1DULA

Structure of the ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
69
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA DOMAIN IV
publication title Crystal structure of the ribonucleoprotein core of the signal recognition particle.
pubmed doi rcsb
source organism Escherichia coli
total genus 20
structure length 69
sequence length 69
ec nomenclature
pdb deposition date 2000-01-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 1dulA00
2PXKA 2XXAA 3NDBB 2PXDA 2PXLA 1HQ1A 2PXUA 5GAHi 2PXTA 3DM5A 2PXEA 3KL4A 2V3CC 5GAGi 3LQXA 1MFQC 2PXPA 2JQEA 1QZXA 2PXBA 2PXQA 2FFHA 2PXFA 2PXVA 1DULA 1QB2A
chains in the Genus database with same CATH superfamily
4DE9A 1PNRA 3PE5A 1HQ1A 1POUA 1DWKA 3QOXA 2VEOA 1ZUGA 2FJRA 2LNMA 4ER7A 4JCYA 2MQKA 3TEPA 2L8NA 2GZUA 2XI8A 3GBFA 3R09A 4I6UA 3SCHA 3ZKCA 1OCTC 3ZPXA 2PXLA 2XIUA 1NEQA 3OMTA 3G0TA 1ADRA 1BDHA 1LCDA 4EKIA 3KZ3A 4MCXA 2V3CC 5GAGi 1QP0A 4NDWA 2XSDC 1JWLA 2PXPA 2XXPA 1JFSA 4X4IA 4ER0A 1QP7A 4HRAA 3BD1A 1DULA 2KZ8A 1ZZCA 2GRMA 1UXCA 4X4EA 1O4XA 2L49A 2MEZA 2HFZA 4EKGA 3QWGA 2A6CA 3O9XA 4Z5DA 4IWRA 3VK0A 3DNVB 4GQMA 1S7EA 2BNMA 4PU7A 3LQXA 1DW9A 3IVPA 2KEKA 2AXVA 3NZLA 3L1PA 1RZRD 2XJ3A 4ER5A 5DSXA 2M4HA 5DT2A 1AU7A 1ZS4A 3GZCA 1MFQC 2J7UA 2PUCA 2HCSA 4X4HA 4F8DA 1LLIA 2LYSA 1B0NA 3JXDL 4X4GA 3FYMA 3NDBB 2PXDA 2O38A 3NXHA 2PXUA 4I6TA 3A9XA 2YBDA 3R1FA 1IC8A 2EF8A 3GZDA 1ZPQA 3ZHIA 3TFLA 2BJCA 2AW6A 3OQNA 1JH9A 4Z58A 2JQEA 4EQZA 4J1XA 4JQDA 2J7WA 3BS3A 4YG7B 4X4DA 2AWIA 2L1PA 5DTQA 4DE8A 3TELA 3G7DA 1E3OC 2IVQA 2PUGA 2PUEA 3F6WA 3OKZA 1R69A 2LCVA 2PUBA 2PXTA 4Z59A 4PU4C 2AXZA 2KEJA 4Z5CA 3SCFA 4X4BA 2ICTA 1GT0C 5DTRA 2GRLA 2R63A 1CJGA 1QQAA 4OBMA 3OQOA 3SX0A 3HZIB 2PUAA 4YG1A 3LFPA 3ZHMA 2IVBA 2JVLA 4YBAA 3U3WA 3ME5A 1WH6A 1ZZ7A 2PXQA 2LYPA 1ZAYA 2B5AA 4JCXA 1RIOA 4Z5HA 4Y42A 3KJXA 5DRTA 1U2ZA 2PPXA 1Y9QA 3EUSA 4YG4A 4WVLA 3MEJA 3QFIA 1RZSA 1BDIA 1QZXA 4EZIA 1ZZ6A 1PERL 1RZRA 2AUWA 1SQ8A 3MLFA 5JUWA 3CLCA 3SR4A 1NW3A 2IU7A 2LYJA 3OQMA 1X57A 3D1NI 1JFTA 3CECA 1PRUA 3S8QA 2XCJA 2EWTA 2PXKA 1EFAA 2JCGA 5K98B 3JXBC 2KPJA 1PRVA 1L1MA 2PXEA 3VWSA 4ER6A 2HCNA 1LCCA 1CQTA 2BNNA 2CROA 2PXFA 2AXUA 2EBYA 5DTMA 4FN3A 1XWRA 2ODRD 3CROL 2MXDA 1Y7YA 1WIZA 1QQBA 4PU3C 2LLWA 3B7HA 1RPEL 3LISA 3BDNA 1VPWA 3FYAA 3KL4A 2XXQA 2CSFA 3KXAA 2ICPA 3PXPA 2WIUB 2WUSR 4GHJA 2PXBA 2OR1L 2PUDA 2PUFA 3UFDA 2O49A 1LMB3 4I8TA 2HINA 1QP4A 2O4AA 3GN5A 1OSLA 1WH8A 3GUUA 3FMYA 4J1WA 3OP9A 4PU8A 2FFHA 4ER3A 2IV1A 1ZVVA 4IA8A 3QQ6A 1R63A 3H5TA 3TRBA 2PE5A 4X4FA 4YARA 1ZZBA 1ZZ9A 5DRYA 3SCGA 2D5VA 4I6RA 2XXAA 2PIJA 2IVGA 1QPZA 5A7LA 2LYQA 3GN5B 3RZZA 3QOWA 3M9LA 3GZDC 3F51A 2LYRA 1PRAA 1ZZ8A 2OFYA 4Q2JA 3G5GA 2KEIA 3QYXA 4OB4A 2LLVA 4EK9A 3A9YA 2BNOA 3A9ZA 2H8RA 1LQCA 4MCTA 3OWQA 3NROA 2HSGA 2R1JL 2PXVA 1WETA 4X4CA 3QF3A 3F52A 3UWPA 5GAHi 1UTXA 1YSEA 2IUOA 1NERA 1X2LA 3DM5A 4FBIA 4IVZA 4O8BA 1HF0A 2LYLA 1UXDA 3JXCL 2LYKA 1QB2A
chains in the Genus database with same CATH topology
2PXKA 2XXAA 3NDBB 2PXDA 2PXLA 1HQ1A 2PXUA 5GAHi 2PXTA 3DM5A 2PXEA 3KL4A 2V3CC 5GAGi 3LQXA 1MFQC 2PXPA 2JQEA 1QZXA 2PXBA 2PXQA 2FFHA 2PXFA 2PXVA 1DULA 1QB2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXK A;  2XXA A;  3NDB B;  2PXD A;  2PXL A;  1HQ1 A;  2PXU A;  5GAH i;  2PXT A;  3DM5 A;  2PXE A;  3KL4 A;  2V3C C;  5GAG i;  3LQX A;  1MFQ C;  2PXP A;  2JQE A;  1QZX A;  2PXB A;  2PXQ A;  2FFH A;  2PXF A;  2PXV A;  1DUL A;  1QB2 A; 
#chains in the Genus database with same CATH topology
 4DE9 A;  1PNR A;  3PE5 A;  1HQ1 A;  1POU A;  1DWK A;  3QOX A;  2VEO A;  1ZUG A;  2FJR A;  2LNM A;  4ER7 A;  4JCY A;  2MQK A;  3TEP A;  2L8N A;  2GZU A;  2XI8 A;  3GBF A;  3R09 A;  4I6U A;  3SCH A;  3ZKC A;  1OCT C;  3ZPX A;  2PXL A;  2XIU A;  1NEQ A;  3OMT A;  3G0T A;  1ADR A;  1BDH A;  1LCD A;  4EKI A;  3KZ3 A;  4MCX A;  2V3C C;  5GAG i;  1QP0 A;  4NDW A;  2XSD C;  1JWL A;  2PXP A;  2XXP A;  1JFS A;  4X4I A;  4ER0 A;  1QP7 A;  4HRA A;  3BD1 A;  1DUL A;  2KZ8 A;  1ZZC A;  2GRM A;  1UXC A;  4X4E A;  1O4X A;  2L49 A;  2MEZ A;  2HFZ A;  4EKG A;  3QWG A;  2A6C A;  3O9X A;  4Z5D A;  4IWR A;  3VK0 A;  3DNV B;  4GQM A;  1S7E A;  2BNM A;  4PU7 A;  3LQX A;  1DW9 A;  3IVP A;  2KEK A;  2AXV A;  3NZL A;  3L1P A;  1RZR D;  2XJ3 A;  4ER5 A;  5DSX A;  2M4H A;  5DT2 A;  1AU7 A;  1ZS4 A;  3GZC A;  1MFQ C;  2J7U A;  2PUC A;  2HCS A;  4X4H A;  4F8D A;  1LLI A;  2LYS A;  1B0N A;  3JXD L;  4X4G A;  3FYM A;  3NDB B;  2PXD A;  2O38 A;  3NXH A;  2PXU A;  4I6T A;  3A9X A;  2YBD A;  3R1F A;  1IC8 A;  2EF8 A;  3GZD A;  1ZPQ A;  3ZHI A;  3TFL A;  2BJC A;  2AW6 A;  3OQN A;  1JH9 A;  4Z58 A;  2JQE A;  4EQZ A;  4J1X A;  4JQD A;  2J7W A;  3BS3 A;  4YG7 B;  4X4D A;  2AWI A;  2L1P A;  5DTQ A;  4DE8 A;  3TEL A;  3G7D A;  1E3O C;  2IVQ A;  2PUG A;  2PUE A;  3F6W A;  3OKZ A;  1R69 A;  2LCV A;  2PUB A;  2PXT A;  4Z59 A;  4PU4 C;  2AXZ A;  2KEJ A;  4Z5C A;  3SCF A;  4X4B A;  2ICT A;  1GT0 C;  5DTR A;  2GRL A;  2R63 A;  1CJG A;  1QQA A;  4OBM A;  3OQO A;  3SX0 A;  3HZI B;  2PUA A;  4YG1 A;  3LFP A;  3ZHM A;  2IVB A;  2JVL A;  4YBA A;  3U3W A;  3ME5 A;  1WH6 A;  1ZZ7 A;  2PXQ A;  2LYP A;  1ZAY A;  2B5A A;  4JCX A;  1RIO A;  4Z5H A;  4Y42 A;  3KJX A;  5DRT A;  1U2Z A;  2PPX A;  1Y9Q A;  3EUS A;  4YG4 A;  4WVL A;  3MEJ A;  3QFI A;  1RZS A;  1BDI A;  1QZX A;  4EZI A;  1ZZ6 A;  1PER L;  1RZR A;  2AUW A;  1SQ8 A;  3MLF A;  5JUW A;  3CLC A;  3SR4 A;  1NW3 A;  2IU7 A;  2LYJ A;  3OQM A;  1X57 A;  3D1N I;  1JFT A;  3CEC A;  1PRU A;  3S8Q A;  2XCJ A;  2EWT A;  2PXK A;  1EFA A;  2JCG A;  5K98 B;  3JXB C;  2KPJ A;  1PRV A;  1L1M A;  2PXE A;  3VWS A;  4ER6 A;  2HCN A;  1LCC A;  1CQT A;  2BNN A;  2CRO A;  2PXF A;  2AXU A;  2EBY A;  5DTM A;  4FN3 A;  1XWR A;  2ODR D;  3CRO L;  2MXD A;  1Y7Y A;  1WIZ A;  1QQB A;  4PU3 C;  2LLW A;  3B7H A;  1RPE L;  3LIS A;  3BDN A;  1VPW A;  3FYA A;  3KL4 A;  2XXQ A;  2CSF A;  3KXA A;  2ICP A;  3PXP A;  2WIU B;  2WUS R;  4GHJ A;  2PXB A;  2OR1 L;  2PUD A;  2PUF A;  3UFD A;  2O49 A;  1LMB 3;  4I8T A;  2HIN A;  1QP4 A;  2O4A A;  3GN5 A;  1OSL A;  1WH8 A;  3GUU A;  3FMY A;  4J1W A;  3OP9 A;  4PU8 A;  2FFH A;  4ER3 A;  2IV1 A;  1ZVV A;  4IA8 A;  3QQ6 A;  1R63 A;  3H5T A;  3TRB A;  2PE5 A;  4X4F A;  4YAR A;  1ZZB A;  1ZZ9 A;  5DRY A;  3SCG A;  2D5V A;  4I6R A;  2XXA A;  2PIJ A;  2IVG A;  1QPZ A;  5A7L A;  2LYQ A;  3GN5 B;  3RZZ A;  3QOW A;  3M9L A;  3GZD C;  3F51 A;  2LYR A;  1PRA A;  1ZZ8 A;  2OFY A;  4Q2J A;  3G5G A;  2KEI A;  3QYX A;  4OB4 A;  2LLV A;  4EK9 A;  3A9Y A;  2BNO A;  3A9Z A;  2H8R A;  1LQC A;  4MCT A;  3OWQ A;  3NRO A;  2HSG A;  2R1J L;  2PXV A;  1WET A;  4X4C A;  3QF3 A;  3F52 A;  3UWP A;  5GAH i;  1UTX A;  1YSE A;  2IUO A;  1NER A;  1X2L A;  3DM5 A;  4FBI A;  4IVZ A;  4O8B A;  1HF0 A;  2LYL A;  1UXD A;  3JXC L;  2LYK A;  1QB2 A; 
#chains in the Genus database with same CATH homology
 2PXK A;  2XXA A;  3NDB B;  2PXD A;  2PXL A;  1HQ1 A;  2PXU A;  5GAH i;  2PXT A;  3DM5 A;  2PXE A;  3KL4 A;  2V3C C;  5GAG i;  3LQX A;  1MFQ C;  2PXP A;  2JQE A;  1QZX A;  2PXB A;  2PXQ A;  2FFH A;  2PXF A;  2PXV A;  1DUL A;  1QB2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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