The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
18
|
sequence length |
62
|
structure length |
62
|
Chain Sequence |
GAMAIALRDDEYDEWQDIIRDWRKEMTVQQFLDLKERALSGASDPDSQRYNAWLELRAKRLS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution structure of the porcine sapovirus VPg core reveals a stable three-helical bundle with a conserved surface patch.
pubmed doi rcsb |
| molecule keywords |
Viral protein genome-linked
|
| molecule tags |
Viral protein
|
| source organism |
Porcine enteric sapovirus
|
| total genus |
18
|
| structure length |
62
|
| sequence length |
62
|
| ec nomenclature |
ec
2.7.7.48: RNA-directed RNA polymerase. |
| pdb deposition date | 2014-12-24 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | 434 Repressor (Amino-terminal Domain) |
#chains in the Genus database with same CATH superfamily 2M4H A; 2MXD A; #chains in the Genus database with same CATH topology 3BD1 A; 1LCC A; 3A9X A; 3JXC L; 1NW3 A; 3UFD A; 1O4X A; 4EKI A; 2PE5 A; 4X4F A; 3FMY A; 3VWS A; 1Y7Y A; 4JCX A; 2LYL A; 3RZZ A; 4ER0 A; 2PXQ A; 2PUG A; 3FYA A; 1PER L; 2FFH A; 3OKZ A; 2IVG A; 1U2Z A; 2PXD A; 1PRV A; 1WH6 A; 3NRO A; 3GZC A; 3OP9 A; 4I6T A; 2B5A A; 2GRL A; 2LYP A; 2L49 A; 2PUA A; 4EQZ A; 3VK0 A; 4JCY A; 1UXC A; 1QB2 A; 2GRM A; 2O4A A; 4GHJ A; 3M9L A; 2LCV A; 1RZR A; 2BJC A; 1PNR A; 2PXU A; 1PRA A; 1ZUG A; 3SCG A; 2LYR A; 1LQC A; 1R63 A; 5DTQ A; 2XXA A; 2JCG A; 3LFP A; 2JQE A; 2AWI A; 1UXD A; 5A7L A; 3OQM A; 5JUW A; 1RZS A; 2KEI A; 2HSG A; 2AUW A; 1HF0 A; 1QQA A; 2MEZ A; 3LIS A; 1HQ1 A; 3U3W A; 3TEP A; 3QWG A; 2CSF A; 3QQ6 A; 2WIU B; 1QPZ A; 4PU3 C; 1YSE A; 2LYJ A; 2AXZ A; 1OCT C; 2KPJ A; 1SQ8 A; 2OR1 L; 4X4B A; 3MLF A; 1ZZB A; 1X2L A; 3GN5 A; 3MEJ A; 4Z5H A; 1IC8 A; 2PPX A; 3PXP A; 2XCJ A; 3ZPX A; 2PXE A; 4Z5D A; 4YAR A; 2O38 A; 2PXK A; 2AXU A; 1DW9 A; 3GUU A; 1RZR D; 1MFQ C; 3CRO L; 1ZZ7 A; 1S7E A; 1ZZ8 A; 2LLV A; 3OMT A; 4YG4 A; 4IVZ A; 2KEJ A; 4Z59 A; 2OFY A; 2KEK A; 1WH8 A; 1PRU A; 2VEO A; 4J1W A; 1OSL A; 1NER A; 4X4E A; 2V3C C; 3OQO A; 2A6C A; 4X4G A; 2KZ8 A; 2LYK A; 3B7H A; 2HCN A; 2HIN A; 1ZZC A; 4NDW A; 3ZHI A; 2EWT A; 3R09 A; 2O49 A; 2IUO A; 3QYX A; 3O9X A; 1ZZ9 A; 3BDN A; 1BDH A; 4EKG A; 1Y9Q A; 4DE8 A; 3R1F A; 2MQK A; 2AW6 A; 3G7D A; 2LNM A; 1QZX A; 3OWQ A; 4DE9 A; 2PXV A; 2M4H A; 3SR4 A; 1CQT A; 5GAH i; 2YBD A; 3CLC A; 1NEQ A; 4EZI A; 4EK9 A; 1JFT A; 3BS3 A; 4OBM A; 3A9Y A; 4J1X A; 2J7W A; 5DRY A; 2PUD A; 2ICT A; 2CRO A; 3QOW A; 1DUL A; 4HRA A; 4MCX A; 1QP4 A; 2FJR A; 3KXA A; 1RIO A; 2XJ3 A; 3TRB A; 3F6W A; 5GAG i; 2XXQ A; 1E3O C; 1L1M A; 1WET A; 4JQD A; 3HZI B; 3GBF A; 4MCT A; 2XIU A; 2XI8 A; 4ER5 A; 4Z5C A; 3NXH A; 2HFZ A; 2MXD A; 4Y42 A; 4ER3 A; 3UWP A; 3ZHM A; 3QOX A; 2IV1 A; 4ER6 A; 4IWR A; 1JFS A; 2PUC A; 2J7U A; 3CEC A; 2PXF A; 2EBY A; 3A9Z A; 3D1N I; 3GZD A; 1R69 A; 3DM5 A; 1ZS4 A; 2D5V A; 5DTR A; 3KZ3 A; 2PXL A; 5DRT A; 4X4C A; 4O8B A; 1ZVV A; 3KJX A; 1JH9 A; 1QQB A; 3NDB B; 4YG7 B; 3QF3 A; 1DWK A; 2EF8 A; 3SCH A; 1JWL A; 3GN5 B; 5K98 B; 2LYQ A; 4I6U A; 3G0T A; 2R63 A; 2IVB A; 3F51 A; 4I8T A; 1ZPQ A; 2BNN A; 4YG1 A; 3FYM A; 2LLW A; 2IVQ A; 1BDI A; 3ZKC A; 2BNO A; 2WUS R; 3EUS A; 2JVL A; 2PUE A; 1VPW A; 1LCD A; 4PU4 C; 4Q2J A; 3OQN A; 3F52 A; 1B0N A; 1RPE L; 2XXP A; 3TEL A; 2HCS A; 4X4H A; 3ME5 A; 4X4D A; 3IVP A; 1ZAY A; 1QP0 A; 2LYS A; 2PUB A; 2PUF A; 3KL4 A; 4X4I A; 4OB4 A; 3TFL A; 2ICP A; 3H5T A; 5DTM A; 4Z58 A; 1LMB 3; 3LQX A; 4FBI A; 2IU7 A; 2AXV A; 3SX0 A; 2XSD C; 1UTX A; 1GT0 C; 1X57 A; 3G5G A; 4WVL A; 2R1J L; 2GZU A; 1QP7 A; 3L1P A; 2BNM A; 4IA8 A; 3S8Q A; 3JXB C; 5DSX A; 4FN3 A; 1CJG A; 4YBA A; 5DT2 A; 3JXD L; 3GZD C; 4F8D A; 3DNV B; 4PU8 A; 1ADR A; 1XWR A; 2L8N A; 1WIZ A; 1POU A; 3PE5 A; 2ODR D; 1AU7 A; 1ZZ6 A; 1LLI A; 2H8R A; 2PXT A; 2L1P A; 2PXB A; 2PXP A; 3QFI A; 2PIJ A; 4PU7 A; 3NZL A; 4ER7 A; 4I6R A; 1EFA A; 4GQM A; 3SCF A; #chains in the Genus database with same CATH homology 3TFL A; 3OKZ A; 5JUW A; 3QOW A; 4ER5 A; 3NXH A; 5DTM A; 2HFZ A; 3M9L A; 3A9X A; 2MXD A; 3G0T A; 4HRA A; 3MEJ A; 5DTR A; 5DSX A; 1NW3 A; 4ER3 A; 2L1P A; 2LNM A; 4Q2J A; 3UWP A; 2LLV A; 5DRT A; 1U2Z A; 3TEP A; 4EKI A; 3QOX A; 3OWQ A; 5DT2 A; 2XXP A; 3ZPX A; 2M4H A; 2HCN A; 3TEL A; 2HCS A; 4DE9 A; 3QFI A; 3ME5 A; 4ER6 A; 4EQZ A; 3NRO A; 3VWS A; 3SR4 A; 3GZD C; 5DRY A; 4DE8 A; 2XXQ A; 2YBD A; 3GZC A; 4EZI A; 2LLW A; 3R09 A; 4ER0 A; 3SX0 A; 3NZL A; 4ER7 A; 2VEO A; 5DTQ A; 2J7U A; 3GUU A; 4EK9 A; 3A9Z A; 4OBM A; 3A9Y A; 2J7W A; 4EKG A; 3PE5 A; 4WVL A; 3GZD A; 2ODR D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
