2LNMA

Solution structure of the c-terminal np-repeat domain of tic40, a co-chaperone during protein import into chloroplasts
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
62
structure length
62
Chain Sequence
PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the C-terminal NP-repeat domain of Tic40, a co-chaperone during protein import into chloroplasts.
pubmed doi rcsb
molecule tags Protein transport
source organism Arabidopsis thaliana
molecule keywords Protein TIC 40, chloroplastic
total genus 17
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 2012-01-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17830 STI1 STI1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.100 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 2lnmA00
2LNMA 2LLWA 2LLVA
chains in the Genus database with same CATH superfamily
2PXPA 4EK9A 3D1NI 3QYXA 3KJXA 4J1XA 3NXHA 1GT0C 1NW3A 2PIJA 1HF0A 3NROA 4Q2JA 2VEOA 4OBMA 2PXKA 1QP7A 2KEJA 2LYKA 3QOXA 1HQ1A 2PXQA 1IC8A 1ZVVA 4I6RA 2A6CA 2PXLA 2O4AA 3OQNA 1U2ZA 1CJGA 1ZZ8A 5GAHi 2R63A 2PXUA 2O38A 1PNRA 3GUUA 1JH9A 3L1PA 2L8NA 2BNMA 3GN5A 4GHJA 2R1JL 1R69A 4MCTA 2PXDA 1QP4A 3CROL 3QOWA 3SX0A 2IVGA 3KL4A 2LNMA 1PRVA 3FYMA 4Z58A 3JXCL 2IUOA 4ER3A 2PXEA 4Z5DA 2CROA 1NERA 2IV1A 2JQEA 4Z5CA 2PUDA 2MXDA 4Y42A 1DULA 2WIUB 4F8DA 4WVLA 1PERL 1B0NA 2PUEA 3M9LA 4PU7A 4OB4A 2CSFA 2LYRA 3JXBC 3LQXA 1RZRA 4EZIA 1ZS4A 3ZHIA 2PXTA 3O9XA 2JCGA 5DTMA 3S8QA 1MFQC 3VWSA 3SR4A 3KZ3A 4PU8A 2XIUA 1RZRD 3NZLA 5DRYA 5JUWA 2XJ3A 1ZZ7A 3BS3A 4GQMA 2V3CC 4X4IA 1LQCA 1UXCA 1LMB3 1JWLA 4PU4C 2HFZA 2XI8A 2XXQA 2PUGA 3ZKCA 3B7HA 2LYJA 3G7DA 1VPWA 3ME5A 1OCTC 3MEJA 2PE5A 2XXPA 2YBDA 3A9ZA 4HRAA 4EQZA 4FN3A 2HCNA 1QB2A 3GN5B 2B5AA 2BNOA 4MCXA 2OR1L 4JCXA 2BNNA 1UTXA 2ODRD 1OSLA 3OQMA 4X4HA 3OMTA 3R09A 4YG7B 2IU7A 2PPXA 1EFAA 3G0TA 3OWQA 3GZDA 2XXAA 3SCFA 1POUA 2MEZA 5K98B 2KZ8A 2M4HA 2GRMA 1SQ8A 2AWIA 3FYAA 1R63A 2LYQA 4IVZA 1L1MA 2HINA 2LYPA 1X2LA 2ICPA 1E3OC 3LISA 4IWRA 1X57A 4EKGA 3UWPA 4X4CA 4JQDA 2EF8A 1DWKA 1S7EA 3EUSA 3IVPA 4EKIA 1ADRA 2L49A 1PRAA 3OP9A 1UXDA 2AXZA 3CLCA 2LYLA 3DM5A 2GRLA 1NEQA 2D5VA 1ZZCA 3H5TA 3PE5A 3GZDC 3A9YA 1CQTA 4ER5A 3F6WA 5GAGi 2PUFA 3TFLA 3QF3A 3BDNA 1JFSA 4X4FA 3SCHA 4PU3C 4DE9A 4ER7A 3DNVB 1ZZ6A 3G5GA 2J7UA 4X4EA 4ER0A 2O49A 1QP0A 2KEIA 3U3WA 4X4BA 4J1WA 1DW9A 1Y7YA 2PXBA 2GZUA 3KXAA 2AW6A 5DT2A 1RPEL 2PUAA 4JCYA 1PRUA 5DTRA 1RIOA 3OQOA 2IVQA 3R1FA 2PXVA 3QFIA 1WETA 4ER6A 1BDHA 1LCCA 1QPZA 4I6UA 1WH8A 1O4XA 2IVBA 4DE8A 3BD1A 2KPJA 3GZCA 3TRBA 2WUSR 4X4DA 3MLFA 5A7LA 3TELA 3PXPA 3LFPA 1QZXA 1LLIA 2XCJA 3GBFA 1RZSA 1JFTA 2PXFA 2BJCA 2EBYA 2LCVA 4I8TA 3RZZA 4YARA 4Z5HA 4X4GA 1QQBA 4YBAA 1ZZ9A 4YG1A 3JXDL 3ZPXA 2AXUA 3A9XA 2FFHA 3CECA 1ZZBA 2PUCA 2OFYA 5DTQA 1ZPQA 2J7WA 3NDBB 4Z59A 4I6TA 3HZIB 1WIZA 4YG4A 1QQAA 1WH6A 3TEPA 2PUBA 2AUWA 2JVLA 3SCGA 2AXVA 3FMYA 3OKZA 3VK0A 2LYSA 1Y9QA 5DRTA 4NDWA 1YSEA 2LLWA 4O8BA 1AU7A 2MQKA 2KEKA 2FJRA 3F52A 2EWTA 2H8RA 3ZHMA 4IA8A 3F51A 1LCDA 3QWGA 3UFDA 2LLVA 5DSXA 4FBIA 2ICTA 2HCSA 1BDIA 1XWRA 1ZUGA 2XSDC 3QQ6A 2HSGA 2L1PA 1ZAYA
chains in the Genus database with same CATH topology
4ER7A 3OWQA 3GZDA 3ZPXA 5JUWA 3TEPA 2YBDA 3QFIA 3A9ZA 4EK9A 2J7UA 4HRAA 4ER6A 3A9XA 4ER0A 4EQZA 2HCNA 3TELA 3OKZA 4EZIA 4DE9A 3NXHA 1U2ZA 3QOWA 3PE5A 2M4HA 3SX0A 3GZDC 3A9YA 4EKGA 3UWPA 5DTQA 1NW3A 4DE8A 2LNMA 5DTMA 4ER5A 2LLVA 3NROA 5DSXA 2MXDA 5DRTA 3TFLA 3VWSA 4Q2JA 2HFZA 2XXQA 3GUUA 2HCSA 2ODRD 3G0TA 3SR4A 2J7WA 2LLWA 3GZCA 2VEOA 4WVLA 4OBMA 3R09A 5DT2A 3M9LA 2L1PA 3NZLA 4EKIA 5DRYA 3ME5A 5DTRA 4ER3A 3MEJA 3QOXA 2XXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LNM A;  2LLW A;  2LLV A; 
#chains in the Genus database with same CATH topology
 2PXP A;  4EK9 A;  3D1N I;  3QYX A;  3KJX A;  4J1X A;  3NXH A;  1GT0 C;  1NW3 A;  2PIJ A;  1HF0 A;  3NRO A;  4Q2J A;  2VEO A;  4OBM A;  2PXK A;  1QP7 A;  2KEJ A;  2LYK A;  3QOX A;  1HQ1 A;  2PXQ A;  1IC8 A;  1ZVV A;  4I6R A;  2A6C A;  2PXL A;  2O4A A;  3OQN A;  1U2Z A;  1CJG A;  1ZZ8 A;  5GAH i;  2R63 A;  2PXU A;  2O38 A;  1PNR A;  3GUU A;  1JH9 A;  3L1P A;  2L8N A;  2BNM A;  3GN5 A;  4GHJ A;  2R1J L;  1R69 A;  4MCT A;  2PXD A;  1QP4 A;  3CRO L;  3QOW A;  3SX0 A;  2IVG A;  3KL4 A;  2LNM A;  1PRV A;  3FYM A;  4Z58 A;  3JXC L;  2IUO A;  4ER3 A;  2PXE A;  4Z5D A;  2CRO A;  1NER A;  2IV1 A;  2JQE A;  4Z5C A;  2PUD A;  2MXD A;  4Y42 A;  1DUL A;  2WIU B;  4F8D A;  4WVL A;  1PER L;  1B0N A;  2PUE A;  3M9L A;  4PU7 A;  4OB4 A;  2CSF A;  2LYR A;  3JXB C;  3LQX A;  1RZR A;  4EZI A;  1ZS4 A;  3ZHI A;  2PXT A;  3O9X A;  2JCG A;  5DTM A;  3S8Q A;  1MFQ C;  3VWS A;  3SR4 A;  3KZ3 A;  4PU8 A;  2XIU A;  1RZR D;  3NZL A;  5DRY A;  5JUW A;  2XJ3 A;  1ZZ7 A;  3BS3 A;  4GQM A;  2V3C C;  4X4I A;  1LQC A;  1UXC A;  1LMB 3;  1JWL A;  4PU4 C;  2HFZ A;  2XI8 A;  2XXQ A;  2PUG A;  3ZKC A;  3B7H A;  2LYJ A;  3G7D A;  1VPW A;  3ME5 A;  1OCT C;  3MEJ A;  2PE5 A;  2XXP A;  2YBD A;  3A9Z A;  4HRA A;  4EQZ A;  4FN3 A;  2HCN A;  1QB2 A;  3GN5 B;  2B5A A;  2BNO A;  4MCX A;  2OR1 L;  4JCX A;  2BNN A;  1UTX A;  2ODR D;  1OSL A;  3OQM A;  4X4H A;  3OMT A;  3R09 A;  4YG7 B;  2IU7 A;  2PPX A;  1EFA A;  3G0T A;  3OWQ A;  3GZD A;  2XXA A;  3SCF A;  1POU A;  2MEZ A;  5K98 B;  2KZ8 A;  2M4H A;  2GRM A;  1SQ8 A;  2AWI A;  3FYA A;  1R63 A;  2LYQ A;  4IVZ A;  1L1M A;  2HIN A;  2LYP A;  1X2L A;  2ICP A;  1E3O C;  3LIS A;  4IWR A;  1X57 A;  4EKG A;  3UWP A;  4X4C A;  4JQD A;  2EF8 A;  1DWK A;  1S7E A;  3EUS A;  3IVP A;  4EKI A;  1ADR A;  2L49 A;  1PRA A;  3OP9 A;  1UXD A;  2AXZ A;  3CLC A;  2LYL A;  3DM5 A;  2GRL A;  1NEQ A;  2D5V A;  1ZZC A;  3H5T A;  3PE5 A;  3GZD C;  3A9Y A;  1CQT A;  4ER5 A;  3F6W A;  5GAG i;  2PUF A;  3TFL A;  3QF3 A;  3BDN A;  1JFS A;  4X4F A;  3SCH A;  4PU3 C;  4DE9 A;  4ER7 A;  3DNV B;  1ZZ6 A;  3G5G A;  2J7U A;  4X4E A;  4ER0 A;  2O49 A;  1QP0 A;  2KEI A;  3U3W A;  4X4B A;  4J1W A;  1DW9 A;  1Y7Y A;  2PXB A;  2GZU A;  3KXA A;  2AW6 A;  5DT2 A;  1RPE L;  2PUA A;  4JCY A;  1PRU A;  5DTR A;  1RIO A;  3OQO A;  2IVQ A;  3R1F A;  2PXV A;  3QFI A;  1WET A;  4ER6 A;  1BDH A;  1LCC A;  1QPZ A;  4I6U A;  1WH8 A;  1O4X A;  2IVB A;  4DE8 A;  3BD1 A;  2KPJ A;  3GZC A;  3TRB A;  2WUS R;  4X4D A;  3MLF A;  5A7L A;  3TEL A;  3PXP A;  3LFP A;  1QZX A;  1LLI A;  2XCJ A;  3GBF A;  1RZS A;  1JFT A;  2PXF A;  2BJC A;  2EBY A;  2LCV A;  4I8T A;  3RZZ A;  4YAR A;  4Z5H A;  4X4G A;  1QQB A;  4YBA A;  1ZZ9 A;  4YG1 A;  3JXD L;  3ZPX A;  2AXU A;  3A9X A;  2FFH A;  3CEC A;  1ZZB A;  2PUC A;  2OFY A;  5DTQ A;  1ZPQ A;  2J7W A;  3NDB B;  4Z59 A;  4I6T A;  3HZI B;  1WIZ A;  4YG4 A;  1QQA A;  1WH6 A;  3TEP A;  2PUB A;  2AUW A;  2JVL A;  3SCG A;  2AXV A;  3FMY A;  3OKZ A;  3VK0 A;  2LYS A;  1Y9Q A;  5DRT A;  4NDW A;  1YSE A;  2LLW A;  4O8B A;  1AU7 A;  2MQK A;  2KEK A;  2FJR A;  3F52 A;  2EWT A;  2H8R A;  3ZHM A;  4IA8 A;  3F51 A;  1LCD A;  3QWG A;  3UFD A;  2LLV A;  5DSX A;  4FBI A;  2ICT A;  2HCS A;  1BDI A;  1XWR A;  1ZUG A;  2XSD C;  3QQ6 A;  2HSG A;  2L1P A;  1ZAY A; 
#chains in the Genus database with same CATH homology
 4ER7 A;  3OWQ A;  3GZD A;  3ZPX A;  5JUW A;  3TEP A;  2YBD A;  3QFI A;  3A9Z A;  4EK9 A;  2J7U A;  4HRA A;  4ER6 A;  3A9X A;  4ER0 A;  4EQZ A;  2HCN A;  3TEL A;  3OKZ A;  4EZI A;  4DE9 A;  3NXH A;  1U2Z A;  3QOW A;  3PE5 A;  2M4H A;  3SX0 A;  3GZD C;  3A9Y A;  4EKG A;  3UWP A;  5DTQ A;  1NW3 A;  4DE8 A;  2LNM A;  5DTM A;  4ER5 A;  2LLV A;  3NRO A;  5DSX A;  2MXD A;  5DRT A;  3TFL A;  3VWS A;  4Q2J A;  2HFZ A;  2XXQ A;  3GUU A;  2HCS A;  2ODR D;  3G0T A;  3SR4 A;  2J7W A;  2LLW A;  3GZC A;  2VEO A;  4WVL A;  4OBM A;  3R09 A;  5DT2 A;  3M9L A;  2L1P A;  3NZL A;  4EKI A;  5DRY A;  3ME5 A;  5DTR A;  4ER3 A;  3MEJ A;  3QOX A;  2XXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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