3TEKA

Thermodbp: a non-canonical single-stranded dna binding protein with a novel structure and mechanism
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
139
structure length
139
Chain Sequence
RGEVRSELITKGEKKLVLIRWNTGKTSAGRLFGRYGPGGRPEFFKLLFGAVAGSLREQFGPDGENIFNRIRDSEKFRETSRELFDGLKKWFFEEAVPRYNLERGDIFMISTELVLDPDTGELLWNRDKTQLIYWIRSDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Thermoproteus tenax
molecule keywords ThermoDBP-single stranded DNA binding protein
total genus 40
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18361 ssDBP_DBD Single stranded DNA-binding protein ss DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.470.50 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 D-amino Acid Aminotransferase; Chain A, domain 1 3tekA00
3TEKA
chains in the Genus database with same CATH superfamily
1GSAA 4M0JA 4GLXA 5I5XA 3WO1A 3QQMA 1EKPA 3SGIA 1IOVA 2CNVA 1UC9A 2V59A 4CMFA 5I5WA 3T54A 4O81A 2V58A 1WR2A 2HGSA 1CKNB 2FPGB 4CHIA 2PN1A 2CNUA 3DAAA 1CQIB 5J2TF 1I7LA 2PVPA 4O4HF 4WHXA 2HGXA 5J2UF 2GQRA 5D1OB 1KJQA 4EQ5A 5I5UA 3GB8B 2EJ3A 2FP4B 2YZNA 5I60A 4C5BA 4L1KA 4O2BF 3UZBA 2GLTA 4IWYA 4HQ6A 4HR7A 3K5HA 4PBCA 2FPIB 2W6OA 5D1PA 1V9PA 4TV8F 4Q4CA 2R84A 3T9FA 3GDEA 3L2PA 2Q7DA 3U54A 4O7VA 5C1PA 3KAKA 1CKMA 1B6SA 3KALA 5BWUA 4C5CA 3KREA 2HDKA 2W71A 2QK4A 2HVRA 3KAJA 4UCOA 1I2LA 2NU8B 5FPRA 4C5AA 4M9UA 2DZDA 3PN1A 3UQ8A 2R7MA 3GLKA 1Z2OX 3W1GA 4DIMA 4GLWA 3W1BA 1EZ1A 2HIXA 2XCLA 4YAJB 2COJA 3BABA 1M0WA 5KX5F 5BPFA 3TQTA 2VUGA 5CB4F 1I1MA 5HBRB 4MA5A 5K3WA 1VBGA 1TA8A 5BWTA 1TAEA 3NBYB 1CS0A 3SNOA 4HNVA 2W6ZA 1KC7A 4O7LA 5K2MA 3N8DA 4MV8A 5HNEA 2HJWA 4DQNA 3WWHA 3CSWA 2Q2TA 1I2KA 5BMVF 4EGQA 3DTFA 3WWIA 1IYEA 1WRVA 1KJ9A 4Y8VB 2DABA 3R9RA 2YZGA 2I8CA 4CKBA 3U9TA 5DMXA 3TIIA 2HHFA 2HIVA 3ORRA 1E4EA 2W6NA 3T9AA 2HVQA 4CMDA 5BWRA 4YJ2F 2YRWA 2W6MA 3GIDA 3RV3A 2IP4A 4FU0A 1B6RA 2ABJA 3OUUA 3U9SA 3BACA 5LP6F 4O82A 4UCVA 3T9CA 2GQSA 5DAAA 2OLSA 4FFNA 4MV3A 3BA9A 2W6QA 2NU7B 4PZ6A 1M0TA 1SCUB 5GONF 5BWWA 4E6NA 3JSLA 4MV1A 2CFMA 1JDBB 1EYZA 2C00A 3OUZA 4MV4A 3BA8A 3TY5A 2FB9A 1KJIA 5LA6F 3JSNA 1EKFA 2YYAA 4E4TA 1I1KA 2COIA 3RR5A 3U55A 1W96A 2CZGA 2R85A 3AX6A 3T9EA 3UZOA 1UC8A 4O7YA 5FPOA 4IHJF 4RZQA 1DGSA 3JZFA 3TY9A 4FGRA 5CE8A 3KYHC 4UCRA 1OBDA 3DTGA 2EJ2A 1P8LA 3NC0B 4PZ8A 1GSHA 5DGIA 2NU9B 4EFBA 1GLVA 1P16A 2A1HA 3K5IA 4O7TA 3NBZB 2ODTX 3GJXB 4HN2A 2W70A 4RCNA 4TM5A 2YWVA 5BYAA 5LXTF 2COGA 1A9XA 3NUAA 5D1OA 3I12A 5CAEB 4ZHQF 2NU6B 1XDNA 2R82A 1T36A 2YL2A 1C3OA 2I80A 3WWJA 5BWVA 1A0GA 3E5NA 2R7LA 4FFPA 4EFEA 4O4LF 3JRXA 2GPSA 2CNQA 3K3PA 3T7AA 3V4SA 1VBHA 3JZ6A 2YW2A 1CKOA 4JXUA 3W5OA 1VKZA 1Z2NX 1M6VA 4TVIA 5FNVF 3TINA 1BXRA 1DAAA 4FFOA 4HNUA 1XK5A 1JDEA 4XYMB 3T9BA 1A3GA 2DWCA 4I50F 4NZNA 3RTXA 2FPPB 4CKEA 5C1OA 1KBLA 5BYBA 3ETHA 4YBZB 1KEEA 1FVIA 5DGHA 2HHFB 1DV2A 5I5VA 5LYJF 3DF7A 1E4EB 3TW7A 2DAAA 4LH6A 4O7RA 3VMMA 1PX2A 3JRWA 2J9GA 4LH7A 4MV6A 2V5AA 1IOWA 3ORQA 4O7WA 3AW8A 1I1LA 1EUCB 2HG8A 2XD4A 2W6PA 1BNCA 5JQGF 4UUGA 1AUVA 5DISC 3UFXB 4O86A 3N6RA 3JZIA 2R7KA 2YS7A 3WNZA 4HNTA 3WO0A 2R7NA 2X5RA 3HBLA 5LOVF 4TV9F 4O4JF 3TIGA 1JKJB 4YAKB 1Z2PX 2PBZA 3G8CA 3VPDA 5JH7F 1KUTA 4ZI7F 4FE2A 4UCUA 3G8DA 4K6NA 3CEBA 3VOTA 2VR1A 1EUDB 3T9DA 4ZOLF 3HB9A 4ZQIA 4CE5A 1KTAA 5CR5A 3S24A 2EIYA 3SE7A 1CE8A 5CA1F 2EJ0A 3TEKA 5I5YA 1EHIA 4XYLB 1ET0A 4EG0A 2ZDHA 4DRFA 2ZDQA 1A48A 3MJFA 5JQWA 4O84A 1IYDA 2Z02A 3BAAA 3LP8A 2OWOA 2YS6A 2R87A 2GPWA 1AUXA 1KJ8A 1A0IA 1PK8A 4PZ7A 4IWXA 3T99A 3TW6A 4IZOA 1VS0A 1ZAUA 2YRXA 2WYOA 4MAMA 3LWBA 4O7NA 4ME6A 1CKNA 2QF7A 4NZMA 5JVDF 3QWUA 1G2WA 4CKCA 2VPQA 1CQJB 5EZYF 1DIKA 1C30A 3VNNA 1KJJA 2ZDGA 3UYYA 2NUAB 4TUYF 4O83A 3R5HA 4MA0A 5KKNB 4UCSA 4DAAA 3HO8A 1EKVA 1W93A 1OBGA 2YZMA 4I4TF 3RV4A 4NZOA 1ULZA 5C8YF 4O4IF 5E25A 5IYZF 2R86A 3U0GA 1B04A 4UFZA 2I87A 2HGWA 1S68A 4CC6A 5BPHA 4EEQA 4MV7A 5BWXA 4CC5A 3ETJA 1I7NA 3Q2OA 2QB5A 4XZ3B 4FFRA 2VQDA 3LULA 3R5FA 3Q1KA 3MWEA 3R5XA 5I47A 4IIJF 3QFFA 3RFCA 4WBNF 4O7SA 1JLLB 5KS8A 2DLNA 3VPCA 2ZGIA 4DLKA 2Y4RA 5I5TA 2P0AA 2X0SA 3LQSA 3V4ZA 2DIKA 5CA0F 5D8DA 1GGOA 1KT8A 5FR9A 3BG5A 3HT5A 1GSOA 4YJ3F 5H80A 2Z04A 4FFLA 4FFMA 5CM0A 2Q2UA 5HV6A 4Q4DA 1X9NA 5I5SA 2HVSA 4QSHA 3VA7A 3RUPA 4I55F 4EGJA 4XX0B 3MWDA 3R23A 3VPBA 5JVLA 3PFFA 4MV9A 2YZLA 4O2AF 3TY8A 4UCTA 2SCUB 1DV1A 4O7ZA 4YB8B 4NYEA
chains in the Genus database with same CATH topology
2DABA 4M0JA 4JXUA 4CKBA 4TVIA 5I5XA 3QQMA 1EKPA 3SGIA 2HHFA 3UYYA 1DAAA 1UC9A 3T9AA 4CMFA 5I5WA 3T54A 4CMDA 3T9BA 4DAAA 5BWRA 1A3GA 1EKVA 4CHIA 3DAAA 4NZNA 2ABJA 4CKEA 3BACA 5BYBA 4WHXA 4NZOA 2HGXA 5DGHA 3T9CA 2HHFB 5I5VA 5DAAA 3TW7A 2DAAA 5E25A 5I5UA 3U0GA 2EJ3A 5I60A 2HGWA 5BWXA 3UZBA 4IWYA 5BWWA 4PBCA 1I1LA 2QB5A 2HG8A 4Q4CA 3LULA 4UUGA 3T9FA 2Q7DA 1EKFA 5BWUA 5I47A 1I1KA 2X5RA 2HDKA 2COIA 3T9EA 3VPDA 5KS8A 3UZOA 1I2LA 1UC8A 2ZGIA 4K6NA 3CEBA 5CE8A 2Y4RA 5I5TA 3T9DA 3DTGA 2EJ2A 4GLWA 4CE5A 1KTAA 5CR5A 5DGIA 2EIYA 3LQSA 2COJA 2A1HA 1KT8A 5FR9A 3HT5A 2EJ0A 2ODTX 3TEKA 5CM0A 5I5YA 4HN2A 1I1MA 5K3WA 4RCNA 1ET0A 4TM5A 5BYAA 5BWTA 4Q4DA 2COGA 5I5SA 3SNOA 1IYDA 5K2MA 5HNEA 4DQNA 3WWHA 3PFFA 3WWJA 3CSWA 4IWXA 3T99A 5BWVA 1A0GA 1I2KA 1ZAUA 3DTFA 4NZMA 3WWIA 1IYEA 1WRVA 1G2WA 4CKCA 3T7AA 3JZ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TEK A; 
#chains in the Genus database with same CATH topology
 1GSA A;  4M0J A;  4GLX A;  5I5X A;  3WO1 A;  3QQM A;  1EKP A;  3SGI A;  1IOV A;  2CNV A;  1UC9 A;  2V59 A;  4CMF A;  5I5W A;  3T54 A;  4O81 A;  2V58 A;  1WR2 A;  2HGS A;  1CKN B;  2FPG B;  4CHI A;  2PN1 A;  2CNU A;  3DAA A;  1CQI B;  5J2T F;  1I7L A;  2PVP A;  4O4H F;  4WHX A;  2HGX A;  5J2U F;  2GQR A;  5D1O B;  1KJQ A;  4EQ5 A;  5I5U A;  3GB8 B;  2EJ3 A;  2FP4 B;  2YZN A;  5I60 A;  4C5B A;  4L1K A;  4O2B F;  3UZB A;  2GLT A;  4IWY A;  4HQ6 A;  4HR7 A;  3K5H A;  4PBC A;  2FPI B;  2W6O A;  5D1P A;  1V9P A;  4TV8 F;  4Q4C A;  2R84 A;  3T9F A;  3GDE A;  3L2P A;  2Q7D A;  3U54 A;  4O7V A;  5C1P A;  3KAK A;  1CKM A;  1B6S A;  3KAL A;  5BWU A;  4C5C A;  3KRE A;  2HDK A;  2W71 A;  2QK4 A;  2HVR A;  3KAJ A;  4UCO A;  1I2L A;  2NU8 B;  5FPR A;  4C5A A;  4M9U A;  2DZD A;  3PN1 A;  3UQ8 A;  2R7M A;  3GLK A;  1Z2O X;  3W1G A;  4DIM A;  4GLW A;  3W1B A;  1EZ1 A;  2HIX A;  2XCL A;  4YAJ B;  2COJ A;  3BAB A;  1M0W A;  5KX5 F;  5BPF A;  3TQT A;  2VUG A;  5CB4 F;  1I1M A;  5HBR B;  4MA5 A;  5K3W A;  1VBG A;  1TA8 A;  5BWT A;  1TAE A;  3NBY B;  1CS0 A;  3SNO A;  4HNV A;  2W6Z A;  1KC7 A;  4O7L A;  5K2M A;  3N8D A;  4MV8 A;  5HNE A;  2HJW A;  4DQN A;  3WWH A;  3CSW A;  2Q2T A;  1I2K A;  5BMV F;  4EGQ A;  3DTF A;  3WWI A;  1IYE A;  1WRV A;  1KJ9 A;  4Y8V B;  2DAB A;  3R9R A;  2YZG A;  2I8C A;  4CKB A;  3U9T A;  5DMX A;  3TII A;  2HHF A;  2HIV A;  3ORR A;  1E4E A;  2W6N A;  3T9A A;  2HVQ A;  4CMD A;  5BWR A;  4YJ2 F;  2YRW A;  2W6M A;  3GID A;  3RV3 A;  2IP4 A;  4FU0 A;  1B6R A;  2ABJ A;  3OUU A;  3U9S A;  3BAC A;  5LP6 F;  4O82 A;  4UCV A;  3T9C A;  2GQS A;  5DAA A;  2OLS A;  4FFN A;  4MV3 A;  3BA9 A;  2W6Q A;  2NU7 B;  4PZ6 A;  1M0T A;  1SCU B;  5GON F;  5BWW A;  4E6N A;  3JSL A;  4MV1 A;  2CFM A;  1JDB B;  1EYZ A;  2C00 A;  3OUZ A;  4MV4 A;  3BA8 A;  3TY5 A;  2FB9 A;  1KJI A;  5LA6 F;  3JSN A;  1EKF A;  2YYA A;  4E4T A;  1I1K A;  2COI A;  3RR5 A;  3U55 A;  1W96 A;  2CZG A;  2R85 A;  3AX6 A;  3T9E A;  3UZO A;  1UC8 A;  4O7Y A;  5FPO A;  4IHJ F;  4RZQ A;  1DGS A;  3JZF A;  3TY9 A;  4FGR A;  5CE8 A;  3KYH C;  4UCR A;  1OBD A;  3DTG A;  2EJ2 A;  1P8L A;  3NC0 B;  4PZ8 A;  1GSH A;  5DGI A;  2NU9 B;  4EFB A;  1GLV A;  1P16 A;  2A1H A;  3K5I A;  4O7T A;  3NBZ B;  2ODT X;  3GJX B;  4HN2 A;  2W70 A;  4RCN A;  4TM5 A;  2YWV A;  5BYA A;  5LXT F;  2COG A;  1A9X A;  3NUA A;  5D1O A;  3I12 A;  5CAE B;  4ZHQ F;  2NU6 B;  1XDN A;  2R82 A;  1T36 A;  2YL2 A;  1C3O A;  2I80 A;  3WWJ A;  5BWV A;  1A0G A;  3E5N A;  2R7L A;  4FFP A;  4EFE A;  4O4L F;  3JRX A;  2GPS A;  2CNQ A;  3K3P A;  3T7A A;  3V4S A;  1VBH A;  3JZ6 A;  2YW2 A;  1CKO A;  4JXU A;  3W5O A;  1VKZ A;  1Z2N X;  1M6V A;  4TVI A;  5FNV F;  3TIN A;  1BXR A;  1DAA A;  4FFO A;  4HNU A;  1XK5 A;  1JDE A;  4XYM B;  3T9B A;  1A3G A;  2DWC A;  4I50 F;  4NZN A;  3RTX A;  2FPP B;  4CKE A;  5C1O A;  1KBL A;  5BYB A;  3ETH A;  4YBZ B;  1KEE A;  1FVI A;  5DGH A;  2HHF B;  1DV2 A;  5I5V A;  5LYJ F;  3DF7 A;  1E4E B;  3TW7 A;  2DAA A;  4LH6 A;  4O7R A;  3VMM A;  1PX2 A;  3JRW A;  2J9G A;  4LH7 A;  4MV6 A;  2V5A A;  1IOW A;  3ORQ A;  4O7W A;  3AW8 A;  1I1L A;  1EUC B;  2HG8 A;  2XD4 A;  2W6P A;  1BNC A;  5JQG F;  4UUG A;  1AUV A;  5DIS C;  3UFX B;  4O86 A;  3N6R A;  3JZI A;  2R7K A;  2YS7 A;  3WNZ A;  4HNT A;  3WO0 A;  2R7N A;  2X5R A;  3HBL A;  5LOV F;  4TV9 F;  4O4J F;  3TIG A;  1JKJ B;  4YAK B;  1Z2P X;  2PBZ A;  3G8C A;  3VPD A;  5JH7 F;  1KUT A;  4ZI7 F;  4FE2 A;  4UCU A;  3G8D A;  4K6N A;  3CEB A;  3VOT A;  2VR1 A;  1EUD B;  3T9D A;  4ZOL F;  3HB9 A;  4ZQI A;  4CE5 A;  1KTA A;  5CR5 A;  3S24 A;  2EIY A;  3SE7 A;  1CE8 A;  5CA1 F;  2EJ0 A;  3TEK A;  5I5Y A;  1EHI A;  4XYL B;  1ET0 A;  4EG0 A;  2ZDH A;  4DRF A;  2ZDQ A;  1A48 A;  3MJF A;  5JQW A;  4O84 A;  1IYD A;  2Z02 A;  3BAA A;  3LP8 A;  2OWO A;  2YS6 A;  2R87 A;  2GPW A;  1AUX A;  1KJ8 A;  1A0I A;  1PK8 A;  4PZ7 A;  4IWX A;  3T99 A;  3TW6 A;  4IZO A;  1VS0 A;  1ZAU A;  2YRX A;  2WYO A;  4MAM A;  3LWB A;  4O7N A;  4ME6 A;  1CKN A;  2QF7 A;  4NZM A;  5JVD F;  3QWU A;  1G2W A;  4CKC A;  2VPQ A;  1CQJ B;  5EZY F;  1DIK A;  1C30 A;  3VNN A;  1KJJ A;  2ZDG A;  3UYY A;  2NUA B;  4TUY F;  4O83 A;  3R5H A;  4MA0 A;  5KKN B;  4UCS A;  4DAA A;  3HO8 A;  1EKV A;  1W93 A;  1OBG A;  2YZM A;  4I4T F;  3RV4 A;  4NZO A;  1ULZ A;  5C8Y F;  4O4I F;  5E25 A;  5IYZ F;  2R86 A;  3U0G A;  1B04 A;  4UFZ A;  2I87 A;  2HGW A;  1S68 A;  4CC6 A;  5BPH A;  4EEQ A;  4MV7 A;  5BWX A;  4CC5 A;  3ETJ A;  1I7N A;  3Q2O A;  2QB5 A;  4XZ3 B;  4FFR A;  2VQD A;  3LUL A;  3R5F A;  3Q1K A;  3MWE A;  3R5X A;  5I47 A;  4IIJ F;  3QFF A;  3RFC A;  4WBN F;  4O7S A;  1JLL B;  5KS8 A;  2DLN A;  3VPC A;  2ZGI A;  4DLK A;  2Y4R A;  5I5T A;  2P0A A;  2X0S A;  3LQS A;  3V4Z A;  2DIK A;  5CA0 F;  5D8D A;  1GGO A;  1KT8 A;  5FR9 A;  3BG5 A;  3HT5 A;  1GSO A;  4YJ3 F;  5H80 A;  2Z04 A;  4FFL A;  4FFM A;  5CM0 A;  2Q2U A;  5HV6 A;  4Q4D A;  1X9N A;  5I5S A;  2HVS A;  4QSH A;  3VA7 A;  3RUP A;  4I55 F;  4EGJ A;  4XX0 B;  3MWD A;  3R23 A;  3VPB A;  5JVL A;  3PFF A;  4MV9 A;  2YZL A;  4O2A F;  3TY8 A;  4UCT A;  2SCU B;  1DV1 A;  4O7Z A;  4YB8 B;  4NYE A; 
#chains in the Genus database with same CATH homology
 2DAB A;  4M0J A;  4JXU A;  4CKB A;  4TVI A;  5I5X A;  3QQM A;  1EKP A;  3SGI A;  2HHF A;  3UYY A;  1DAA A;  1UC9 A;  3T9A A;  4CMF A;  5I5W A;  3T54 A;  4CMD A;  3T9B A;  4DAA A;  5BWR A;  1A3G A;  1EKV A;  4CHI A;  3DAA A;  4NZN A;  2ABJ A;  4CKE A;  3BAC A;  5BYB A;  4WHX A;  4NZO A;  2HGX A;  5DGH A;  3T9C A;  2HHF B;  5I5V A;  5DAA A;  3TW7 A;  2DAA A;  5E25 A;  5I5U A;  3U0G A;  2EJ3 A;  5I60 A;  2HGW A;  5BWX A;  3UZB A;  4IWY A;  5BWW A;  4PBC A;  1I1L A;  2QB5 A;  2HG8 A;  4Q4C A;  3LUL A;  4UUG A;  3T9F A;  2Q7D A;  1EKF A;  5BWU A;  5I47 A;  1I1K A;  2X5R A;  2HDK A;  2COI A;  3T9E A;  3VPD A;  5KS8 A;  3UZO A;  1I2L A;  1UC8 A;  2ZGI A;  4K6N A;  3CEB A;  5CE8 A;  2Y4R A;  5I5T A;  3T9D A;  3DTG A;  2EJ2 A;  4GLW A;  4CE5 A;  1KTA A;  5CR5 A;  5DGI A;  2EIY A;  3LQS A;  2COJ A;  2A1H A;  1KT8 A;  5FR9 A;  3HT5 A;  2EJ0 A;  2ODT X;  3TEK A;  5CM0 A;  5I5Y A;  4HN2 A;  1I1M A;  5K3W A;  4RCN A;  1ET0 A;  4TM5 A;  5BYA A;  5BWT A;  4Q4D A;  2COG A;  5I5S A;  3SNO A;  1IYD A;  5K2M A;  5HNE A;  4DQN A;  3WWH A;  3PFF A;  3WWJ A;  3CSW A;  4IWX A;  3T99 A;  5BWV A;  1A0G A;  1I2K A;  1ZAU A;  3DTF A;  4NZM A;  3WWI A;  1IYE A;  1WRV A;  1G2W A;  4CKC A;  3T7A A;  3JZ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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