2PXUA

Variant 16 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
molecule tags Signaling protein/rna
source organism Escherichia coli
molecule keywords 4.5 S RNA
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxuA00
2PXVA 3DM5A 2PXKA 2V3CC 2PXBA 2JQEA 1MFQC 2PXDA 1DULA 1QZXA 5GAHi 2PXPA 2XXAA 1HQ1A 2PXEA 2PXLA 2PXFA 5GAGi 2FFHA 2PXUA 3KL4A 3LQXA 3NDBB 2PXTA 1QB2A 2PXQA
chains in the Genus database with same CATH superfamily
1ZZCA 2J7UA 2LYPA 3OQMA 2PUBA 1POUA 2BNMA 5JUWA 2JCGA 2OR1L 3JXDL 2XIUA 5A7LA 3G5GA 4O8BA 3ZKCA 4X4FA 3NDBB 2VEOA 2PUCA 2PUEA 4FN3A 4YBAA 3TFLA 1WIZA 2KEIA 3BS3A 2MXDA 3QF3A 2XI8A 3CROL 2L8NA 2KEJA 1JWLA 2FJRA 3A9ZA 2LYSA 4YARA 2YBDA 1UXCA 3TELA 2LNMA 4PU4C 3HZIB 4EK9A 4X4BA 1B0NA 1ZZ8A 3FYMA 4X4DA 1ZVVA 2OFYA 3KZ3A 4PU3C 2XXQA 3QOWA 1ZZ7A 4I6UA 4Z59A 2WIUB 2CROA 2MEZA 1X57A 4GHJA 1BDHA 3O9XA 2XSDC 2IVBA 3SCHA 2KEKA 1CQTA 1WH6A 3RZZA 4PU7A 4Y42A 3JXBC 1NERA 5DRTA 3H5TA 2GRMA 1ZZ9A 2LYRA 2V3CC 4OB4A 1X2LA 2EWTA 2O38A 2BJCA 1PRUA 3ZHIA 3CECA 3LFPA 3LQXA 4X4EA 1ADRA 1NEQA 3QOXA 1ZZBA 3OQOA 4X4IA 1YSEA 2B5AA 1CJGA 1Y9QA 1PERL 3NZLA 1LCDA 1AU7A 4YG4A 4Q2JA 3GBFA 2XXAA 4MCXA 4YG7B 3G0TA 4ER6A 3ME5A 4JQDA 3KL4A 2XCJA 3CLCA 1EFAA 4GQMA 4IA8A 3JXCL 4I8TA 2EF8A 3DNVB 2PXDA 3KJXA 2D5VA 1DWKA 3IVPA 2AUWA 5K98B 1GT0C 4EQZA 1ZUGA 3B7HA 3GN5B 4IWRA 3UWPA 3DM5A 1XWRA 4ER5A 4DE8A 3QWGA 3BD1A 3GZDA 1OCTC 2LLVA 3TRBA 2ICTA 3BDNA 4J1WA 2LYLA 2AXUA 3NXHA 3EUSA 4JCXA 1VPWA 2MQKA 1RIOA 2O49A 3GZDC 4Z5HA 2JQEA 1RPEL 2R1JL 3A9XA 3SCFA 2IVGA 1LLIA 4ER7A 2PIJA 1R69A 1LCCA 2EBYA 1JH9A 1LQCA 2AXZA 3F6WA 3ZHMA 1L1MA 2L1PA 4X4GA 2BNNA 4EKIA 3VWSA 2GZUA 5DTRA 1QP0A 3PXPA 2PXEA 1O4XA 2IUOA 2PXUA 2GRLA 1ZS4A 3A9YA 2PXTA 3SX0A 2PUAA 5DTQA 4MCTA 4OBMA 2PUGA 4I6TA 2H8RA 5DSXA 2PUFA 3R09A 1IC8A 2HSGA 2A6CA 2ODRD 1RZSA 3R1FA 4DE9A 3UFDA 2FFHA 1PRAA 1NW3A 4X4HA 2PXQA 2XXPA 3LISA 1DW9A 1HF0A 3OWQA 2PXBA 4EZIA 4I6RA 1ZPQA 1RZRD 2ICPA 1RZRA 2IV1A 3PE5A 5GAHi 4ER3A 2PXLA 1JFSA 3M9LA 2AW6A 3NROA 3TEPA 2L49A 2LLWA 2HINA 1MFQC 3OQNA 5DTMA 3QFIA 4NDWA 1PNRA 2WUSR 4Z5DA 3GN5A 5GAGi 2HCNA 2LCVA 1PRVA 1Y7YA 1QP4A 2PXVA 1UTXA 4F8DA 2HCSA 4FBIA 2PXKA 4IVZA 5DT2A 2JVLA 2BNOA 3F52A 1QQAA 1ZZ6A 1ZAYA 4JCYA 2HFZA 2J7WA 4X4CA 1HQ1A 1S7EA 1WH8A 2PXFA 2AWIA 3QQ6A 1QQBA 2KPJA 3U3WA 3GZCA 2LYKA 3SR4A 1OSLA 1WETA 4J1XA 3L1PA 2PUDA 3FMYA 2CSFA 5DRYA 3QYXA 1U2ZA 3F51A 1QB2A 1JFTA 2IU7A 2KZ8A 1QPZA 3MLFA 2R63A 2O4AA 4HRAA 3ZPXA 2XJ3A 3OMTA 1DULA 2IVQA 1QZXA 3OP9A 1E3OC 2PXPA 1BDIA 4YG1A 3MEJA 4Z58A 1R63A 1QP7A 3G7DA 4WVLA 1SQ8A 3KXAA 3S8QA 4ER0A 3SCGA 3D1NI 4EKGA 2PE5A 2AXVA 2LYJA 4PU8A 2M4HA 1UXDA 3GUUA 3VK0A 2PPXA 1LMB3 3FYAA 3OKZA 2LYQA 4Z5CA
chains in the Genus database with same CATH topology
2PXVA 3DM5A 2PXKA 2V3CC 2PXBA 2JQEA 1MFQC 2PXDA 1DULA 1QZXA 5GAHi 2PXPA 2XXAA 1HQ1A 2PXEA 2PXLA 2PXFA 5GAGi 2FFHA 2PXUA 3KL4A 3LQXA 3NDBB 2PXTA 1QB2A 2PXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXV A;  3DM5 A;  2PXK A;  2V3C C;  2PXB A;  2JQE A;  1MFQ C;  2PXD A;  1DUL A;  1QZX A;  5GAH i;  2PXP A;  2XXA A;  1HQ1 A;  2PXE A;  2PXL A;  2PXF A;  5GAG i;  2FFH A;  2PXU A;  3KL4 A;  3LQX A;  3NDB B;  2PXT A;  1QB2 A;  2PXQ A; 
#chains in the Genus database with same CATH topology
 1ZZC A;  2J7U A;  2LYP A;  3OQM A;  2PUB A;  1POU A;  2BNM A;  5JUW A;  2JCG A;  2OR1 L;  3JXD L;  2XIU A;  5A7L A;  3G5G A;  4O8B A;  3ZKC A;  4X4F A;  3NDB B;  2VEO A;  2PUC A;  2PUE A;  4FN3 A;  4YBA A;  3TFL A;  1WIZ A;  2KEI A;  3BS3 A;  2MXD A;  3QF3 A;  2XI8 A;  3CRO L;  2L8N A;  2KEJ A;  1JWL A;  2FJR A;  3A9Z A;  2LYS A;  4YAR A;  2YBD A;  1UXC A;  3TEL A;  2LNM A;  4PU4 C;  3HZI B;  4EK9 A;  4X4B A;  1B0N A;  1ZZ8 A;  3FYM A;  4X4D A;  1ZVV A;  2OFY A;  3KZ3 A;  4PU3 C;  2XXQ A;  3QOW A;  1ZZ7 A;  4I6U A;  4Z59 A;  2WIU B;  2CRO A;  2MEZ A;  1X57 A;  4GHJ A;  1BDH A;  3O9X A;  2XSD C;  2IVB A;  3SCH A;  2KEK A;  1CQT A;  1WH6 A;  3RZZ A;  4PU7 A;  4Y42 A;  3JXB C;  1NER A;  5DRT A;  3H5T A;  2GRM A;  1ZZ9 A;  2LYR A;  2V3C C;  4OB4 A;  1X2L A;  2EWT A;  2O38 A;  2BJC A;  1PRU A;  3ZHI A;  3CEC A;  3LFP A;  3LQX A;  4X4E A;  1ADR A;  1NEQ A;  3QOX A;  1ZZB A;  3OQO A;  4X4I A;  1YSE A;  2B5A A;  1CJG A;  1Y9Q A;  1PER L;  3NZL A;  1LCD A;  1AU7 A;  4YG4 A;  4Q2J A;  3GBF A;  2XXA A;  4MCX A;  4YG7 B;  3G0T A;  4ER6 A;  3ME5 A;  4JQD A;  3KL4 A;  2XCJ A;  3CLC A;  1EFA A;  4GQM A;  4IA8 A;  3JXC L;  4I8T A;  2EF8 A;  3DNV B;  2PXD A;  3KJX A;  2D5V A;  1DWK A;  3IVP A;  2AUW A;  5K98 B;  1GT0 C;  4EQZ A;  1ZUG A;  3B7H A;  3GN5 B;  4IWR A;  3UWP A;  3DM5 A;  1XWR A;  4ER5 A;  4DE8 A;  3QWG A;  3BD1 A;  3GZD A;  1OCT C;  2LLV A;  3TRB A;  2ICT A;  3BDN A;  4J1W A;  2LYL A;  2AXU A;  3NXH A;  3EUS A;  4JCX A;  1VPW A;  2MQK A;  1RIO A;  2O49 A;  3GZD C;  4Z5H A;  2JQE A;  1RPE L;  2R1J L;  3A9X A;  3SCF A;  2IVG A;  1LLI A;  4ER7 A;  2PIJ A;  1R69 A;  1LCC A;  2EBY A;  1JH9 A;  1LQC A;  2AXZ A;  3F6W A;  3ZHM A;  1L1M A;  2L1P A;  4X4G A;  2BNN A;  4EKI A;  3VWS A;  2GZU A;  5DTR A;  1QP0 A;  3PXP A;  2PXE A;  1O4X A;  2IUO A;  2PXU A;  2GRL A;  1ZS4 A;  3A9Y A;  2PXT A;  3SX0 A;  2PUA A;  5DTQ A;  4MCT A;  4OBM A;  2PUG A;  4I6T A;  2H8R A;  5DSX A;  2PUF A;  3R09 A;  1IC8 A;  2HSG A;  2A6C A;  2ODR D;  1RZS A;  3R1F A;  4DE9 A;  3UFD A;  2FFH A;  1PRA A;  1NW3 A;  4X4H A;  2PXQ A;  2XXP A;  3LIS A;  1DW9 A;  1HF0 A;  3OWQ A;  2PXB A;  4EZI A;  4I6R A;  1ZPQ A;  1RZR D;  2ICP A;  1RZR A;  2IV1 A;  3PE5 A;  5GAH i;  4ER3 A;  2PXL A;  1JFS A;  3M9L A;  2AW6 A;  3NRO A;  3TEP A;  2L49 A;  2LLW A;  2HIN A;  1MFQ C;  3OQN A;  5DTM A;  3QFI A;  4NDW A;  1PNR A;  2WUS R;  4Z5D A;  3GN5 A;  5GAG i;  2HCN A;  2LCV A;  1PRV A;  1Y7Y A;  1QP4 A;  2PXV A;  1UTX A;  4F8D A;  2HCS A;  4FBI A;  2PXK A;  4IVZ A;  5DT2 A;  2JVL A;  2BNO A;  3F52 A;  1QQA A;  1ZZ6 A;  1ZAY A;  4JCY A;  2HFZ A;  2J7W A;  4X4C A;  1HQ1 A;  1S7E A;  1WH8 A;  2PXF A;  2AWI A;  3QQ6 A;  1QQB A;  2KPJ A;  3U3W A;  3GZC A;  2LYK A;  3SR4 A;  1OSL A;  1WET A;  4J1X A;  3L1P A;  2PUD A;  3FMY A;  2CSF A;  5DRY A;  3QYX A;  1U2Z A;  3F51 A;  1QB2 A;  1JFT A;  2IU7 A;  2KZ8 A;  1QPZ A;  3MLF A;  2R63 A;  2O4A A;  4HRA A;  3ZPX A;  2XJ3 A;  3OMT A;  1DUL A;  2IVQ A;  1QZX A;  3OP9 A;  1E3O C;  2PXP A;  1BDI A;  4YG1 A;  3MEJ A;  4Z58 A;  1R63 A;  1QP7 A;  3G7D A;  4WVL A;  1SQ8 A;  3KXA A;  3S8Q A;  4ER0 A;  3SCG A;  3D1N I;  4EKG A;  2PE5 A;  2AXV A;  2LYJ A;  4PU8 A;  2M4H A;  1UXD A;  3GUU A;  3VK0 A;  2PPX A;  1LMB 3;  3FYA A;  3OKZ A;  2LYQ A;  4Z5C A; 
#chains in the Genus database with same CATH homology
 2PXV A;  3DM5 A;  2PXK A;  2V3C C;  2PXB A;  2JQE A;  1MFQ C;  2PXD A;  1DUL A;  1QZX A;  5GAH i;  2PXP A;  2XXA A;  1HQ1 A;  2PXE A;  2PXL A;  2PXF A;  5GAG i;  2FFH A;  2PXU A;  3KL4 A;  3LQX A;  3NDB B;  2PXT A;  1QB2 A;  2PXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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