The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
54
|
sequence length |
260
|
structure length |
218
|
Chain Sequence |
MKKKPFSILFMGIEDYATKGQKGRSDSLIVVTLDPKNKTMKMLSIPRDTRVQLASKTKINAAYSKGGKDETVETVENFLQIPIDKYVTVDFDGFKDVINEVGGIDVDVPEMHLNGEEALAYADFGRNDRQKQILNALIDRMSDKIAEKASENVETNIRITEGLALQQIYSGFTSKKIDTLSITGSDLYLGPNNTYYFEPDATNLEKVRKTLQEHLDYT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of the transcriptional regulator yvhJ from Bacillus subtilis.
rcsb |
| molecule keywords |
transcriptional regulator yvhJ
|
| molecule tags |
Transcription regulator
|
| source organism |
Bacillus subtilis subsp. subtilis
|
| total genus |
54
|
| structure length |
218
|
| sequence length |
260
|
| ec nomenclature | |
| pdb deposition date | 2010-07-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03816 | LytR_cpsA_psr | Cell envelope-related transcriptional attenuator domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | 434 Repressor (Amino-terminal Domain) |
#chains in the Genus database with same CATH superfamily 3NXH A; 3TEL A; 3OKZ A; 4OBM A; 3TEP A; 2XXP A; 3OWQ A; 4DE8 A; 3QFI A; 3NRO A; 3PE5 A; 2XXQ A; 4DE9 A; 3MEJ A; 3TFL A; #chains in the Genus database with same CATH topology 4Z58 A; 1POU A; 2O4A A; 2HSG A; 2LYK A; 1ZZC A; 1QPZ A; 4OBM A; 3SCG A; 1XWR A; 5K98 B; 1QP7 A; 3ZHI A; 2XI8 A; 4EZI A; 4Z59 A; 3FMY A; 3LFP A; 3SCH A; 1ZZ9 A; 2CSF A; 2PE5 A; 1RZR D; 3KJX A; 1BDI A; 3VK0 A; 2O49 A; 2CRO A; 3R09 A; 3JXC L; 1RIO A; 3H5T A; 2HCN A; 5DSX A; 4ER3 A; 1DW9 A; 1ZZB A; 2VEO A; 1Y9Q A; 3BDN A; 4YG1 A; 3A9X A; 3HZI B; 1RPE L; 1CJG A; 4GHJ A; 2JCG A; 3FYM A; 1U2Z A; 3TRB A; 3A9Z A; 1DUL A; 3U3W A; 2IVQ A; 1UXC A; 1JH9 A; 2IVG A; 3TFL A; 4IWR A; 3TEP A; 3NDB B; 3JXD L; 3QFI A; 3GZD C; 2XSD C; 3QYX A; 1JFT A; 1QQA A; 4GQM A; 1AU7 A; 1SQ8 A; 1QZX A; 2O38 A; 2A6C A; 4O8B A; 4PU7 A; 4EKI A; 4EQZ A; 2LYR A; 3SR4 A; 2WUS R; 3BD1 A; 4I6U A; 1UXD A; 1DWK A; 3A9Y A; 3QOW A; 3MEJ A; 2J7W A; 3GZD A; 2LYQ A; 3G7D A; 1QQB A; 4YAR A; 1GT0 C; 5DTQ A; 3PE5 A; 3G0T A; 2AW6 A; 2H8R A; 2LNM A; 5DRY A; 2IV1 A; 3BS3 A; 5GAG i; 2MEZ A; 3D1N I; 3EUS A; 3M9L A; 3QF3 A; 1ZAY A; 1X57 A; 4X4C A; 4X4F A; 3VWS A; 2B5A A; 2AXU A; 2EF8 A; 2XXP A; 2IU7 A; 3LQX A; 2FFH A; 1RZR A; 1L1M A; 3GUU A; 4EK9 A; 2PUG A; 1HQ1 A; 4X4I A; 5JUW A; 1OSL A; 1R63 A; 2BNO A; 2FJR A; 3KXA A; 2V3C C; 2PXD A; 3F6W A; 3GN5 A; 4X4B A; 4IVZ A; 2R1J L; 2WIU B; 4YBA A; 5DTM A; 3RZZ A; 1Y7Y A; 1ZZ8 A; 1MFQ C; 5GAH i; 3CLC A; 2OR1 L; 4DE8 A; 3PXP A; 2M4H A; 1ZS4 A; 2BNN A; 4YG7 B; 1OCT C; 3DNV B; 2EBY A; 2GRL A; 3DM5 A; 1LQC A; 2KEI A; 1JFS A; 1WH8 A; 1PRV A; 3GZC A; 2AWI A; 3LIS A; 3FYA A; 2KZ8 A; 3SCF A; 3OP9 A; 3QQ6 A; 5DT2 A; 2JQE A; 3O9X A; 2JVL A; 4Z5D A; 2GZU A; 3OQN A; 3F52 A; 4F8D A; 1IC8 A; 4YG4 A; 3NZL A; 3QOX A; 2GRM A; 2LYP A; 4ER6 A; 2LYJ A; 3OKZ A; 2D5V A; 3OQM A; 3IVP A; 4X4D A; 2LLV A; 2LLW A; 1E3O C; 1LCC A; 5DTR A; 4X4E A; 3NXH A; 4Y42 A; 2L8N A; 3OQO A; 4IA8 A; 4X4H A; 1EFA A; 2AUW A; 1PRA A; 2ICP A; 2EWT A; 4NDW A; 1ZZ6 A; 2PXK A; 2PUF A; 3KZ3 A; 3R1F A; 4J1W A; 2PXE A; 2HIN A; 3ME5 A; 3GN5 B; 1VPW A; 1PRU A; 4Q2J A; 2YBD A; 1LLI A; 4PU4 C; 5DRT A; 3S8Q A; 1UTX A; 4DE9 A; 2PXU A; 1QP0 A; 2L1P A; 4I8T A; 5A7L A; 4HRA A; 1ZPQ A; 2PUE A; 4PU8 A; 2PXF A; 1R69 A; 2XXQ A; 4JQD A; 3GBF A; 2PUA A; 1PNR A; 4OB4 A; 4ER7 A; 3KL4 A; 1LCD A; 3ZHM A; 3OMT A; 1NEQ A; 1X2L A; 1RZS A; 2MXD A; 4FBI A; 1HF0 A; 1BDH A; 4ER0 A; 3OWQ A; 2PUC A; 2ICT A; 3UFD A; 2KPJ A; 2PXL A; 2XXA A; 2PXQ A; 1LMB 3; 2PXV A; 2BNM A; 4JCX A; 1WET A; 2IUO A; 1QP4 A; 1NW3 A; 4Z5C A; 3ZKC A; 4I6R A; 2PUD A; 2XIU A; 2R63 A; 2BJC A; 2J7U A; 3CEC A; 1ZVV A; 2PXP A; 1O4X A; 2PIJ A; 1ADR A; 1B0N A; 4FN3 A; 3TEL A; 2OFY A; 3L1P A; 2AXV A; 3QWG A; 4EKG A; 1PER L; 3MLF A; 2XCJ A; 2HCS A; 4J1X A; 2LYS A; 2PUB A; 4WVL A; 2KEK A; 2LCV A; 1WIZ A; 4PU3 C; 3CRO L; 4X4G A; 1ZUG A; 2PPX A; 4Z5H A; 4ER5 A; 4JCY A; 1YSE A; 2MQK A; 3G5G A; 2AXZ A; 1ZZ7 A; 1QB2 A; 2IVB A; 1JWL A; 2XJ3 A; 1WH6 A; 3SX0 A; 3UWP A; 2PXT A; 2HFZ A; 4MCT A; 3B7H A; 4I6T A; 3NRO A; 4MCX A; 3F51 A; 1NER A; 2ODR D; 2L49 A; 1S7E A; 1CQT A; 3JXB C; 2PXB A; 2LYL A; 3ZPX A; 2KEJ A; #chains in the Genus database with same CATH homology 3TEL A; 5DT2 A; 2LNM A; 2VEO A; 3TEP A; 5DTR A; 2XXP A; 4DE8 A; 4EKG A; 3QFI A; 5DRY A; 4EZI A; 3GZD C; 2XXQ A; 2M4H A; 4Q2J A; 3A9X A; 3NXH A; 3SX0 A; 3UWP A; 2HCS A; 3GUU A; 2YBD A; 4EK9 A; 4WVL A; 1NW3 A; 5DTM A; 3NZL A; 3QOX A; 3A9Y A; 4ER6 A; 3QOW A; 3MEJ A; 4ER7 A; 2J7W A; 5JUW A; 2HFZ A; 5DRT A; 3OKZ A; 4OBM A; 3M9L A; 3GZD A; 2MXD A; 3NRO A; 4DE9 A; 3GZC A; 1U2Z A; 3R09 A; 2J7U A; 2ODR D; 3VWS A; 4ER5 A; 4EKI A; 4ER0 A; 3A9Z A; 2LLV A; 2HCN A; 2L1P A; 3OWQ A; 5DTQ A; 3SR4 A; 4EQZ A; 2LLW A; 3PE5 A; 5DSX A; 3ME5 A; 4HRA A; 4ER3 A; 3G0T A; 3ZPX A; 3TFL A;
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