA 1OBDA 2EIYA 4M9UA 4EG0A 4YAJB 3GJXB 1BXRA 3GB8B 2R86A 2W71A 1VBHA 1TAEA 4GLXA 4MV4A 5BPFA 4JXUA 5HNEA 3AW8A 5CAEB 2W6OA 4Q4DA 4WHXA 1KJQA 1KC7A 1JDEA 2EJ0A 4IZOA 2V5AA 4EFEA 3HO8A 1C30A 2YYAA 4WBNF 3JRXA 2CFMA 2FB9A 4ZQIA 1WRVA 4O86A 2DAAA 2HG8A 3VA7A 5I5UA 3ETHA 4LH7A 3T9BA 1E4EA 3U54A 1KJ9A 2CNQA 2GPWA 5I5TA 1CKNB 3JZ6A 3QQMA 5JQWA 1V9PA 3UYYA 4L1KA 5CM0A 4UCTA 4O7LA 1EKVA 2HVSA 4UCVA 1DGSA 4YBZB 1PX2A 3V4ZA 2XCLA 2R87A 2NU7B 2YWVA 1CKMA 1UC9A 5DGHA 4FFRA 5BWTA 3GDEA 3TQTA 2YRXA 4O4LF 2Z04A 1W93A 3TINA 4IHJF 2GQRA 5I60A 3NBYB 1B6RA 4FFPA 1EUDB 5I5VA 3T9EA 3TY9A 4CKEA 5DISC 4MV7A 1GSOA 1SCUB 3DF7A 3CSWA 3R5HA 4TV8F 3L2PA 2Y4RA 5JVLA 3MJFA 4O83A 2SCUB 3W1GA 3G8DA 1AUVA 2HVRA 3TIIA 5BWWA 5DGIA 3QFFA 3KYHC 5CR5A 5BWXA 1KBLA 4ZI7F 4UCSA 4FFMA 3BABA 3SNOA 5KS8A 3T9FA 4MA5A 4RZQA 4FGRA 3T99A 3TY8A 2ZGIA
chains in the Genus database with same CATH topology
5I5SA 3CEBA 2A1HA 2COJA 1KT8A 4JXUA 5HNEA 5K2MA 1G2WA 4WHXA 4TM5A 4Q4DA 4CHIA 2EJ0A 4GLWA 1A3GA 4CE5A 5BYBA 2X5RA 2EJ2A 3LULA 3UZOA 2HHFA 3T9CA 2ABJA 3T54A 2HHFB 1I2KA 3T9DA 3TEKA 4M0JA 1WRVA 3WWHA 1UC8A 2DAAA 5CE8A 2HG8A 5I5UA 3LQSA 3T9BA 4NZNA 3DTFA 5I5TA 4HN2A 3JZ6A 4IWYA 5I5XA 3QQMA 5BWVA 5K3WA 3T9AA 4CKCA 3WWJA 3UYYA 5DAAA 5CM0A 3WWIA 1A0GA 1EKVA 5FR9A 4CKBA 2ODTX 4UUGA 5BYAA 1EKFA 3T7AA 1UC9A 5DGHA 1I1KA 4DQNA 4DAAA 4NZMA 5BWTA 1I2LA 2COGA 3TW7A 3DTGA 1I1MA 4IWXA 2HGXA 5I5WA 1I1LA 2HGWA 1ET0A 4TVIA 1EKPA 3HT5A 2EJ3A 4RCNA 4CMFA 2Q7DA 5BWRA 5I60A 2COIA 3BACA 4NZOA 3SGIA 2QB5A 5I47A 3T9EA 5I5VA 1ZAUA 4CKEA 1DAAA 3UZBA 3CSWA 5BWUA 4K6NA 4Q4CA 2Y4RA 2DABA 1IYDA 5I5YA 1KTAA 3DAAA 5BWWA 4PBCA 5DGIA 3PFFA 5CR5A 5BWXA 2HDKA 5E25A 4CMDA 3SNOA 3VPDA 5KS8A 3T9FA 2EIYA 3U0GA 3T99A 2ZGIA 1IYEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TEK A; 
#chains in the Genus database with same CATH topology
 2GLT A;  3CEB A;  3RUP A;  2COJ A;  2FPG B;  2Q2T A;  2DZD A;  5LP6 F;  4EQ5 A;  3JZF A;  2GQS A;  2I8C A;  4CHI A;  4DIM A;  4GLW A;  3RR5 A;  3NBZ B;  3TY5 A;  2EJ2 A;  1XK5 A;  2I87 A;  3LP8 A;  4ZHQ F;  4MV8 A;  4MV6 A;  3R9R A;  3T54 A;  3G8C A;  3S24 A;  3PN1 A;  3VNN A;  2HJW A;  5BPH A;  2HGS A;  2R7M A;  4XX0 B;  3WWH A;  3ORQ A;  2NU8 B;  4I50 F;  3UFX B;  4NZN A;  3VPB A;  3DTF A;  1KJJ A;  5BWV A;  1A0I A;  2CZG A;  3GID A;  4MV3 A;  2ZDG A;  4O82 A;  5D1O B;  1TA8 A;  3T9A A;  5J2U F;  3WWJ A;  2FPI B;  2R7N A;  5LYJ F;  2W6Q A;  4FFO A;  5IYZ F;  5FR9 A;  1KUT A;  2NUA B;  1I1K A;  2W70 A;  3TW7 A;  4O4I F;  1CKN A;  4NYE A;  4PZ8 A;  1I7N A;  1JKJ B;  3BA9 A;  1I1L A;  2HGW A;  4XYL B;  2EJ3 A;  1C3O A;  4EEQ A;  1DV2 A;  2Q7D A;  3TIG A;  1CE8 A;  5BWR A;  5HV6 A;  1GSH A;  3BG5 A;  1GLV A;  1VKZ A;  1ZAU A;  3GLK A;  2ZDH A;  4TV9 F;  2R7L A;  3JZI A;  4YAK B;  2YZN A;  5EZY F;  2Z02 A;  4K6N A;  3LWB A;  5BMV F;  1VS0 A;  1IYD A;  5I5Y A;  1KTA A;  4DRF A;  4PBC A;  3RFC A;  2W6N A;  3HBL A;  3RTX A;  4O7V A;  2HDK A;  1EUC B;  4O7Z A;  3VPD A;  5D1P A;  2QF7 A;  5JQG F;  5CB4 F;  3U0G A;  2WYO A;  2YZM A;  5CA0 F;  5I5S A;  3K5I A;  2VR1 A;  5JVD F;  5FPO A;  1KT8 A;  2V59 A;  2OLS A;  3N8D A;  1Z2N X;  2DIK A;  4CC6 A;  4MA0 A;  1G2W A;  5KX5 F;  1A3G A;  3WO1 A;  4CE5 A;  1CS0 A;  5JH7 F;  5BYB A;  1M6V A;  2HIV A;  3R23 A;  4IIJ F;  1CQI B;  3LUL A;  1DV1 A;  3JRW A;  3MWE A;  3RV3 A;  1I2K A;  4O4J F;  3T9D A;  1S68 A;  5LXT F;  3TEK A;  4FE2 A;  5CE8 A;  1UC8 A;  2OWO A;  4HNU A;  3WO0 A;  2IP4 A;  1JDB B;  1Z2P X;  2YL2 A;  5KKN B;  4HN2 A;  1I7L A;  4MV1 A;  2YW2 A;  3ETJ A;  2W6P A;  1P8L A;  4CKC A;  4XZ3 B;  3HB9 A;  1A9X A;  1KEE A;  4Y8V B;  4PZ7 A;  2YZG A;  3OUU A;  1X9N A;  1A0G A;  4UCU A;  4O7N A;  4MAM A;  2R82 A;  4CKB A;  2ODT X;  4UUG A;  5BYA A;  3KAK A;  3T7A A;  5H80 A;  4TUY F;  4DQN A;  2COG A;  4HQ6 A;  4O4H F;  3Q2O A;  1B6S A;  2J9G A;  1I1M A;  4I4T F;  2R7K A;  1ET0 A;  4O7W A;  5D1O A;  5J2T F;  1IOV A;  4O81 A;  3U55 A;  2I80 A;  4I55 F;  2VQD A;  3BAC A;  4NZO A;  2QB5 A;  2YRW A;  5I47 A;  4UFZ A;  2YS6 A;  3WNZ A;  4YJ3 F;  3JSN A;  4EGJ A;  2YS7 A;  4O7R A;  2VPQ A;  5BWU A;  2GPS A;  5FNV F;  1T36 A;  3U9T A;  4Q4C A;  1FVI A;  3N6R A;  4YJ2 F;  2PBZ A;  3OUZ A;  2CNU A;  3PFF A;  5D8D A;  4PZ6 A;  3BAA A;  2NU6 B;  5E25 A;  3QWU A;  4EFB A;  1IOW A;  1A48 A;  2R85 A;  4HR7 A;  1M0W A;  4E4T A;  1IYE A;  2HIX A;  2A1H A;  4O2B F;  4C5C A;  5LOV F;  1E4E B;  1Z2O X;  5K2M A;  1PK8 A;  4TM5 A;  2NU9 B;  4FFL A;  1OBG A;  1EHI A;  3Q1K A;  2X0S A;  1GGO A;  3MWD A;  3K5H A;  3VOT A;  2X5R A;  4MV9 A;  4YB8 B;  2DLN A;  5DMX A;  3UZO A;  3W5O A;  2HHF A;  1CQJ B;  5GON F;  3K3P A;  1W96 A;  3T9C A;  2ABJ A;  2HHF B;  3AX6 A;  4DLK A;  4C5A A;  3ORR A;  2PN1 A;  4M0J A;  2FP4 B;  1EYZ A;  2V58 A;  3LQS A;  4O7S A;  2R84 A;  3UQ8 A;  2ZDQ A;  2DWC A;  2YZL A;  4O2A F;  3I12 A;  1AUX A;  4HNT A;  1XDN A;  4IWY A;  1DIK A;  5I5X A;  2W6M A;  5K3W A;  3NUA A;  4FU0 A;  3U9S A;  4CC5 A;  5DAA A;  5C1P A;  1M0T A;  3WWI A;  3V4S A;  3R5F A;  3JSL A;  4O84 A;  1GSA A;  5C1O A;  3KRE A;  1EKF A;  2Q2U A;  4DAA A;  3BA8 A;  4NZM A;  1I2L A;  3DTG A;  2VUG A;  5CA1 F;  4IWX A;  3W1B A;  2HGX A;  5I5W A;  2P0A A;  2QK4 A;  4TVI A;  1EKP A;  3HT5 A;  1JLL B;  5HBR B;  4RCN A;  1KJ8 A;  4C5B A;  4CMF A;  3SE7 A;  3TW6 A;  3VPC A;  4UCO A;  1ULZ A;  2XD4 A;  4ZOL F;  2COI A;  3SGI A;  1B04 A;  1BNC A;  1KJI A;  1P16 A;  4O7Y A;  4HNV A;  1DAA A;  1CKO A;  4QSH A;  3KAL A;  1VBG A;  3R5X A;  4XYM B;  4ME6 A;  3UZB A;  4EGQ A;  2W6Z A;  2C00 A;  2DAB A;  2FPP B;  2PVP A;  5FPR A;  3NC0 B;  1WR2 A;  1EZ1 A;  3DAA A;  2CNV A;  4UCR A;  4E6N A;  4FFN A;  5LA6 F;  4LH6 A;  3E5N A;  3KAJ A;  3VMM A;  5C8Y F;  3RV4 A;  2HVQ A;  4CMD A;  4O7T A;  1OBD A;  2EIY A;  4M9U A;  4EG0 A;  4YAJ B;  3GJX B;  1BXR A;  3GB8 B;  2R86 A;  2W71 A;  1VBH A;  1TAE A;  4GLX A;  4MV4 A;  5BPF A;  4JXU A;  5HNE A;  3AW8 A;  5CAE B;  2W6O A;  4Q4D A;  4WHX A;  1KJQ A;  1KC7 A;  1JDE A;  2EJ0 A;  4IZO A;  2V5A A;  4EFE A;  3HO8 A;  1C30 A;  2YYA A;  4WBN F;  3JRX A;  2CFM A;  2FB9 A;  4ZQI A;  1WRV A;  4O86 A;  2DAA A;  2HG8 A;  3VA7 A;  5I5U A;  3ETH A;  4LH7 A;  3T9B A;  1E4E A;  3U54 A;  1KJ9 A;  2CNQ A;  2GPW A;  5I5T A;  1CKN B;  3JZ6 A;  3QQM A;  5JQW A;  1V9P A;  3UYY A;  4L1K A;  5CM0 A;  4UCT A;  4O7L A;  1EKV A;  2HVS A;  4UCV A;  1DGS A;  4YBZ B;  1PX2 A;  3V4Z A;  2XCL A;  2R87 A;  2NU7 B;  2YWV A;  1CKM A;  1UC9 A;  5DGH A;  4FFR A;  5BWT A;  3GDE A;  3TQT A;  2YRX A;  4O4L F;  2Z04 A;  1W93 A;  3TIN A;  4IHJ F;  2GQR A;  5I60 A;  3NBY B;  1B6R A;  4FFP A;  1EUD B;  5I5V A;  3T9E A;  3TY9 A;  4CKE A;  5DIS C;  4MV7 A;  1GSO A;  1SCU B;  3DF7 A;  3CSW A;  3R5H A;  4TV8 F;  3L2P A;  2Y4R A;  5JVL A;  3MJF A;  4O83 A;  2SCU B;  3W1G A;  3G8D A;  1AUV A;  2HVR A;  3TII A;  5BWW A;  5DGI A;  3QFF A;  3KYH C;  5CR5 A;  5BWX A;  1KBL A;  4ZI7 F;  4UCS A;  4FFM A;  3BAB A;  3SNO A;  5KS8 A;  3T9F A;  4MA5 A;  4RZQ A;  4FGR A;  3T99 A;  3TY8 A;  2ZGI A; 
#chains in the Genus database with same CATH homology
 5I5S A;  3CEB A;  2A1H A;  2COJ A;  1KT8 A;  4JXU A;  5HNE A;  5K2M A;  1G2W A;  4WHX A;  4TM5 A;  4Q4D A;  4CHI A;  2EJ0 A;  4GLW A;  1A3G A;  4CE5 A;  5BYB A;  2X5R A;  2EJ2 A;  3LUL A;  3UZO A;  2HHF A;  3T9C A;  2ABJ A;  3T54 A;  2HHF B;  1I2K A;  3T9D A;  3TEK A;  4M0J A;  1WRV A;  3WWH A;  1UC8 A;  2DAA A;  5CE8 A;  2HG8 A;  5I5U A;  3LQS A;  3T9B A;  4NZN A;  3DTF A;  5I5T A;  4HN2 A;  3JZ6 A;  4IWY A;  5I5X A;  3QQM A;  5BWV A;  5K3W A;  3T9A A;  4CKC A;  3WWJ A;  3UYY A;  5DAA A;  5CM0 A;  3WWI A;  1A0G A;  1EKV A;  5FR9 A;  4CKB A;  2ODT X;  4UUG A;  5BYA A;  1EKF A;  3T7A A;  1UC9 A;  5DGH A;  1I1K A;  4DQN A;  4DAA A;  4NZM A;  5BWT A;  1I2L A;  2COG A;  3TW7 A;  3DTG A;  1I1M A;  4IWX A;  2HGX A;  5I5W A;  1I1L A;  2HGW A;  1ET0 A;  4TVI A;  1EKP A;  3HT5 A;  2EJ3 A;  4RCN A;  4CMF A;  2Q7D A;  5BWR A;  5I60 A;  2COI A;  3BAC A;  4NZO A;  3SGI A;  2QB5 A;  5I47 A;  3T9E A;  5I5V A;  1ZAU A;  4CKE A;  1DAA A;  3UZB A;  3CSW A;  5BWU A;  4K6N A;  4Q4C A;  2Y4R A;  2DAB A;  1IYD A;  5I5Y A;  1KTA A;  3DAA A;  5BWW A;  4PBC A;  5DGI A;  3PFF A;  5CR5 A;  5BWX A;  2HDK A;  5E25 A;  4CMD A;  3SNO A;  3VPD A;  5KS8 A;  3T9F A;  2EIY A;  3U0G A;  3T99 A;  2ZGI A;  1IYE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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