2PXPA

Variant 13 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-9)TI1 (23-26)TI3 (31-34)TIV1 (36-40)3H1 (27-31)EMPTYTIV2 (38-41)3H2 (43-45)AH2 (48-58)TIV3 (39-42)Updating...
connected with : NaN
molecule tags Signaling protein/rna
source organism Escherichia coli
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
molecule keywords 4.5 S RNA
total genus 17
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxpA00
2PXVA 2PXTA 2PXFA 2PXBA 3KL4A 1QB2A 1HQ1A 2PXUA 2V3CC 2PXLA 2PXKA 1QZXA 5GAGi 3NDBB 5GAHi 2JQEA 2PXDA 3LQXA 2FFHA 3DM5A 2XXAA 2PXEA 1DULA 2PXPA 1MFQC 2PXQA
chains in the Genus database with same CATH superfamily
4OBMA 2PXVA 2JCGA 3SCFA 2AUWA 4MCTA 3IVPA 3H5TA 5DTQA 4X4BA 1LMB3 4ER7A 3QOWA 4Z5DA 2MQKA 3TRBA 2IVQA 1Y9QA 2J7UA 2PXPA 2MEZA 2AXVA 2O38A 3GN5A 3NZLA 1ZUGA 3JXDL 2D5VA 4NDWA 4YG7B 2PPXA 3ME5A 2CSFA 2IV1A 2R1JL 3GZDA 1OSLA 4X4DA 4MCXA 3BDNA 2FFHA 2XIUA 1PRUA 2LCVA 1XWRA 4F8DA 2HCNA 2BNNA 2PUBA 1R69A 5A7LA 2FJRA 4Z58A 2R63A 2OFYA 1PNRA 2H8RA 3OKZA 3KXAA 2HINA 2YBDA 1ZPQA 4J1WA 3UWPA 1AU7A 2M4HA 3OMTA 1GT0C 4GQMA 1R63A 2LYQA 2PXUA 2V3CC 1X57A 2LYSA 1PRVA 1U2ZA 3ZHIA 4YG4A 3MEJA 3TFLA 3OQMA 1QP0A 2OR1L 3PXPA 4Z59A 1JFSA 1IC8A 1ZZ9A 1QQBA 1L1MA 1QP7A 2CROA 1Y7YA 3F51A 3HZIB 3FMYA 3QWGA 1B0NA 2J7WA 2PUDA 1MFQC 2PXQA 3GBFA 2JVLA 1ZAYA 2XXQA 1WH6A 1WIZA 4PU8A 1JH9A 2B5AA 3PE5A 2BNOA 1UXCA 1PERL 3RZZA 3FYAA 1E3OC 4IVZA 3QFIA 4X4GA 3B7HA 2XJ3A 3GUUA 2PXEA 1NW3A 2PUFA 1QQAA 2BJCA 1WH8A 1JFTA 2PE5A 1QB2A 2HFZA 3GN5B 2PXLA 4OB4A 1SQ8A 1LCCA 3MLFA 1ZZ8A 5K98B 3KJXA 3QF3A 3SCGA 1RZRD 1DULA 4FN3A 3QYXA 3U3WA 3G7DA 2LYPA 1S7EA 2L8NA 3TEPA 4Z5CA 4YARA 1LLIA 4ER0A 3G0TA 3M9LA 3A9XA 5GAGi 2XSDC 4HRAA 2LYKA 1WETA 2LLVA 1RZRA 2MXDA 3LQXA 4WVLA 4PU4C 3OWQA 2EWTA 4X4EA 2KEJA 3D1NI 3S8QA 2GRLA 1DW9A 2PXFA 2GRMA 2PUGA 3KL4A 3QOXA 2WUSR 4EQZA 2PXKA 4YG1A 3BD1A 3JXCL 5DSXA 2L49A 2PUEA 2XXAA 3OP9A 2PXTA 4EKIA 1ZVVA 3UFDA 4IA8A 4I6UA 5DTRA 2VEOA 2EBYA 2LNMA 4X4FA 2ODRD 2IU7A 4Q2JA 3CECA 1BDIA 1VPWA 1X2LA 2BNMA 1LQCA 2XXPA 4X4HA 3A9YA 3CLCA 4X4CA 2ICTA 3A9ZA 3F52A 2KPJA 4PU3C 3JXBC 2LYJA 1UTXA 1YSEA 1BDHA 1NERA 1QPZA 4I6RA 3R09A 3ZHMA 2PXDA 2GZUA 1ZZBA 5DT2A 1ZZ6A 3DNVB 2LLWA 3GZCA 2XCJA 2AWIA 4EK9A 1RIOA 4X4IA 3GZDC 1HQ1A 3LISA 4FBIA 4JCXA 4ER5A 4JQDA 3NROA 1OCTC 2IUOA 2A6CA 1EFAA 2PIJA 2AXZA 2KZ8A 1JWLA 3F6WA 2LYRA 1QZXA 4DE8A 4ER6A 4YBAA 3ZPXA 1ADRA 4EKGA 3O9XA 2JQEA 3R1FA 2PUCA 3VWSA 3SX0A 1O4XA 3ZKCA 2LYLA 4PU7A 3QQ6A 4I6TA 1ZZ7A 3OQNA 3BS3A 2IVGA 2KEKA 3NXHA 3NDBB 5JUWA 3EUSA 4Z5HA 2ICPA 2L1PA 1DWKA 3TELA 4JCYA 3L1PA 2O4AA 3SR4A 1CQTA 3VK0A 5DRYA 2AXUA 1LCDA 4ER3A 4DE9A 3LFPA 1HF0A 3OQOA 2PXBA 2PUAA 4Y42A 1NEQA 1ZS4A 2HCSA 4EZIA 2AW6A 1RPEL 3KZ3A 2O49A 1RZSA 2WIUB 1ZZCA 2KEIA 5DRTA 3CROL 1POUA 4I8TA 3FYMA 2XI8A 3G5GA 2HSGA 1PRAA 4J1XA 3SCHA 4IWRA 5GAHi 2IVBA 4GHJA 1QP4A 1UXDA 3DM5A 5DTMA 4O8BA 2EF8A 1CJGA
chains in the Genus database with same CATH topology
2PXVA 2PXTA 2PXFA 2PXBA 3KL4A 1QB2A 1HQ1A 2PXUA 2V3CC 2PXLA 2PXKA 1QZXA 5GAGi 3NDBB 5GAHi 2JQEA 2PXDA 3LQXA 2FFHA 3DM5A 2XXAA 2PXEA 1DULA 2PXPA 1MFQC 2PXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXV A;  2PXT A;  2PXF A;  2PXB A;  3KL4 A;  1QB2 A;  1HQ1 A;  2PXU A;  2V3C C;  2PXL A;  2PXK A;  1QZX A;  5GAG i;  3NDB B;  5GAH i;  2JQE A;  2PXD A;  3LQX A;  2FFH A;  3DM5 A;  2XXA A;  2PXE A;  1DUL A;  2PXP A;  1MFQ C;  2PXQ A; 
#chains in the Genus database with same CATH topology
 4OBM A;  2PXV A;  2JCG A;  3SCF A;  2AUW A;  4MCT A;  3IVP A;  3H5T A;  5DTQ A;  4X4B A;  1LMB 3;  4ER7 A;  3QOW A;  4Z5D A;  2MQK A;  3TRB A;  2IVQ A;  1Y9Q A;  2J7U A;  2PXP A;  2MEZ A;  2AXV A;  2O38 A;  3GN5 A;  3NZL A;  1ZUG A;  3JXD L;  2D5V A;  4NDW A;  4YG7 B;  2PPX A;  3ME5 A;  2CSF A;  2IV1 A;  2R1J L;  3GZD A;  1OSL A;  4X4D A;  4MCX A;  3BDN A;  2FFH A;  2XIU A;  1PRU A;  2LCV A;  1XWR A;  4F8D A;  2HCN A;  2BNN A;  2PUB A;  1R69 A;  5A7L A;  2FJR A;  4Z58 A;  2R63 A;  2OFY A;  1PNR A;  2H8R A;  3OKZ A;  3KXA A;  2HIN A;  2YBD A;  1ZPQ A;  4J1W A;  3UWP A;  1AU7 A;  2M4H A;  3OMT A;  1GT0 C;  4GQM A;  1R63 A;  2LYQ A;  2PXU A;  2V3C C;  1X57 A;  2LYS A;  1PRV A;  1U2Z A;  3ZHI A;  4YG4 A;  3MEJ A;  3TFL A;  3OQM A;  1QP0 A;  2OR1 L;  3PXP A;  4Z59 A;  1JFS A;  1IC8 A;  1ZZ9 A;  1QQB A;  1L1M A;  1QP7 A;  2CRO A;  1Y7Y A;  3F51 A;  3HZI B;  3FMY A;  3QWG A;  1B0N A;  2J7W A;  2PUD A;  1MFQ C;  2PXQ A;  3GBF A;  2JVL A;  1ZAY A;  2XXQ A;  1WH6 A;  1WIZ A;  4PU8 A;  1JH9 A;  2B5A A;  3PE5 A;  2BNO A;  1UXC A;  1PER L;  3RZZ A;  3FYA A;  1E3O C;  4IVZ A;  3QFI A;  4X4G A;  3B7H A;  2XJ3 A;  3GUU A;  2PXE A;  1NW3 A;  2PUF A;  1QQA A;  2BJC A;  1WH8 A;  1JFT A;  2PE5 A;  1QB2 A;  2HFZ A;  3GN5 B;  2PXL A;  4OB4 A;  1SQ8 A;  1LCC A;  3MLF A;  1ZZ8 A;  5K98 B;  3KJX A;  3QF3 A;  3SCG A;  1RZR D;  1DUL A;  4FN3 A;  3QYX A;  3U3W A;  3G7D A;  2LYP A;  1S7E A;  2L8N A;  3TEP A;  4Z5C A;  4YAR A;  1LLI A;  4ER0 A;  3G0T A;  3M9L A;  3A9X A;  5GAG i;  2XSD C;  4HRA A;  2LYK A;  1WET A;  2LLV A;  1RZR A;  2MXD A;  3LQX A;  4WVL A;  4PU4 C;  3OWQ A;  2EWT A;  4X4E A;  2KEJ A;  3D1N I;  3S8Q A;  2GRL A;  1DW9 A;  2PXF A;  2GRM A;  2PUG A;  3KL4 A;  3QOX A;  2WUS R;  4EQZ A;  2PXK A;  4YG1 A;  3BD1 A;  3JXC L;  5DSX A;  2L49 A;  2PUE A;  2XXA A;  3OP9 A;  2PXT A;  4EKI A;  1ZVV A;  3UFD A;  4IA8 A;  4I6U A;  5DTR A;  2VEO A;  2EBY A;  2LNM A;  4X4F A;  2ODR D;  2IU7 A;  4Q2J A;  3CEC A;  1BDI A;  1VPW A;  1X2L A;  2BNM A;  1LQC A;  2XXP A;  4X4H A;  3A9Y A;  3CLC A;  4X4C A;  2ICT A;  3A9Z A;  3F52 A;  2KPJ A;  4PU3 C;  3JXB C;  2LYJ A;  1UTX A;  1YSE A;  1BDH A;  1NER A;  1QPZ A;  4I6R A;  3R09 A;  3ZHM A;  2PXD A;  2GZU A;  1ZZB A;  5DT2 A;  1ZZ6 A;  3DNV B;  2LLW A;  3GZC A;  2XCJ A;  2AWI A;  4EK9 A;  1RIO A;  4X4I A;  3GZD C;  1HQ1 A;  3LIS A;  4FBI A;  4JCX A;  4ER5 A;  4JQD A;  3NRO A;  1OCT C;  2IUO A;  2A6C A;  1EFA A;  2PIJ A;  2AXZ A;  2KZ8 A;  1JWL A;  3F6W A;  2LYR A;  1QZX A;  4DE8 A;  4ER6 A;  4YBA A;  3ZPX A;  1ADR A;  4EKG A;  3O9X A;  2JQE A;  3R1F A;  2PUC A;  3VWS A;  3SX0 A;  1O4X A;  3ZKC A;  2LYL A;  4PU7 A;  3QQ6 A;  4I6T A;  1ZZ7 A;  3OQN A;  3BS3 A;  2IVG A;  2KEK A;  3NXH A;  3NDB B;  5JUW A;  3EUS A;  4Z5H A;  2ICP A;  2L1P A;  1DWK A;  3TEL A;  4JCY A;  3L1P A;  2O4A A;  3SR4 A;  1CQT A;  3VK0 A;  5DRY A;  2AXU A;  1LCD A;  4ER3 A;  4DE9 A;  3LFP A;  1HF0 A;  3OQO A;  2PXB A;  2PUA A;  4Y42 A;  1NEQ A;  1ZS4 A;  2HCS A;  4EZI A;  2AW6 A;  1RPE L;  3KZ3 A;  2O49 A;  1RZS A;  2WIU B;  1ZZC A;  2KEI A;  5DRT A;  3CRO L;  1POU A;  4I8T A;  3FYM A;  2XI8 A;  3G5G A;  2HSG A;  1PRA A;  4J1X A;  3SCH A;  4IWR A;  5GAH i;  2IVB A;  4GHJ A;  1QP4 A;  1UXD A;  3DM5 A;  5DTM A;  4O8B A;  2EF8 A;  1CJG A; 
#chains in the Genus database with same CATH homology
 2PXV A;  2PXT A;  2PXF A;  2PXB A;  3KL4 A;  1QB2 A;  1HQ1 A;  2PXU A;  2V3C C;  2PXL A;  2PXK A;  1QZX A;  5GAG i;  3NDB B;  5GAH i;  2JQE A;  2PXD A;  3LQX A;  2FFH A;  3DM5 A;  2XXA A;  2PXE A;  1DUL A;  2PXP A;  1MFQ C;  2PXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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