3NROA

Crystal structure of putative transcriptional factor lmo1026 from listeria monocytogenes (fragment 52-321), northeast structural genomics consortium target lmr194
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
253
structure length
235
Chain Sequence
EKKKPFSVLLMGSGRADTIILATANKQQNAVEMVSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQDRQRDVIIGIANKVSIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFAPDKTDLERIITMFKKSLDIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target LmR194
rcsb
molecule tags Structural genomics, unknown function
source organism Listeria monocytogenes
molecule keywords Lmo1026 protein
total genus 47
structure length 235
sequence length 253
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3nroA00
3QFIA 4OBMA 3TELA 4DE8A 3TEPA 3TFLA 3NROA 4DE9A 3OKZA 3PE5A 2XXPA 2XXQA 3OWQA 3NXHA 3MEJA
chains in the Genus database with same CATH superfamily
3D1NI 3F6WA 1BDHA 3JXBC 4PU8A 1QP7A 3QQ6A 3R09A 2WIUB 1PRUA 3RZZA 2O4AA 2LYRA 2JCGA 4Z5CA 3G0TA 1RPEL 3G7DA 2KEKA 2OR1L 4IVZA 4FBIA 1NEQA 3A9XA 3KL4A 3GN5B 2WUSR 4PU4C 2A6CA 4EZIA 4Z5HA 3TRBA 2PUAA 3QOWA 1JWLA 2IVGA 1XWRA 4WVLA 4EK9A 1HQ1A 4ER7A 3L1PA 2GZUA 1PRAA 4X4GA 2KPJA 3JXDL 1WIZA 3O9XA 3KZ3A 5DTQA 4NDWA 2GRMA 2MXDA 5GAGi 3LISA 2FFHA 1HF0A 3DM5A 5K98B 1NW3A 3ZHIA 4YG4A 2EBYA 3F51A 3SR4A 1CQTA 1MFQC 3QFIA 2JVLA 2YBDA 2VEOA 3DNVB 2XXPA 4PU3C 2AUWA 2PXLA 2MEZA 1RZRD 3BS3A 1JFSA 2PXEA 1BDIA 4YG1A 2LCVA 3QWGA 4MCTA 4X4CA 2L49A 3MEJA 1S7EA 1L1MA 2PUFA 1WETA 2BJCA 2PXFA 2LLVA 3ME5A 2HCSA 3UWPA 3OQMA 3R1FA 1PRVA 1R63A 3MLFA 4X4BA 1IC8A 1RZRA 3OMTA 5DRTA 1E3OC 4X4IA 3KXAA 1CJGA 4EKGA 1B0NA 1QB2A 2LYPA 4DE8A 3SCGA 3PXPA 3HZIB 2FJRA 1QPZA 1ZPQA 4JQDA 2PXDA 1PNRA 2KZ8A 3OQNA 2LYLA 4YARA 2M4HA 2LNMA 2PE5A 4Y42A 3FMYA 3IVPA 3CLCA 4JCXA 2PIJA 2OFYA 1DWKA 4I6TA 4F8DA 2J7UA 1ZZ8A 4HRAA 2PUEA 3OWQA 3UFDA 3U3WA 4O8BA 2H8RA 3EUSA 3BDNA 1ZZBA 4X4EA 5JUWA 2AW6A 1X57A 3PE5A 4X4DA 2EF8A 3QOXA 1O4XA 3BD1A 3TELA 2XCJA 2PXPA 3GN5A 3F52A 4IWRA 1OCTC 2XIUA 2ODRD 3SCHA 4Z5DA 1ZVVA 2J7WA 2LYQA 1ZZ7A 2L1PA 1R69A 3ZHMA 3SX0A 3M9LA 5DSXA 2ICTA 4I8TA 5A7LA 1YSEA 3B7HA 4OBMA 4YG7B 4ER3A 1AU7A 5DTRA 1NERA 2BNMA 3GUUA 4I6UA 2IV1A 1QQAA 1LCCA 3NXHA 5DT2A 4Q2JA 3NZLA 2HSGA 1ADRA 2KEJA 2IU7A 3ZKCA 4PU7A 3CROL 3FYAA 4DE9A 2LYJA 3QYXA 2XI8A 3S8QA 4OB4A 4JCYA 2D5VA 1POUA 3LFPA 1UXDA 3VK0A 1QP0A 5DRYA 1LLIA 2O49A 1UTXA 3G5GA 1DW9A 3VWSA 2ICPA 1JFTA 3KJXA 2JQEA 4J1WA 1EFAA 2PUBA 1RZSA 2R1JL 4X4FA 2AXUA 2KEIA 1DULA 3FYMA 2PXQA 1LQCA 4Z58A 2PPXA 1SQ8A 2AWIA 2MQKA 4FN3A 1U2ZA 4X4HA 2PXKA 1X2LA 2XSDC 4ER6A 4GHJA 4GQMA 3NDBB 3A9YA 2BNOA 1RIOA 3SCFA 3GZCA 1ZS4A 3GZDC 3CECA 4ER0A 2LYKA 3ZPXA 4J1XA 2PXBA 2R63A 1QZXA 5GAHi 2PUDA 3OQOA 3TEPA 2HINA 2PUCA 2LYSA 1LMB3 4EQZA 1JH9A 3OKZA 1PERL 3GBFA 2AXVA 2B5AA 3OP9A 4Z59A 3H5TA 2XXQA 1VPWA 4I6RA 2EWTA 1OSLA 2BNNA 1QQBA 3GZDA 2XJ3A 2CROA 1Y7YA 2IUOA 1QP4A 3QF3A 3NROA 2PXVA 1WH8A 2IVQA 2PXTA 2PUGA 2IVBA 3LQXA 4MCXA 3JXCL 4IA8A 2PXUA 2GRLA 1LCDA 1WH6A 2HFZA 1ZZ9A 1GT0C 2CSFA 1ZUGA 2V3CC 1ZZ6A 4ER5A 3TFLA 1ZAYA 1Y9QA 1UXCA 2XXAA 4YBAA 2L8NA 2HCNA 5DTMA 3A9ZA 1ZZCA 2AXZA 2LLWA 4EKIA 2O38A
chains in the Genus database with same CATH topology
5DRYA 2J7UA 3SX0A 3M9LA 2HFZA 3G0TA 5DSXA 3TELA 4HRAA 4WVLA 1NW3A 1U2ZA 3OWQA 4EK9A 4OBMA 3GZDA 5DRTA 4ER7A 4ER3A 3TEPA 2M4HA 5DTRA 4ER6A 4ER5A 3TFLA 3SR4A 3VWSA 4DE9A 4EKGA 3A9YA 3A9XA 2LNMA 3MEJA 3QFIA 3GZCA 3GUUA 3GZDC 2ODRD 2HCNA 4EQZA 5DTMA 5DTQA 2YBDA 3A9ZA 2VEOA 3NROA 3OKZA 5JUWA 2XXPA 2LLVA 4DE8A 3ME5A 4ER0A 3NXHA 3PE5A 4EZIA 2J7WA 3R09A 2HCSA 3UWPA 2MXDA 3QOXA 3ZPXA 2LLWA 2L1PA 3QOWA 5DT2A 4Q2JA 3NZLA 4EKIA 2XXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QFI A;  4OBM A;  3TEL A;  4DE8 A;  3TEP A;  3TFL A;  3NRO A;  4DE9 A;  3OKZ A;  3PE5 A;  2XXP A;  2XXQ A;  3OWQ A;  3NXH A;  3MEJ A; 
#chains in the Genus database with same CATH topology
 3D1N I;  3F6W A;  1BDH A;  3JXB C;  4PU8 A;  1QP7 A;  3QQ6 A;  3R09 A;  2WIU B;  1PRU A;  3RZZ A;  2O4A A;  2LYR A;  2JCG A;  4Z5C A;  3G0T A;  1RPE L;  3G7D A;  2KEK A;  2OR1 L;  4IVZ A;  4FBI A;  1NEQ A;  3A9X A;  3KL4 A;  3GN5 B;  2WUS R;  4PU4 C;  2A6C A;  4EZI A;  4Z5H A;  3TRB A;  2PUA A;  3QOW A;  1JWL A;  2IVG A;  1XWR A;  4WVL A;  4EK9 A;  1HQ1 A;  4ER7 A;  3L1P A;  2GZU A;  1PRA A;  4X4G A;  2KPJ A;  3JXD L;  1WIZ A;  3O9X A;  3KZ3 A;  5DTQ A;  4NDW A;  2GRM A;  2MXD A;  5GAG i;  3LIS A;  2FFH A;  1HF0 A;  3DM5 A;  5K98 B;  1NW3 A;  3ZHI A;  4YG4 A;  2EBY A;  3F51 A;  3SR4 A;  1CQT A;  1MFQ C;  3QFI A;  2JVL A;  2YBD A;  2VEO A;  3DNV B;  2XXP A;  4PU3 C;  2AUW A;  2PXL A;  2MEZ A;  1RZR D;  3BS3 A;  1JFS A;  2PXE A;  1BDI A;  4YG1 A;  2LCV A;  3QWG A;  4MCT A;  4X4C A;  2L49 A;  3MEJ A;  1S7E A;  1L1M A;  2PUF A;  1WET A;  2BJC A;  2PXF A;  2LLV A;  3ME5 A;  2HCS A;  3UWP A;  3OQM A;  3R1F A;  1PRV A;  1R63 A;  3MLF A;  4X4B A;  1IC8 A;  1RZR A;  3OMT A;  5DRT A;  1E3O C;  4X4I A;  3KXA A;  1CJG A;  4EKG A;  1B0N A;  1QB2 A;  2LYP A;  4DE8 A;  3SCG A;  3PXP A;  3HZI B;  2FJR A;  1QPZ A;  1ZPQ A;  4JQD A;  2PXD A;  1PNR A;  2KZ8 A;  3OQN A;  2LYL A;  4YAR A;  2M4H A;  2LNM A;  2PE5 A;  4Y42 A;  3FMY A;  3IVP A;  3CLC A;  4JCX A;  2PIJ A;  2OFY A;  1DWK A;  4I6T A;  4F8D A;  2J7U A;  1ZZ8 A;  4HRA A;  2PUE A;  3OWQ A;  3UFD A;  3U3W A;  4O8B A;  2H8R A;  3EUS A;  3BDN A;  1ZZB A;  4X4E A;  5JUW A;  2AW6 A;  1X57 A;  3PE5 A;  4X4D A;  2EF8 A;  3QOX A;  1O4X A;  3BD1 A;  3TEL A;  2XCJ A;  2PXP A;  3GN5 A;  3F52 A;  4IWR A;  1OCT C;  2XIU A;  2ODR D;  3SCH A;  4Z5D A;  1ZVV A;  2J7W A;  2LYQ A;  1ZZ7 A;  2L1P A;  1R69 A;  3ZHM A;  3SX0 A;  3M9L A;  5DSX A;  2ICT A;  4I8T A;  5A7L A;  1YSE A;  3B7H A;  4OBM A;  4YG7 B;  4ER3 A;  1AU7 A;  5DTR A;  1NER A;  2BNM A;  3GUU A;  4I6U A;  2IV1 A;  1QQA A;  1LCC A;  3NXH A;  5DT2 A;  4Q2J A;  3NZL A;  2HSG A;  1ADR A;  2KEJ A;  2IU7 A;  3ZKC A;  4PU7 A;  3CRO L;  3FYA A;  4DE9 A;  2LYJ A;  3QYX A;  2XI8 A;  3S8Q A;  4OB4 A;  4JCY A;  2D5V A;  1POU A;  3LFP A;  1UXD A;  3VK0 A;  1QP0 A;  5DRY A;  1LLI A;  2O49 A;  1UTX A;  3G5G A;  1DW9 A;  3VWS A;  2ICP A;  1JFT A;  3KJX A;  2JQE A;  4J1W A;  1EFA A;  2PUB A;  1RZS A;  2R1J L;  4X4F A;  2AXU A;  2KEI A;  1DUL A;  3FYM A;  2PXQ A;  1LQC A;  4Z58 A;  2PPX A;  1SQ8 A;  2AWI A;  2MQK A;  4FN3 A;  1U2Z A;  4X4H A;  2PXK A;  1X2L A;  2XSD C;  4ER6 A;  4GHJ A;  4GQM A;  3NDB B;  3A9Y A;  2BNO A;  1RIO A;  3SCF A;  3GZC A;  1ZS4 A;  3GZD C;  3CEC A;  4ER0 A;  2LYK A;  3ZPX A;  4J1X A;  2PXB A;  2R63 A;  1QZX A;  5GAH i;  2PUD A;  3OQO A;  3TEP A;  2HIN A;  2PUC A;  2LYS A;  1LMB 3;  4EQZ A;  1JH9 A;  3OKZ A;  1PER L;  3GBF A;  2AXV A;  2B5A A;  3OP9 A;  4Z59 A;  3H5T A;  2XXQ A;  1VPW A;  4I6R A;  2EWT A;  1OSL A;  2BNN A;  1QQB A;  3GZD A;  2XJ3 A;  2CRO A;  1Y7Y A;  2IUO A;  1QP4 A;  3QF3 A;  3NRO A;  2PXV A;  1WH8 A;  2IVQ A;  2PXT A;  2PUG A;  2IVB A;  3LQX A;  4MCX A;  3JXC L;  4IA8 A;  2PXU A;  2GRL A;  1LCD A;  1WH6 A;  2HFZ A;  1ZZ9 A;  1GT0 C;  2CSF A;  1ZUG A;  2V3C C;  1ZZ6 A;  4ER5 A;  3TFL A;  1ZAY A;  1Y9Q A;  1UXC A;  2XXA A;  4YBA A;  2L8N A;  2HCN A;  5DTM A;  3A9Z A;  1ZZC A;  2AXZ A;  2LLW A;  4EKI A;  2O38 A; 
#chains in the Genus database with same CATH homology
 5DRY A;  2J7U A;  3SX0 A;  3M9L A;  2HFZ A;  3G0T A;  5DSX A;  3TEL A;  4HRA A;  4WVL A;  1NW3 A;  1U2Z A;  3OWQ A;  4EK9 A;  4OBM A;  3GZD A;  5DRT A;  4ER7 A;  4ER3 A;  3TEP A;  2M4H A;  5DTR A;  4ER6 A;  4ER5 A;  3TFL A;  3SR4 A;  3VWS A;  4DE9 A;  4EKG A;  3A9Y A;  3A9X A;  2LNM A;  3MEJ A;  3QFI A;  3GZC A;  3GUU A;  3GZD C;  2ODR D;  2HCN A;  4EQZ A;  5DTM A;  5DTQ A;  2YBD A;  3A9Z A;  2VEO A;  3NRO A;  3OKZ A;  5JUW A;  2XXP A;  2LLV A;  4DE8 A;  3ME5 A;  4ER0 A;  3NXH A;  3PE5 A;  4EZI A;  2J7W A;  3R09 A;  2HCS A;  3UWP A;  2MXD A;  3QOX A;  3ZPX A;  2LLW A;  2L1P A;  3QOW A;  5DT2 A;  4Q2J A;  3NZL A;  4EKI A;  2XXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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