3NZLA

Crystal structure of the n-terminal domain of dna-binding protein satb1 from homo sapiens, northeast structural genomics consortium target hr4435b
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
73
structure length
73
Chain Sequence
HHSHMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR4435B (CASP Target)
rcsb
molecule tags Transcription
source organism Homo sapiens
molecule keywords DNA-binding protein SATB1
total genus 21
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2010-07-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.70 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3nzlA00
2L1PA 3NZLA 4Q2JA
chains in the Genus database with same CATH superfamily
3GZDC 2IVGA 2AXVA 1X2LA 3NDBB 1BDIA 3A9ZA 4OBMA 2JCGA 5JUWA 3DM5A 2JQEA 2JVLA 5DSXA 4J1XA 1ZZ6A 1JFSA 1PRAA 1ZVVA 3B7HA 2WUSR 1UXCA 3F52A 4Z5HA 1XWRA 2PUBA 2LYPA 1HF0A 4I6RA 3A9YA 3GZCA 2PXEA 1WETA 2PXFA 3TELA 1JFTA 3JXBC 1QQBA 3JXDL 2LYQA 1ADRA 1L1MA 2PIJA 2XJ3A 3QOXA 2PUAA 2L49A 1DULA 3LISA 1ZPQA 2MXDA 3EUSA 1QB2A 5GAHi 2AWIA 2AXUA 2BNMA 2IUOA 3BDNA 4EZIA 3HZIB 2H8RA 2PXLA 3JXCL 3ZHMA 4EKGA 5DTMA 2ICPA 4IWRA 3A9XA 1PERL 2O4AA 1QZXA 1Y7YA 1B0NA 1WH6A 2HINA 4YG4A 3O9XA 1HQ1A 2IVQA 1NEQA 2ODRD 2AUWA 1RZRA 4O8BA 1LCCA 2XI8A 1JH9A 2IVBA 2PXVA 1UXDA 1DW9A 3KXAA 3OQMA 2XXQA 1DWKA 3BS3A 2LLVA 3GBFA 2CROA 1POUA 2PXKA 2KPJA 3PXPA 4X4DA 3OKZA 2PXTA 2PXUA 3F6WA 1UTXA 2HSGA 3M9LA 2XXPA 2A6CA 1S7EA 2AXZA 1AU7A 2PUFA 1QQAA 2XSDC 3LQXA 1LQCA 2LYKA 2PE5A 3F51A 1LLIA 4MCXA 2BJCA 4X4EA 2PUDA 2KZ8A 1JWLA 4PU4C 2FFHA 4YARA 3G0TA 2J7WA 1ZZBA 2BNOA 4YG7B 2IV1A 2IU7A 5GAGi 4DE9A 4X4CA 2LYSA 3OP9A 1NW3A 2R63A 3OMTA 4Z5CA 1U2ZA 1R69A 3OQOA 5DTRA 2D5VA 4Z59A 2R1JL 1PNRA 3QWGA 1OSLA 1CQTA 3KL4A 3MLFA 3ZPXA 4YG1A 3KJXA 2GZUA 1ZZ9A 3GN5B 3TFLA 2LNMA 3R1FA 3RZZA 1RZSA 1RZRD 1ZZ8A 4Y42A 2PXBA 4I8TA 1QP0A 3L1PA 2PXDA 1ZZCA 3R09A 2XXAA 4GHJA 4PU8A 3GZDA 3CECA 3SR4A 2LYLA 1ZUGA 1LCDA 2O38A 3G5GA 2BNNA 1O4XA 1CJGA 3LFPA 1NERA 2M4HA 3UWPA 3QQ6A 5DRYA 4X4BA 2FJRA 4Z5DA 5DT2A 2MEZA 2OFYA 3H5TA 3S8QA 1PRUA 3OQNA 2B5AA 2O49A 3SCFA 3DNVB 2PXPA 1QP4A 2AW6A 2LLWA 3IVPA 2HCNA 3SCHA 3OWQA 2HFZA 2EBYA 1LMB3 2LYRA 3PE5A 2EWTA 4FN3A 4FBIA 4I6TA 1OCTC 4ER7A 5A7LA 4MCTA 2WIUB 3FYMA 1QPZA 2PUEA 1GT0C 3NROA 3G7DA 3MEJA 1ZAYA 4J1WA 4X4IA 2YBDA 4IA8A 2L8NA 3QF3A 3BD1A 3VK0A 4I6UA 3SX0A 1MFQC 2GRMA 3QYXA 1ZS4A 4PU7A 4YBAA 1BDHA 4ER5A 4ER0A 2PXQA 5DRTA 4F8DA 3UFDA 4ER6A 3FMYA 2EF8A 1PRVA 4OB4A 2HCSA 4GQMA 2L1PA 1VPWA 4JQDA 1IC8A 1QP7A 2PUCA 3QOWA 3NXHA 4PU3C 3TRBA 2GRLA 3GUUA 4JCYA 3KZ3A 3U3WA 2VEOA 1Y9QA 3ZKCA 5K98B 4Z58A 2V3CC 4JCXA 4X4GA 1X57A 2LYJA 2PPXA 1RPEL 2CSFA 4EQZA 1E3OC 1SQ8A 3QFIA 3CLCA 1EFAA 3TEPA 2KEJA 2XIUA 3ME5A 4X4HA 2KEIA 4EKIA 1RIOA 2OR1L 3NZLA 5DTQA 3D1NI 4X4FA 3GN5A 4EK9A 4Q2JA 4WVLA 4HRAA 1WIZA 3VWSA 2PUGA 3CROL 1R63A 3SCGA 1WH8A 2ICTA 3FYAA 2LCVA 1YSEA 1ZZ7A 2XCJA 4IVZA 4DE8A 4NDWA 2MQKA 2J7UA 3ZHIA 4ER3A 2KEKA
chains in the Genus database with same CATH topology
1U2ZA 3M9LA 3PE5A 3TFLA 4EQZA 2XXPA 3GUUA 3GZDC 2LNMA 4EZIA 3QFIA 5DTRA 3SX0A 3VWSA 3TEPA 4EKGA 2HCSA 3ME5A 2M4HA 4ER7A 3UWPA 2XXQA 5DTMA 2L1PA 4EKIA 2LLVA 2VEOA 3A9ZA 4OBMA 3R09A 5JUWA 3A9XA 4DE9A 4ER5A 3QOWA 3GZDA 4ER0A 3NZLA 3A9YA 3GZCA 3NROA 5DTQA 3NXHA 3QOXA 5DRYA 5DRTA 5DSXA 3SR4A 5DT2A 3MEJA 1NW3A 4DE8A 4ER6A 3ZPXA 3TELA 4EK9A 2ODRD 4Q2JA 2LLWA 2J7UA 4WVLA 2MXDA 2YBDA 3OKZA 2HCNA 4ER3A 4HRAA 3G0TA 3OWQA 2HFZA 2J7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L1P A;  3NZL A;  4Q2J A; 
#chains in the Genus database with same CATH topology
 3GZD C;  2IVG A;  2AXV A;  1X2L A;  3NDB B;  1BDI A;  3A9Z A;  4OBM A;  2JCG A;  5JUW A;  3DM5 A;  2JQE A;  2JVL A;  5DSX A;  4J1X A;  1ZZ6 A;  1JFS A;  1PRA A;  1ZVV A;  3B7H A;  2WUS R;  1UXC A;  3F52 A;  4Z5H A;  1XWR A;  2PUB A;  2LYP A;  1HF0 A;  4I6R A;  3A9Y A;  3GZC A;  2PXE A;  1WET A;  2PXF A;  3TEL A;  1JFT A;  3JXB C;  1QQB A;  3JXD L;  2LYQ A;  1ADR A;  1L1M A;  2PIJ A;  2XJ3 A;  3QOX A;  2PUA A;  2L49 A;  1DUL A;  3LIS A;  1ZPQ A;  2MXD A;  3EUS A;  1QB2 A;  5GAH i;  2AWI A;  2AXU A;  2BNM A;  2IUO A;  3BDN A;  4EZI A;  3HZI B;  2H8R A;  2PXL A;  3JXC L;  3ZHM A;  4EKG A;  5DTM A;  2ICP A;  4IWR A;  3A9X A;  1PER L;  2O4A A;  1QZX A;  1Y7Y A;  1B0N A;  1WH6 A;  2HIN A;  4YG4 A;  3O9X A;  1HQ1 A;  2IVQ A;  1NEQ A;  2ODR D;  2AUW A;  1RZR A;  4O8B A;  1LCC A;  2XI8 A;  1JH9 A;  2IVB A;  2PXV A;  1UXD A;  1DW9 A;  3KXA A;  3OQM A;  2XXQ A;  1DWK A;  3BS3 A;  2LLV A;  3GBF A;  2CRO A;  1POU A;  2PXK A;  2KPJ A;  3PXP A;  4X4D A;  3OKZ A;  2PXT A;  2PXU A;  3F6W A;  1UTX A;  2HSG A;  3M9L A;  2XXP A;  2A6C A;  1S7E A;  2AXZ A;  1AU7 A;  2PUF A;  1QQA A;  2XSD C;  3LQX A;  1LQC A;  2LYK A;  2PE5 A;  3F51 A;  1LLI A;  4MCX A;  2BJC A;  4X4E A;  2PUD A;  2KZ8 A;  1JWL A;  4PU4 C;  2FFH A;  4YAR A;  3G0T A;  2J7W A;  1ZZB A;  2BNO A;  4YG7 B;  2IV1 A;  2IU7 A;  5GAG i;  4DE9 A;  4X4C A;  2LYS A;  3OP9 A;  1NW3 A;  2R63 A;  3OMT A;  4Z5C A;  1U2Z A;  1R69 A;  3OQO A;  5DTR A;  2D5V A;  4Z59 A;  2R1J L;  1PNR A;  3QWG A;  1OSL A;  1CQT A;  3KL4 A;  3MLF A;  3ZPX A;  4YG1 A;  3KJX A;  2GZU A;  1ZZ9 A;  3GN5 B;  3TFL A;  2LNM A;  3R1F A;  3RZZ A;  1RZS A;  1RZR D;  1ZZ8 A;  4Y42 A;  2PXB A;  4I8T A;  1QP0 A;  3L1P A;  2PXD A;  1ZZC A;  3R09 A;  2XXA A;  4GHJ A;  4PU8 A;  3GZD A;  3CEC A;  3SR4 A;  2LYL A;  1ZUG A;  1LCD A;  2O38 A;  3G5G A;  2BNN A;  1O4X A;  1CJG A;  3LFP A;  1NER A;  2M4H A;  3UWP A;  3QQ6 A;  5DRY A;  4X4B A;  2FJR A;  4Z5D A;  5DT2 A;  2MEZ A;  2OFY A;  3H5T A;  3S8Q A;  1PRU A;  3OQN A;  2B5A A;  2O49 A;  3SCF A;  3DNV B;  2PXP A;  1QP4 A;  2AW6 A;  2LLW A;  3IVP A;  2HCN A;  3SCH A;  3OWQ A;  2HFZ A;  2EBY A;  1LMB 3;  2LYR A;  3PE5 A;  2EWT A;  4FN3 A;  4FBI A;  4I6T A;  1OCT C;  4ER7 A;  5A7L A;  4MCT A;  2WIU B;  3FYM A;  1QPZ A;  2PUE A;  1GT0 C;  3NRO A;  3G7D A;  3MEJ A;  1ZAY A;  4J1W A;  4X4I A;  2YBD A;  4IA8 A;  2L8N A;  3QF3 A;  3BD1 A;  3VK0 A;  4I6U A;  3SX0 A;  1MFQ C;  2GRM A;  3QYX A;  1ZS4 A;  4PU7 A;  4YBA A;  1BDH A;  4ER5 A;  4ER0 A;  2PXQ A;  5DRT A;  4F8D A;  3UFD A;  4ER6 A;  3FMY A;  2EF8 A;  1PRV A;  4OB4 A;  2HCS A;  4GQM A;  2L1P A;  1VPW A;  4JQD A;  1IC8 A;  1QP7 A;  2PUC A;  3QOW A;  3NXH A;  4PU3 C;  3TRB A;  2GRL A;  3GUU A;  4JCY A;  3KZ3 A;  3U3W A;  2VEO A;  1Y9Q A;  3ZKC A;  5K98 B;  4Z58 A;  2V3C C;  4JCX A;  4X4G A;  1X57 A;  2LYJ A;  2PPX A;  1RPE L;  2CSF A;  4EQZ A;  1E3O C;  1SQ8 A;  3QFI A;  3CLC A;  1EFA A;  3TEP A;  2KEJ A;  2XIU A;  3ME5 A;  4X4H A;  2KEI A;  4EKI A;  1RIO A;  2OR1 L;  3NZL A;  5DTQ A;  3D1N I;  4X4F A;  3GN5 A;  4EK9 A;  4Q2J A;  4WVL A;  4HRA A;  1WIZ A;  3VWS A;  2PUG A;  3CRO L;  1R63 A;  3SCG A;  1WH8 A;  2ICT A;  3FYA A;  2LCV A;  1YSE A;  1ZZ7 A;  2XCJ A;  4IVZ A;  4DE8 A;  4NDW A;  2MQK A;  2J7U A;  3ZHI A;  4ER3 A;  2KEK A; 
#chains in the Genus database with same CATH homology
 1U2Z A;  3M9L A;  3PE5 A;  3TFL A;  4EQZ A;  2XXP A;  3GUU A;  3GZD C;  2LNM A;  4EZI A;  3QFI A;  5DTR A;  3SX0 A;  3VWS A;  3TEP A;  4EKG A;  2HCS A;  3ME5 A;  2M4H A;  4ER7 A;  3UWP A;  2XXQ A;  5DTM A;  2L1P A;  4EKI A;  2LLV A;  2VEO A;  3A9Z A;  4OBM A;  3R09 A;  5JUW A;  3A9X A;  4DE9 A;  4ER5 A;  3QOW A;  3GZD A;  4ER0 A;  3NZL A;  3A9Y A;  3GZC A;  3NRO A;  5DTQ A;  3NXH A;  3QOX A;  5DRY A;  5DRT A;  5DSX A;  3SR4 A;  5DT2 A;  3MEJ A;  1NW3 A;  4DE8 A;  4ER6 A;  3ZPX A;  3TEL A;  4EK9 A;  2ODR D;  4Q2J A;  2LLW A;  2J7U A;  4WVL A;  2MXD A;  2YBD A;  3OKZ A;  2HCN A;  4ER3 A;  4HRA A;  3G0T A;  3OWQ A;  2HFZ A;  2J7W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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