3PE5A

Three-dimensional structure of protein a7vv38_9clot from clostridium leptum dsm 753, northeast structural genomics consortium target qlr103
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
278
structure length
278
Chain Sequence
TLIKDPMVLNIMLFGSDERPGETGYGRSDTMMLLSIDNRNKKLKLTSFMRDTYVNVPEWGDTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVDTLGGIEVEMTQTEADVMNESVGPEFANFTEGKNTLNGATALVYVRIRYGVGDDFGRTQRQRDFMLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEMAGLAGGAISSYMDYPMYQFRLPEDGAFSAVDVDAGNVLAIDDWDAAREHLQRFIYEDTVDPIYGPSTETYGSEM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target QlR103
rcsb
source organism Clostridium leptum
molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein
total genus 76
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3pe5A00
2XXQA 3OWQA 3TFLA 4OBMA 3TELA 2XXPA 4DE9A 3NROA 3NXHA 3TEPA 3QFIA 3MEJA 3OKZA 3PE5A 4DE8A
chains in the Genus database with same CATH superfamily
3A9YA 4X4IA 3UWPA 3G7DA 1VPWA 5DTMA 2PXFA 4NDWA 3VWSA 2LYLA 1ZS4A 3B7HA 3MEJA 2L1PA 4PU3C 4Z58A 3ZHMA 3SX0A 2XI8A 2GZUA 1RZSA 2WUSR 4DE8A 2LNMA 2PUEA 2JCGA 5GAHi 2D5VA 1MFQC 1LMB3 3RZZA 3JXDL 2KEIA 1RIOA 2PXDA 1WETA 2O49A 3GZDA 4PU4C 3F52A 4O8BA 2HCNA 2XJ3A 3OQNA 4X4GA 1U2ZA 1RZRA 1LQCA 1RZRD 3ZHIA 3R1FA 4X4EA 1PRAA 1QQBA 2PXEA 3LQXA 2R1JL 2PXLA 3NZLA 3SCFA 2AWIA 5K98B 2IVBA 2PUBA 5DSXA 3OWQA 4X4BA 1OCTC 3G5GA 3NROA 1PRVA 4ER6A 1R69A 3U3WA 1DW9A 2V3CC 2MXDA 2XCJA 4Z5DA 3ZKCA 1CJGA 4Z5CA 1R63A 4HRAA 3BD1A 4I6UA 1S7EA 2L49A 3FYAA 4Z59A 4I8TA 2GRLA 2KEKA 1E3OC 4JCXA 2LYQA 3QQ6A 3NDBB 2O4AA 4EKIA 3NXHA 3R09A 4IWRA 3OMTA 1UXCA 3GZCA 3IVPA 1HQ1A 3TEPA 2ICTA 5DRTA 3FMYA 2ODRD 4DE9A 2WIUB 4X4DA 2PPXA 1SQ8A 2IUOA 4FN3A 1ZZ6A 4YG1A 1QPZA 2MEZA 1JFSA 3JXCL 1LCCA 3GZDC 1JH9A 2BNMA 2A6CA 2FFHA 3VK0A 2LYJA 2XXAA 2PXUA 1QQAA 4J1XA 3BDNA 4ER0A 1WH8A 3QYXA 3GN5A 1ZPQA 1Y7YA 3QF3A 1Y9QA 1QP7A 2PUGA 2BNOA 2KZ8A 2JVLA 3QWGA 3L1PA 2XXPA 2M4HA 1YSEA 4ER7A 3O9XA 1X2LA 2PXBA 1O4XA 2BNNA 4JQDA 3GN5B 4EZIA 3F51A 1DULA 4JCYA 3LISA 1ZZ8A 2XIUA 2PXVA 1RPEL 3QOXA 1AU7A 3FYMA 2BJCA 2L8NA 5DTRA 3KZ3A 1PNRA 2AW6A 3TFLA 3ZPXA 2O38A 2PUAA 2LYRA 3SR4A 1ZZBA 4Y42A 3SCGA 2JQEA 1NERA 2LLWA 1NW3A 4ER5A 2EBYA 2LCVA 1IC8A 3OQMA 3UFDA 3MLFA 1QP4A 1BDIA 1B0NA 5JUWA 3CECA 2J7UA 4Q2JA 5GAGi 1LCDA 2GRMA 3HZIB 3CLCA 1UXDA 2IVGA 2LYKA 4WVLA 2LYSA 1ADRA 3KJXA 1ZZCA 2J7WA 2AXVA 4YG4A 2HINA 4I6RA 4FBIA 5DT2A 4X4CA 1PRUA 2IV1A 2ICPA 2PXTA 2XSDC 1LLIA 3OQOA 1QZXA 3DM5A 4MCXA 1X57A 1ZAYA 4ER3A 3OKZA 2OR1L 2HFZA 1QB2A 1ZZ7A 2AXZA 1DWKA 1NEQA 2CROA 4PU8A 2HSGA 5DTQA 1BDHA 1CQTA 2CSFA 3BS3A 4F8DA 3QFIA 3A9ZA 4EKGA 5A7LA 3JXBC 2XXQA 5DRYA 1JWLA 3EUSA 2PXKA 3LFPA 3QOWA 1UTXA 3KL4A 3GBFA 2IU7A 3ME5A 4J1WA 3S8QA 1XWRA 3DNVB 1EFAA 4Z5HA 2AXUA 2OFYA 2HCSA 1WIZA 2PXQA 3SCHA 2FJRA 3TRBA 3CROL 2VEOA 1HF0A 2PUDA 4YBAA 4X4HA 4MCTA 1GT0C 4EQZA 1ZUGA 3G0TA 1POUA 1OSLA 2PUFA 4YG7B 3H5TA 2EWTA 2YBDA 1ZVVA 2H8RA 1QP0A 1PERL 3GUUA 4GHJA 2PE5A 3TELA 2AUWA 2KPJA 3A9XA 2MQKA 1ZZ9A 2IVQA 4X4FA 2LLVA 3KXAA 4OBMA 1WH6A 2PIJA 2EF8A 4IVZA 4EK9A 3PE5A 3F6WA 4I6TA 1JFTA 2LYPA 4YARA 3D1NI 1L1MA 3M9LA 4OB4A 2PUCA 4IA8A 4GQMA 4PU7A 2R63A 2B5AA 3PXPA 3OP9A 2KEJA 2PXPA
chains in the Genus database with same CATH topology
2HFZA 4WVLA 3TFLA 4OBMA 3A9YA 2XXPA 2HCSA 2YBDA 3NROA 2M4HA 5DRTA 4ER6A 4EK9A 4ER7A 3ZPXA 3GUUA 2J7WA 3PE5A 3UWPA 4DE8A 2XXQA 2ODRD 3TELA 5DRYA 2LNMA 5DTMA 4DE9A 3SR4A 4ER0A 3NZLA 2MXDA 4EZIA 3A9XA 2VEOA 3VWSA 5DT2A 5JUWA 3QOWA 3M9LA 4EKIA 2J7UA 2LLWA 4Q2JA 5DTQA 3GZDA 1NW3A 3NXHA 3R09A 4HRAA 4EQZA 3MEJA 3QOXA 5DSXA 3G0TA 4ER5A 3ME5A 3OWQA 2L1PA 5DTRA 2HCNA 3GZCA 3TEPA 3GZDC 3QFIA 4ER3A 3A9ZA 3SX0A 3OKZA 4EKGA 1U2ZA 2LLVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XXQ A;  3OWQ A;  3TFL A;  4OBM A;  3TEL A;  2XXP A;  4DE9 A;  3NRO A;  3NXH A;  3TEP A;  3QFI A;  3MEJ A;  3OKZ A;  3PE5 A;  4DE8 A; 
#chains in the Genus database with same CATH topology
 3A9Y A;  4X4I A;  3UWP A;  3G7D A;  1VPW A;  5DTM A;  2PXF A;  4NDW A;  3VWS A;  2LYL A;  1ZS4 A;  3B7H A;  3MEJ A;  2L1P A;  4PU3 C;  4Z58 A;  3ZHM A;  3SX0 A;  2XI8 A;  2GZU A;  1RZS A;  2WUS R;  4DE8 A;  2LNM A;  2PUE A;  2JCG A;  5GAH i;  2D5V A;  1MFQ C;  1LMB 3;  3RZZ A;  3JXD L;  2KEI A;  1RIO A;  2PXD A;  1WET A;  2O49 A;  3GZD A;  4PU4 C;  3F52 A;  4O8B A;  2HCN A;  2XJ3 A;  3OQN A;  4X4G A;  1U2Z A;  1RZR A;  1LQC A;  1RZR D;  3ZHI A;  3R1F A;  4X4E A;  1PRA A;  1QQB A;  2PXE A;  3LQX A;  2R1J L;  2PXL A;  3NZL A;  3SCF A;  2AWI A;  5K98 B;  2IVB A;  2PUB A;  5DSX A;  3OWQ A;  4X4B A;  1OCT C;  3G5G A;  3NRO A;  1PRV A;  4ER6 A;  1R69 A;  3U3W A;  1DW9 A;  2V3C C;  2MXD A;  2XCJ A;  4Z5D A;  3ZKC A;  1CJG A;  4Z5C A;  1R63 A;  4HRA A;  3BD1 A;  4I6U A;  1S7E A;  2L49 A;  3FYA A;  4Z59 A;  4I8T A;  2GRL A;  2KEK A;  1E3O C;  4JCX A;  2LYQ A;  3QQ6 A;  3NDB B;  2O4A A;  4EKI A;  3NXH A;  3R09 A;  4IWR A;  3OMT A;  1UXC A;  3GZC A;  3IVP A;  1HQ1 A;  3TEP A;  2ICT A;  5DRT A;  3FMY A;  2ODR D;  4DE9 A;  2WIU B;  4X4D A;  2PPX A;  1SQ8 A;  2IUO A;  4FN3 A;  1ZZ6 A;  4YG1 A;  1QPZ A;  2MEZ A;  1JFS A;  3JXC L;  1LCC A;  3GZD C;  1JH9 A;  2BNM A;  2A6C A;  2FFH A;  3VK0 A;  2LYJ A;  2XXA A;  2PXU A;  1QQA A;  4J1X A;  3BDN A;  4ER0 A;  1WH8 A;  3QYX A;  3GN5 A;  1ZPQ A;  1Y7Y A;  3QF3 A;  1Y9Q A;  1QP7 A;  2PUG A;  2BNO A;  2KZ8 A;  2JVL A;  3QWG A;  3L1P A;  2XXP A;  2M4H A;  1YSE A;  4ER7 A;  3O9X A;  1X2L A;  2PXB A;  1O4X A;  2BNN A;  4JQD A;  3GN5 B;  4EZI A;  3F51 A;  1DUL A;  4JCY A;  3LIS A;  1ZZ8 A;  2XIU A;  2PXV A;  1RPE L;  3QOX A;  1AU7 A;  3FYM A;  2BJC A;  2L8N A;  5DTR A;  3KZ3 A;  1PNR A;  2AW6 A;  3TFL A;  3ZPX A;  2O38 A;  2PUA A;  2LYR A;  3SR4 A;  1ZZB A;  4Y42 A;  3SCG A;  2JQE A;  1NER A;  2LLW A;  1NW3 A;  4ER5 A;  2EBY A;  2LCV A;  1IC8 A;  3OQM A;  3UFD A;  3MLF A;  1QP4 A;  1BDI A;  1B0N A;  5JUW A;  3CEC A;  2J7U A;  4Q2J A;  5GAG i;  1LCD A;  2GRM A;  3HZI B;  3CLC A;  1UXD A;  2IVG A;  2LYK A;  4WVL A;  2LYS A;  1ADR A;  3KJX A;  1ZZC A;  2J7W A;  2AXV A;  4YG4 A;  2HIN A;  4I6R A;  4FBI A;  5DT2 A;  4X4C A;  1PRU A;  2IV1 A;  2ICP A;  2PXT A;  2XSD C;  1LLI A;  3OQO A;  1QZX A;  3DM5 A;  4MCX A;  1X57 A;  1ZAY A;  4ER3 A;  3OKZ A;  2OR1 L;  2HFZ A;  1QB2 A;  1ZZ7 A;  2AXZ A;  1DWK A;  1NEQ A;  2CRO A;  4PU8 A;  2HSG A;  5DTQ A;  1BDH A;  1CQT A;  2CSF A;  3BS3 A;  4F8D A;  3QFI A;  3A9Z A;  4EKG A;  5A7L A;  3JXB C;  2XXQ A;  5DRY A;  1JWL A;  3EUS A;  2PXK A;  3LFP A;  3QOW A;  1UTX A;  3KL4 A;  3GBF A;  2IU7 A;  3ME5 A;  4J1W A;  3S8Q A;  1XWR A;  3DNV B;  1EFA A;  4Z5H A;  2AXU A;  2OFY A;  2HCS A;  1WIZ A;  2PXQ A;  3SCH A;  2FJR A;  3TRB A;  3CRO L;  2VEO A;  1HF0 A;  2PUD A;  4YBA A;  4X4H A;  4MCT A;  1GT0 C;  4EQZ A;  1ZUG A;  3G0T A;  1POU A;  1OSL A;  2PUF A;  4YG7 B;  3H5T A;  2EWT A;  2YBD A;  1ZVV A;  2H8R A;  1QP0 A;  1PER L;  3GUU A;  4GHJ A;  2PE5 A;  3TEL A;  2AUW A;  2KPJ A;  3A9X A;  2MQK A;  1ZZ9 A;  2IVQ A;  4X4F A;  2LLV A;  3KXA A;  4OBM A;  1WH6 A;  2PIJ A;  2EF8 A;  4IVZ A;  4EK9 A;  3PE5 A;  3F6W A;  4I6T A;  1JFT A;  2LYP A;  4YAR A;  3D1N I;  1L1M A;  3M9L A;  4OB4 A;  2PUC A;  4IA8 A;  4GQM A;  4PU7 A;  2R63 A;  2B5A A;  3PXP A;  3OP9 A;  2KEJ A;  2PXP A; 
#chains in the Genus database with same CATH homology
 2HFZ A;  4WVL A;  3TFL A;  4OBM A;  3A9Y A;  2XXP A;  2HCS A;  2YBD A;  3NRO A;  2M4H A;  5DRT A;  4ER6 A;  4EK9 A;  4ER7 A;  3ZPX A;  3GUU A;  2J7W A;  3PE5 A;  3UWP A;  4DE8 A;  2XXQ A;  2ODR D;  3TEL A;  5DRY A;  2LNM A;  5DTM A;  4DE9 A;  3SR4 A;  4ER0 A;  3NZL A;  2MXD A;  4EZI A;  3A9X A;  2VEO A;  3VWS A;  5DT2 A;  5JUW A;  3QOW A;  3M9L A;  4EKI A;  2J7U A;  2LLW A;  4Q2J A;  5DTQ A;  3GZD A;  1NW3 A;  3NXH A;  3R09 A;  4HRA A;  4EQZ A;  3MEJ A;  3QOX A;  5DSX A;  3G0T A;  4ER5 A;  3ME5 A;  3OWQ A;  2L1P A;  5DTR A;  2HCN A;  3GZC A;  3TEP A;  3GZD C;  3QFI A;  4ER3 A;  3A9Z A;  3SX0 A;  3OKZ A;  4EKG A;  1U2Z A;  2LLV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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