3NZLA

Crystal structure of the n-terminal domain of dna-binding protein satb1 from homo sapiens, northeast structural genomics consortium target hr4435b
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
73
structure length
73
Chain Sequence
HHSHMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR4435B (CASP Target)
rcsb
molecule tags Transcription
source organism Homo sapiens
molecule keywords DNA-binding protein SATB1
total genus 21
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2010-07-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.70 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3nzlA00
2L1PA 4Q2JA 3NZLA
chains in the Genus database with same CATH superfamily
2AXZA 3A9YA 2PXQA 2IVQA 1DW9A 1Y9QA 4I6TA 1WH6A 4OB4A 3QYXA 2H8RA 1RZRD 3JXCL 2O4AA 1CQTA 2PXKA 3H5TA 1POUA 3G5GA 1ZZCA 3OP9A 2IVGA 1PRUA 1MFQC 2PXUA 1ZZ6A 4IWRA 3LQXA 2MQKA 4GHJA 3F52A 2AXVA 4X4FA 1QB2A 4YG7B 2LCVA 2LLWA 4MCTA 2ICPA 1PNRA 3A9ZA 2HCSA 5GAHi 3S8QA 2XSDC 4Z59A 4FBIA 3ZHMA 1ZZ7A 3D1NI 2PXEA 3PXPA 3OQMA 1LCCA 1CJGA 1ZUGA 4X4IA 2CROA 2L8NA 3TRBA 3M9LA 1RPEL 2XCJA 1NEQA 3QOWA 4IVZA 1L1MA 2BNMA 1UXCA 2LYRA 3G0TA 3SX0A 3SCHA 2IVBA 2PUAA 5DTMA 2LYQA 4JQDA 3IVPA 1PRVA 2KEKA 1QP4A 4I6UA 4DE9A 2HSGA 2IV1A 5K98B 3GZDA 3TEPA 4Z5DA 1ZS4A 2A6CA 2LYPA 2IU7A 4NDWA 4X4BA 2BJCA 1LQCA 2PXVA 2J7WA 3DM5A 1PERL 4EZIA 1DULA 2KZ8A 5DRYA 2AW6A 4YBAA 2LLVA 1ZZ9A 2JCGA 2OFYA 5GAGi 1JFSA 2PUCA 2OR1L 2HCNA 2KEJA 3GZDC 4O8BA 3A9XA 4WVLA 2PXDA 2GZUA 4ER7A 4PU7A 4F8DA 3QQ6A 1LLIA 3OQNA 2GRLA 1RZRA 2AWIA 1QQBA 1QQAA 2R1JL 3B7HA 1GT0C 1R63A 1RIOA 2M4HA 1UTXA 3OKZA 2XXQA 3CLCA 2KEIA 2PUFA 2GRMA 3SCGA 2EF8A 1DWKA 4Z58A 3JXDL 3UWPA 2B5AA 2PXLA 1LCDA 2PUBA 1O4XA 1NERA 2PUEA 2XJ3A 1HF0A 3GZCA 2LYSA 2MXDA 4DE8A 2VEOA 2PIJA 4HRAA 2D5VA 2BNOA 1X2LA 1WETA 4X4DA 1ZAYA 4Y42A 3RZZA 4Q2JA 2FFHA 1ADRA 4X4CA 3CECA 4Z5CA 2HFZA 2L49A 3LISA 3L1PA 3ZKCA 4ER3A 2WUSR 4JCXA 2O49A 4Z5HA 1JFTA 4X4GA 1S7EA 1LMB3 1ZVVA 3SCFA 3F51A 1Y7YA 2CSFA 3TELA 2AXUA 4JCYA 3KXAA 1JH9A 3NZLA 1BDHA 1QP7A 4GQMA 2PE5A 2HINA 2FJRA 1R69A 3LFPA 5DT2A 4IA8A 2XXAA 2O38A 1ZZ8A 2PXBA 3QWGA 1WH8A 4X4HA 2R63A 3EUSA 1OCTC 1ZZBA 4ER6A 2MEZA 1UXDA 4EQZA 1IC8A 3GUUA 2ICTA 5DTRA 4MCXA 1E3OC 2LYJA 2JVLA 1XWRA 2KPJA 3GN5A 2IUOA 3R09A 3CROL 4I8TA 2XXPA 1VPWA 1YSEA 4YARA 3JXBC 1PRAA 3OQOA 1ZPQA 5A7LA 1NW3A 3BDNA 4PU8A 3NDBB 3QF3A 2YBDA 1OSLA 1AU7A 2LYLA 5DSXA 1X57A 3MEJA 3SR4A 4EK9A 2BNNA 5DRTA 1B0NA 3BS3A 2XIUA 3FYMA 3DNVB 2PUGA 3HZIB 2V3CC 2JQEA 3KL4A 4PU4C 2J7UA 2LNMA 4YG1A 1JWLA 3ME5A 4YG4A 4OBMA 2EWTA 2PXPA 4EKGA 2XI8A 1HQ1A 3GN5B 3UFDA 3GBFA 3R1FA 1EFAA 3F6WA 3FMYA 2L1PA 3OMTA 3BD1A 2PXFA 2PUDA 4ER5A 3O9XA 4PU3C 3QOXA 5DTQA 1U2ZA 3G7DA 4J1WA 3VWSA 3NXHA 5JUWA 3VK0A 3KJXA 2AUWA 1BDIA 2ODRD 3ZHIA 3TFLA 4FN3A 2EBYA 2WIUB 4J1XA 3ZPXA 3OWQA 3KZ3A 2PPXA 1WIZA 3FYAA 1QP0A 1RZSA 4X4EA 3NROA 1QPZA 4I6RA 3PE5A 3U3WA 3MLFA 2LYKA 1QZXA 4ER0A 4EKIA 1SQ8A 3QFIA 2PXTA
chains in the Genus database with same CATH topology
3M9LA 3A9ZA 3NXHA 5JUWA 4DE9A 4EQZA 2HCSA 2HCNA 3A9YA 4Q2JA 3GUUA 3GZDA 3QOWA 1NW3A 3TEPA 5DTRA 3NROA 5DT2A 2HFZA 3GZDC 4ER3A 3GZCA 2M4HA 2MXDA 4DE8A 3A9XA 2ODRD 4WVLA 3PE5A 3OKZA 2LNMA 2L1PA 2XXQA 2YBDA 2J7UA 2J7WA 3G0TA 3R09A 2VEOA 4ER7A 4EZIA 3SX0A 2XXPA 4ER0A 3TFLA 4EKIA 5DRYA 5DSXA 3ME5A 4HRAA 3TELA 3MEJA 4ER6A 4ER5A 3SR4A 4EK9A 2LLVA 2LLWA 4OBMA 5DRTA 3UWPA 3ZPXA 5DTMA 3OWQA 3QOXA 5DTQA 1U2ZA 4EKGA 3QFIA 3NZLA 3VWSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L1P A;  4Q2J A;  3NZL A; 
#chains in the Genus database with same CATH topology
 2AXZ A;  3A9Y A;  2PXQ A;  2IVQ A;  1DW9 A;  1Y9Q A;  4I6T A;  1WH6 A;  4OB4 A;  3QYX A;  2H8R A;  1RZR D;  3JXC L;  2O4A A;  1CQT A;  2PXK A;  3H5T A;  1POU A;  3G5G A;  1ZZC A;  3OP9 A;  2IVG A;  1PRU A;  1MFQ C;  2PXU A;  1ZZ6 A;  4IWR A;  3LQX A;  2MQK A;  4GHJ A;  3F52 A;  2AXV A;  4X4F A;  1QB2 A;  4YG7 B;  2LCV A;  2LLW A;  4MCT A;  2ICP A;  1PNR A;  3A9Z A;  2HCS A;  5GAH i;  3S8Q A;  2XSD C;  4Z59 A;  4FBI A;  3ZHM A;  1ZZ7 A;  3D1N I;  2PXE A;  3PXP A;  3OQM A;  1LCC A;  1CJG A;  1ZUG A;  4X4I A;  2CRO A;  2L8N A;  3TRB A;  3M9L A;  1RPE L;  2XCJ A;  1NEQ A;  3QOW A;  4IVZ A;  1L1M A;  2BNM A;  1UXC A;  2LYR A;  3G0T A;  3SX0 A;  3SCH A;  2IVB A;  2PUA A;  5DTM A;  2LYQ A;  4JQD A;  3IVP A;  1PRV A;  2KEK A;  1QP4 A;  4I6U A;  4DE9 A;  2HSG A;  2IV1 A;  5K98 B;  3GZD A;  3TEP A;  4Z5D A;  1ZS4 A;  2A6C A;  2LYP A;  2IU7 A;  4NDW A;  4X4B A;  2BJC A;  1LQC A;  2PXV A;  2J7W A;  3DM5 A;  1PER L;  4EZI A;  1DUL A;  2KZ8 A;  5DRY A;  2AW6 A;  4YBA A;  2LLV A;  1ZZ9 A;  2JCG A;  2OFY A;  5GAG i;  1JFS A;  2PUC A;  2OR1 L;  2HCN A;  2KEJ A;  3GZD C;  4O8B A;  3A9X A;  4WVL A;  2PXD A;  2GZU A;  4ER7 A;  4PU7 A;  4F8D A;  3QQ6 A;  1LLI A;  3OQN A;  2GRL A;  1RZR A;  2AWI A;  1QQB A;  1QQA A;  2R1J L;  3B7H A;  1GT0 C;  1R63 A;  1RIO A;  2M4H A;  1UTX A;  3OKZ A;  2XXQ A;  3CLC A;  2KEI A;  2PUF A;  2GRM A;  3SCG A;  2EF8 A;  1DWK A;  4Z58 A;  3JXD L;  3UWP A;  2B5A A;  2PXL A;  1LCD A;  2PUB A;  1O4X A;  1NER A;  2PUE A;  2XJ3 A;  1HF0 A;  3GZC A;  2LYS A;  2MXD A;  4DE8 A;  2VEO A;  2PIJ A;  4HRA A;  2D5V A;  2BNO A;  1X2L A;  1WET A;  4X4D A;  1ZAY A;  4Y42 A;  3RZZ A;  4Q2J A;  2FFH A;  1ADR A;  4X4C A;  3CEC A;  4Z5C A;  2HFZ A;  2L49 A;  3LIS A;  3L1P A;  3ZKC A;  4ER3 A;  2WUS R;  4JCX A;  2O49 A;  4Z5H A;  1JFT A;  4X4G A;  1S7E A;  1LMB 3;  1ZVV A;  3SCF A;  3F51 A;  1Y7Y A;  2CSF A;  3TEL A;  2AXU A;  4JCY A;  3KXA A;  1JH9 A;  3NZL A;  1BDH A;  1QP7 A;  4GQM A;  2PE5 A;  2HIN A;  2FJR A;  1R69 A;  3LFP A;  5DT2 A;  4IA8 A;  2XXA A;  2O38 A;  1ZZ8 A;  2PXB A;  3QWG A;  1WH8 A;  4X4H A;  2R63 A;  3EUS A;  1OCT C;  1ZZB A;  4ER6 A;  2MEZ A;  1UXD A;  4EQZ A;  1IC8 A;  3GUU A;  2ICT A;  5DTR A;  4MCX A;  1E3O C;  2LYJ A;  2JVL A;  1XWR A;  2KPJ A;  3GN5 A;  2IUO A;  3R09 A;  3CRO L;  4I8T A;  2XXP A;  1VPW A;  1YSE A;  4YAR A;  3JXB C;  1PRA A;  3OQO A;  1ZPQ A;  5A7L A;  1NW3 A;  3BDN A;  4PU8 A;  3NDB B;  3QF3 A;  2YBD A;  1OSL A;  1AU7 A;  2LYL A;  5DSX A;  1X57 A;  3MEJ A;  3SR4 A;  4EK9 A;  2BNN A;  5DRT A;  1B0N A;  3BS3 A;  2XIU A;  3FYM A;  3DNV B;  2PUG A;  3HZI B;  2V3C C;  2JQE A;  3KL4 A;  4PU4 C;  2J7U A;  2LNM A;  4YG1 A;  1JWL A;  3ME5 A;  4YG4 A;  4OBM A;  2EWT A;  2PXP A;  4EKG A;  2XI8 A;  1HQ1 A;  3GN5 B;  3UFD A;  3GBF A;  3R1F A;  1EFA A;  3F6W A;  3FMY A;  2L1P A;  3OMT A;  3BD1 A;  2PXF A;  2PUD A;  4ER5 A;  3O9X A;  4PU3 C;  3QOX A;  5DTQ A;  1U2Z A;  3G7D A;  4J1W A;  3VWS A;  3NXH A;  5JUW A;  3VK0 A;  3KJX A;  2AUW A;  1BDI A;  2ODR D;  3ZHI A;  3TFL A;  4FN3 A;  2EBY A;  2WIU B;  4J1X A;  3ZPX A;  3OWQ A;  3KZ3 A;  2PPX A;  1WIZ A;  3FYA A;  1QP0 A;  1RZS A;  4X4E A;  3NRO A;  1QPZ A;  4I6R A;  3PE5 A;  3U3W A;  3MLF A;  2LYK A;  1QZX A;  4ER0 A;  4EKI A;  1SQ8 A;  3QFI A;  2PXT A; 
#chains in the Genus database with same CATH homology
 3M9L A;  3A9Z A;  3NXH A;  5JUW A;  4DE9 A;  4EQZ A;  2HCS A;  2HCN A;  3A9Y A;  4Q2J A;  3GUU A;  3GZD A;  3QOW A;  1NW3 A;  3TEP A;  5DTR A;  3NRO A;  5DT2 A;  2HFZ A;  3GZD C;  4ER3 A;  3GZC A;  2M4H A;  2MXD A;  4DE8 A;  3A9X A;  2ODR D;  4WVL A;  3PE5 A;  3OKZ A;  2LNM A;  2L1P A;  2XXQ A;  2YBD A;  2J7U A;  2J7W A;  3G0T A;  3R09 A;  2VEO A;  4ER7 A;  4EZI A;  3SX0 A;  2XXP A;  4ER0 A;  3TFL A;  4EKI A;  5DRY A;  5DSX A;  3ME5 A;  4HRA A;  3TEL A;  3MEJ A;  4ER6 A;  4ER5 A;  3SR4 A;  4EK9 A;  2LLV A;  2LLW A;  4OBM A;  5DRT A;  3UWP A;  3ZPX A;  5DTM A;  3OWQ A;  3QOX A;  5DTQ A;  1U2Z A;  4EKG A;  3QFI A;  3NZL A;  3VWS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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