3NROA

Crystal structure of putative transcriptional factor lmo1026 from listeria monocytogenes (fragment 52-321), northeast structural genomics consortium target lmr194
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
253
structure length
235
Chain Sequence
EKKKPFSVLLMGSGRADTIILATANKQQNAVEMVSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQDRQRDVIIGIANKVSIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFAPDKTDLERIITMFKKSLDIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target LmR194
rcsb
molecule tags Structural genomics, unknown function
source organism Listeria monocytogenes
molecule keywords Lmo1026 protein
total genus 47
structure length 235
sequence length 253
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3nroA00
2XXQA 2XXPA 3OWQA 3NXHA 4OBMA 3TELA 3NROA 4DE9A 3OKZA 4DE8A 3TFLA 3TEPA 3MEJA 3PE5A 3QFIA
chains in the Genus database with same CATH superfamily
1X57A 2PUBA 4HRAA 4MCTA 1JH9A 1UTXA 2PXEA 3SR4A 1RZRD 3O9XA 1U2ZA 2AUWA 3A9XA 3SCHA 1LMB3 2BJCA 2YBDA 4Z5HA 3F52A 2PUGA 2J7WA 3QOXA 3R1FA 5A7LA 2PXKA 2MXDA 3OMTA 1LLIA 3KZ3A 3CLCA 3FYAA 3ME5A 1ZS4A 4J1XA 3A9YA 4PU4C 4Z5CA 1ZPQA 4X4EA 2EBYA 1Y7YA 2KEKA 2JQEA 3TFLA 4JQDA 4I6RA 1UXCA 1RPEL 3SCFA 3BS3A 2IUOA 3UFDA 1E3OC 2J7UA 1QB2A 2LCVA 1DW9A 3JXDL 4Y42A 3U3WA 3QOWA 5GAHi 3JXCL 4I6TA 4PU8A 2HSGA 3GUUA 2ICPA 3OP9A 2IU7A 1ZZ7A 1PRAA 2IVBA 4NDWA 4PU7A 3DNVB 1Y9QA 2PE5A 4IA8A 2L1PA 1RZRA 2R63A 1QPZA 2IV1A 3NZLA 3H5TA 2BNMA 1ZZBA 5DT2A 3LQXA 2AW6A 2GZUA 2H8RA 4I8TA 3TRBA 4X4IA 2AXVA 4EKGA 4X4DA 5DRTA 1JWLA 2VEOA 2XXAA 3FMYA 1PERL 3OWQA 3NXHA 1QP7A 3GZDA 1ADRA 2M4HA 2FJRA 3B7HA 5GAGi 4F8DA 3OQOA 2LYJA 2LYLA 3TELA 4PU3C 5JUWA 2WIUB 3GN5B 4ER6A 1BDIA 5DTMA 2WUSR 4O8BA 4OBMA 1HF0A 5DTQA 4GQMA 1R63A 3ZPXA 1YSEA 3G5GA 4GHJA 1CQTA 1JFTA 1ZZCA 3RZZA 1JFSA 4Z59A 2AXZA 1DULA 2KPJA 3BD1A 3CECA 1ZZ8A 1RZSA 1QQBA 3VK0A 4JCYA 3OKZA 3TEPA 3FYMA 3D1NI 5DTRA 1DWKA 3ZKCA 4EQZA 2PUDA 3MEJA 1UXDA 1PNRA 3QYXA 4I6UA 3OQMA 3PXPA 1R69A 2HCSA 2LYQA 3L1PA 1NERA 1WETA 4ER0A 1VPWA 3GZCA 1HQ1A 2XSDC 2O4AA 4YG1A 4YBAA 2GRMA 1QP4A 3NDBB 2OR1L 1O4XA 1MFQC 3QF3A 2AXUA 3BDNA 2EF8A 2XIUA 5DSXA 2D5VA 4Z5DA 1QZXA 1ZUGA 3HZIB 3G7DA 3GN5A 2JCGA 2OFYA 4EZIA 4EK9A 4EKIA 3SX0A 4MCXA 2PXFA 3QWGA 4YARA 2XXQA 3A9ZA 1IC8A 4X4FA 3IVPA 2JVLA 3F6WA 3F51A 2PXVA 1SQ8A 2IVGA 3GZDC 3SCGA 3LFPA 2AWIA 1NEQA 3MLFA 5DRYA 2CSFA 4YG4A 1CJGA 1OSLA 1ZAYA 2ICTA 1WH8A 2PXQA 2XCJA 2XJ3A 3NROA 2KEJA 3ZHMA 2XI8A 2A6CA 1EFAA 3G0TA 2GRLA 5K98B 1ZVVA 2CROA 2PXLA 2LLVA 3CROL 3JXBC 4IWRA 3QFIA 2XXPA 3S8QA 1LCCA 1RIOA 1WIZA 3R09A 4X4GA 4DE9A 1ZZ9A 2PPXA 4JCXA 4ER7A 2R1JL 1LCDA 3UWPA 3GBFA 4J1WA 3KXAA 4WVLA 2HCNA 2L49A 2MEZA 2LYKA 1OCTC 3KJXA 1ZZ6A 1LQCA 2PXPA 2PXBA 3KL4A 4X4CA 2BNNA 2PUEA 4X4HA 3PE5A 3M9LA 1XWRA 2PXUA 3QQ6A 1PRVA 1X2LA 2BNOA 2FFHA 2LYSA 2LYRA 4OB4A 2HFZA 3ZHIA 2KZ8A 2LNMA 2MQKA 1NW3A 3OQNA 4FN3A 1POUA 2PIJA 1WH6A 2EWTA 2L8NA 3EUSA 2B5AA 2PUFA 2PUCA 1S7EA 2ODRD 1PRUA 4YG7B 2PXDA 1QP0A 4ER3A 4Q2JA 2LLWA 2KEIA 4DE8A 2HINA 2IVQA 2O38A 1GT0C 2LYPA 4Z58A 2O49A 1L1MA 1BDHA 1B0NA 3DM5A 4X4BA 2PUAA 4IVZA 2PXTA 2V3CC 1QQAA 4ER5A 3VWSA 4FBIA 1AU7A 3LISA
chains in the Genus database with same CATH topology
2LLWA 2XXQA 2XXPA 3A9ZA 3GZCA 4HRAA 3NROA 4EQZA 2HFZA 3QOXA 2HCNA 3TFLA 2LNMA 4DE8A 5DSXA 2MXDA 3MEJA 1NW3A 3R09A 3GUUA 4DE9A 3TELA 2L1PA 4EKGA 4ER3A 3G0TA 2J7UA 3SR4A 5DRTA 5JUWA 4ER6A 3GZDC 1U2ZA 4EZIA 3NZLA 4EK9A 4ER7A 4EKIA 2HCSA 2VEOA 3A9XA 3ME5A 5DRYA 2ODRD 3QOWA 3PE5A 3SX0A 3UWPA 3A9YA 5DTMA 3OWQA 3NXHA 4OBMA 3M9LA 5DT2A 2LLVA 3GZDA 2YBDA 3OKZA 3VWSA 4ER0A 5DTQA 4ER5A 3ZPXA 3TEPA 2M4HA 5DTRA 3QFIA 4Q2JA 4WVLA 2J7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XXQ A;  2XXP A;  3OWQ A;  3NXH A;  4OBM A;  3TEL A;  3NRO A;  4DE9 A;  3OKZ A;  4DE8 A;  3TFL A;  3TEP A;  3MEJ A;  3PE5 A;  3QFI A; 
#chains in the Genus database with same CATH topology
 1X57 A;  2PUB A;  4HRA A;  4MCT A;  1JH9 A;  1UTX A;  2PXE A;  3SR4 A;  1RZR D;  3O9X A;  1U2Z A;  2AUW A;  3A9X A;  3SCH A;  1LMB 3;  2BJC A;  2YBD A;  4Z5H A;  3F52 A;  2PUG A;  2J7W A;  3QOX A;  3R1F A;  5A7L A;  2PXK A;  2MXD A;  3OMT A;  1LLI A;  3KZ3 A;  3CLC A;  3FYA A;  3ME5 A;  1ZS4 A;  4J1X A;  3A9Y A;  4PU4 C;  4Z5C A;  1ZPQ A;  4X4E A;  2EBY A;  1Y7Y A;  2KEK A;  2JQE A;  3TFL A;  4JQD A;  4I6R A;  1UXC A;  1RPE L;  3SCF A;  3BS3 A;  2IUO A;  3UFD A;  1E3O C;  2J7U A;  1QB2 A;  2LCV A;  1DW9 A;  3JXD L;  4Y42 A;  3U3W A;  3QOW A;  5GAH i;  3JXC L;  4I6T A;  4PU8 A;  2HSG A;  3GUU A;  2ICP A;  3OP9 A;  2IU7 A;  1ZZ7 A;  1PRA A;  2IVB A;  4NDW A;  4PU7 A;  3DNV B;  1Y9Q A;  2PE5 A;  4IA8 A;  2L1P A;  1RZR A;  2R63 A;  1QPZ A;  2IV1 A;  3NZL A;  3H5T A;  2BNM A;  1ZZB A;  5DT2 A;  3LQX A;  2AW6 A;  2GZU A;  2H8R A;  4I8T A;  3TRB A;  4X4I A;  2AXV A;  4EKG A;  4X4D A;  5DRT A;  1JWL A;  2VEO A;  2XXA A;  3FMY A;  1PER L;  3OWQ A;  3NXH A;  1QP7 A;  3GZD A;  1ADR A;  2M4H A;  2FJR A;  3B7H A;  5GAG i;  4F8D A;  3OQO A;  2LYJ A;  2LYL A;  3TEL A;  4PU3 C;  5JUW A;  2WIU B;  3GN5 B;  4ER6 A;  1BDI A;  5DTM A;  2WUS R;  4O8B A;  4OBM A;  1HF0 A;  5DTQ A;  4GQM A;  1R63 A;  3ZPX A;  1YSE A;  3G5G A;  4GHJ A;  1CQT A;  1JFT A;  1ZZC A;  3RZZ A;  1JFS A;  4Z59 A;  2AXZ A;  1DUL A;  2KPJ A;  3BD1 A;  3CEC A;  1ZZ8 A;  1RZS A;  1QQB A;  3VK0 A;  4JCY A;  3OKZ A;  3TEP A;  3FYM A;  3D1N I;  5DTR A;  1DWK A;  3ZKC A;  4EQZ A;  2PUD A;  3MEJ A;  1UXD A;  1PNR A;  3QYX A;  4I6U A;  3OQM A;  3PXP A;  1R69 A;  2HCS A;  2LYQ A;  3L1P A;  1NER A;  1WET A;  4ER0 A;  1VPW A;  3GZC A;  1HQ1 A;  2XSD C;  2O4A A;  4YG1 A;  4YBA A;  2GRM A;  1QP4 A;  3NDB B;  2OR1 L;  1O4X A;  1MFQ C;  3QF3 A;  2AXU A;  3BDN A;  2EF8 A;  2XIU A;  5DSX A;  2D5V A;  4Z5D A;  1QZX A;  1ZUG A;  3HZI B;  3G7D A;  3GN5 A;  2JCG A;  2OFY A;  4EZI A;  4EK9 A;  4EKI A;  3SX0 A;  4MCX A;  2PXF A;  3QWG A;  4YAR A;  2XXQ A;  3A9Z A;  1IC8 A;  4X4F A;  3IVP A;  2JVL A;  3F6W A;  3F51 A;  2PXV A;  1SQ8 A;  2IVG A;  3GZD C;  3SCG A;  3LFP A;  2AWI A;  1NEQ A;  3MLF A;  5DRY A;  2CSF A;  4YG4 A;  1CJG A;  1OSL A;  1ZAY A;  2ICT A;  1WH8 A;  2PXQ A;  2XCJ A;  2XJ3 A;  3NRO A;  2KEJ A;  3ZHM A;  2XI8 A;  2A6C A;  1EFA A;  3G0T A;  2GRL A;  5K98 B;  1ZVV A;  2CRO A;  2PXL A;  2LLV A;  3CRO L;  3JXB C;  4IWR A;  3QFI A;  2XXP A;  3S8Q A;  1LCC A;  1RIO A;  1WIZ A;  3R09 A;  4X4G A;  4DE9 A;  1ZZ9 A;  2PPX A;  4JCX A;  4ER7 A;  2R1J L;  1LCD A;  3UWP A;  3GBF A;  4J1W A;  3KXA A;  4WVL A;  2HCN A;  2L49 A;  2MEZ A;  2LYK A;  1OCT C;  3KJX A;  1ZZ6 A;  1LQC A;  2PXP A;  2PXB A;  3KL4 A;  4X4C A;  2BNN A;  2PUE A;  4X4H A;  3PE5 A;  3M9L A;  1XWR A;  2PXU A;  3QQ6 A;  1PRV A;  1X2L A;  2BNO A;  2FFH A;  2LYS A;  2LYR A;  4OB4 A;  2HFZ A;  3ZHI A;  2KZ8 A;  2LNM A;  2MQK A;  1NW3 A;  3OQN A;  4FN3 A;  1POU A;  2PIJ A;  1WH6 A;  2EWT A;  2L8N A;  3EUS A;  2B5A A;  2PUF A;  2PUC A;  1S7E A;  2ODR D;  1PRU A;  4YG7 B;  2PXD A;  1QP0 A;  4ER3 A;  4Q2J A;  2LLW A;  2KEI A;  4DE8 A;  2HIN A;  2IVQ A;  2O38 A;  1GT0 C;  2LYP A;  4Z58 A;  2O49 A;  1L1M A;  1BDH A;  1B0N A;  3DM5 A;  4X4B A;  2PUA A;  4IVZ A;  2PXT A;  2V3C C;  1QQA A;  4ER5 A;  3VWS A;  4FBI A;  1AU7 A;  3LIS A; 
#chains in the Genus database with same CATH homology
 2LLW A;  2XXQ A;  2XXP A;  3A9Z A;  3GZC A;  4HRA A;  3NRO A;  4EQZ A;  2HFZ A;  3QOX A;  2HCN A;  3TFL A;  2LNM A;  4DE8 A;  5DSX A;  2MXD A;  3MEJ A;  1NW3 A;  3R09 A;  3GUU A;  4DE9 A;  3TEL A;  2L1P A;  4EKG A;  4ER3 A;  3G0T A;  2J7U A;  3SR4 A;  5DRT A;  5JUW A;  4ER6 A;  3GZD C;  1U2Z A;  4EZI A;  3NZL A;  4EK9 A;  4ER7 A;  4EKI A;  2HCS A;  2VEO A;  3A9X A;  3ME5 A;  5DRY A;  2ODR D;  3QOW A;  3PE5 A;  3SX0 A;  3UWP A;  3A9Y A;  5DTM A;  3OWQ A;  3NXH A;  4OBM A;  3M9L A;  5DT2 A;  2LLV A;  3GZD A;  2YBD A;  3OKZ A;  3VWS A;  4ER0 A;  5DTQ A;  4ER5 A;  3ZPX A;  3TEP A;  2M4H A;  5DTR A;  3QFI A;  4Q2J A;  4WVL A;  2J7W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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