3OKZA

Crystal structure of protein gbs0355 from streptococcus agalactiae, northeast structural genomics consortium target sar127
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
297
structure length
297
Chain Sequence
KSKSHAIEETKPFSILLMGVDTGSEHRKSKWSGNSDSMILVTINPKTNKTTMTSLERDVLIKLSGPKNNGQTGVEAKLNAAYASGGAEMALMTVQDLLDINVDYFMQINMQGLVDLVNAVGGITVTNKFDFPISIAANEPEYKAVVEPGTHKINGEQALVYSRMRYDDPEGDYGRQKRQREVIQKVLKKILALNSISSYKKILSAVSNNMQTNIEISSKTIPNLLAYKDSLEHIKSYQLKGEDATLSDGGSYQILTKKHLLAVQNRIKKELDKKRSKTLKTSAILYEDYYGLEHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target SaR127
rcsb
molecule tags Structural genomics, unknown function
source organism Streptococcus agalactiae
molecule keywords Putative uncharacterized protein gbs0355
total genus 81
structure length 297
sequence length 297
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3okzA00
3OKZA 3NXHA 3MEJA 3OWQA 3TELA 3NROA 3PE5A 2XXQA 3TEPA 4DE8A 2XXPA 4DE9A 3QFIA 4OBMA 3TFLA
chains in the Genus database with same CATH superfamily
2HCNA 2XXAA 3OQMA 2IVQA 3PXPA 4OBMA 1WETA 4X4FA 2V3CC 3QYXA 1NW3A 1QP0A 2PXEA 2ICTA 1BDIA 2PUEA 2LLWA 4YG4A 3M9LA 4YG1A 3U3WA 1LQCA 3KL4A 2LNMA 1LCCA 2GRLA 1EFAA 1NEQA 1HF0A 4PU7A 1PNRA 4ER5A 3GN5A 1YSEA 4EZIA 4Z59A 5DT2A 2KEKA 3L1PA 2KZ8A 1VPWA 2BNNA 4X4IA 1ZZ9A 4DE9A 2JCGA 3R09A 1ADRA 2O38A 5DSXA 3CROL 2PUGA 2WUSR 2PXPA 2PXFA 2LYJA 1UXDA 1OSLA 2PXTA 1BDHA 2PXBA 4DE8A 1JH9A 3TFLA 3ZHMA 1WH8A 4ER7A 1QP7A 3QFIA 1ZZ6A 4O8BA 2O49A 3VK0A 2XXQA 2JQEA 4MCXA 4YBAA 3KJXA 1JFTA 1DW9A 2MQKA 3SCHA 2A6CA 3TRBA 3GZCA 3ZHIA 2AWIA 3ZPXA 1ZZCA 4EK9A 2LYPA 3NXHA 3SR4A 2EF8A 3GN5B 4I8TA 3F6WA 3LISA 2MXDA 2IVBA 3G7DA 4I6RA 1CQTA 2R63A 5K98B 1R69A 4YG7B 5DTRA 2PUDA 3QQ6A 1ZPQA 1JWLA 3UFDA 3SCGA 3OP9A 3PE5A 4NDWA 2MEZA 2KEJA 2AXVA 2PUBA 3OKZA 2PXDA 1RZRD 1CJGA 1ZS4A 2HINA 1PERL 2AUWA 4X4DA 1DULA 2IV1A 3NZLA 1ZZBA 4PU3C 3NDBB 3RZZA 1QZXA 4I6TA 4Z58A 3KXAA 2HCSA 4I6UA 4F8DA 1U2ZA 5DTMA 3A9ZA 1LLIA 5DRYA 4IVZA 2PUFA 1LMB3 2HFZA 3S8QA 2XSDC 4Y42A 1ZZ8A 4X4BA 2IVGA 1ZZ7A 1RZRA 2J7UA 4YARA 1ZUGA 4EQZA 2PXKA 3QOXA 3ZKCA 2KEIA 2PPXA 3G0TA 2R1JL 3B7HA 2AW6A 1WH6A 3A9YA 1R63A 1SQ8A 3LQXA 4HRAA 3JXDL 2CSFA 4J1XA 3F51A 3UWPA 4Z5CA 2PE5A 1UXCA 1JFSA 1X57A 2LYQA 4X4CA 1QB2A 3EUSA 2WIUB 2KPJA 2J7WA 2XI8A 4X4GA 2H8RA 4IA8A 4PU8A 3KZ3A 2PXUA 1XWRA 2B5AA 1WIZA 2PUCA 5DRTA 4ER3A 4FBIA 3BDNA 5GAHi 5JUWA 2AXZA 2PXLA 3VWSA 1RZSA 3A9XA 3CLCA 3FYMA 3R1FA 4PU4C 4WVLA 2LLVA 2FJRA 3G5GA 4Z5HA 2GRMA 3QOWA 4ER6A 2CROA 3GBFA 1RIOA 4ER0A 2D5VA 4EKGA 3OQNA 3D1NI 1Y7YA 2VEOA 1QPZA 3CECA 2AXUA 1E3OC 2XJ3A 4JCXA 3TELA 3GUUA 3OQOA 3OMTA 1POUA 2LYLA 3MLFA 4GHJA 3HZIB 2LCVA 3BS3A 2IUOA 3FMYA 1PRVA 3QWGA 2XCJA 2PIJA 2ICPA 1L1MA 2YBDA 2BNMA 2BNOA 2L1PA 3GZDA 3DNVB 2PXVA 4GQMA 1LCDA 2OR1L 3NROA 1QQBA 3TEPA 1ZVVA 4OB4A 1QQAA 2L49A 1UTXA 1PRUA 3LFPA 4X4EA 2OFYA 1B0NA 3ME5A 5A7LA 3O9XA 3H5TA 2M4HA 4X4HA 1IC8A 1DWKA 4Z5DA 1QP4A 4MCTA 4FN3A 2PUAA 1Y9QA 2LYSA 1S7EA 2FFHA 1ZAYA 2JVLA 2PXQA 3MEJA 1RPEL 3SCFA 2EWTA 3JXCL 2HSGA 3OWQA 1GT0C 2LYKA 4JCYA 2ODRD 2BJCA 4EKIA 2EBYA 4Q2JA 2XXPA 3BD1A 1X2LA 3SX0A 3DM5A 1HQ1A 2LYRA 1NERA 3F52A 2XIUA 1MFQC 2IU7A 5GAGi 2L8NA 3FYAA 4IWRA 3IVPA 2GZUA 1PRAA 3JXBC 1AU7A 1O4XA 5DTQA 1OCTC 4JQDA 2O4AA 4J1WA 3GZDC 3QF3A
chains in the Genus database with same CATH topology
2HCNA 2MXDA 2VEOA 3A9YA 2HFZA 3MEJA 3R09A 3PE5A 4HRAA 3VWSA 2XXQA 2YBDA 3A9XA 4OBMA 3UWPA 5DSXA 3OKZA 4WVLA 2LLVA 3TELA 3OWQA 2L1PA 2HCSA 3GUUA 3GZDA 3ME5A 1NW3A 2ODRD 2J7UA 4ER5A 4EKIA 4EZIA 3GZCA 5DTRA 2M4HA 3QOWA 4Q2JA 5DT2A 3ZPXA 4ER6A 4DE8A 2XXPA 4EK9A 4EQZA 3QOXA 2LLWA 5DRTA 3TFLA 5DTQA 1U2ZA 3SX0A 5DTMA 3NXHA 3SR4A 3M9LA 4ER0A 4ER7A 3NROA 4EKGA 3G0TA 2LNMA 3A9ZA 4ER3A 3TEPA 4DE9A 2J7WA 3QFIA 3NZLA 5DRYA 3GZDC 5JUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OKZ A;  3NXH A;  3MEJ A;  3OWQ A;  3TEL A;  3NRO A;  3PE5 A;  2XXQ A;  3TEP A;  4DE8 A;  2XXP A;  4DE9 A;  3QFI A;  4OBM A;  3TFL A; 
#chains in the Genus database with same CATH topology
 2HCN A;  2XXA A;  3OQM A;  2IVQ A;  3PXP A;  4OBM A;  1WET A;  4X4F A;  2V3C C;  3QYX A;  1NW3 A;  1QP0 A;  2PXE A;  2ICT A;  1BDI A;  2PUE A;  2LLW A;  4YG4 A;  3M9L A;  4YG1 A;  3U3W A;  1LQC A;  3KL4 A;  2LNM A;  1LCC A;  2GRL A;  1EFA A;  1NEQ A;  1HF0 A;  4PU7 A;  1PNR A;  4ER5 A;  3GN5 A;  1YSE A;  4EZI A;  4Z59 A;  5DT2 A;  2KEK A;  3L1P A;  2KZ8 A;  1VPW A;  2BNN A;  4X4I A;  1ZZ9 A;  4DE9 A;  2JCG A;  3R09 A;  1ADR A;  2O38 A;  5DSX A;  3CRO L;  2PUG A;  2WUS R;  2PXP A;  2PXF A;  2LYJ A;  1UXD A;  1OSL A;  2PXT A;  1BDH A;  2PXB A;  4DE8 A;  1JH9 A;  3TFL A;  3ZHM A;  1WH8 A;  4ER7 A;  1QP7 A;  3QFI A;  1ZZ6 A;  4O8B A;  2O49 A;  3VK0 A;  2XXQ A;  2JQE A;  4MCX A;  4YBA A;  3KJX A;  1JFT A;  1DW9 A;  2MQK A;  3SCH A;  2A6C A;  3TRB A;  3GZC A;  3ZHI A;  2AWI A;  3ZPX A;  1ZZC A;  4EK9 A;  2LYP A;  3NXH A;  3SR4 A;  2EF8 A;  3GN5 B;  4I8T A;  3F6W A;  3LIS A;  2MXD A;  2IVB A;  3G7D A;  4I6R A;  1CQT A;  2R63 A;  5K98 B;  1R69 A;  4YG7 B;  5DTR A;  2PUD A;  3QQ6 A;  1ZPQ A;  1JWL A;  3UFD A;  3SCG A;  3OP9 A;  3PE5 A;  4NDW A;  2MEZ A;  2KEJ A;  2AXV A;  2PUB A;  3OKZ A;  2PXD A;  1RZR D;  1CJG A;  1ZS4 A;  2HIN A;  1PER L;  2AUW A;  4X4D A;  1DUL A;  2IV1 A;  3NZL A;  1ZZB A;  4PU3 C;  3NDB B;  3RZZ A;  1QZX A;  4I6T A;  4Z58 A;  3KXA A;  2HCS A;  4I6U A;  4F8D A;  1U2Z A;  5DTM A;  3A9Z A;  1LLI A;  5DRY A;  4IVZ A;  2PUF A;  1LMB 3;  2HFZ A;  3S8Q A;  2XSD C;  4Y42 A;  1ZZ8 A;  4X4B A;  2IVG A;  1ZZ7 A;  1RZR A;  2J7U A;  4YAR A;  1ZUG A;  4EQZ A;  2PXK A;  3QOX A;  3ZKC A;  2KEI A;  2PPX A;  3G0T A;  2R1J L;  3B7H A;  2AW6 A;  1WH6 A;  3A9Y A;  1R63 A;  1SQ8 A;  3LQX A;  4HRA A;  3JXD L;  2CSF A;  4J1X A;  3F51 A;  3UWP A;  4Z5C A;  2PE5 A;  1UXC A;  1JFS A;  1X57 A;  2LYQ A;  4X4C A;  1QB2 A;  3EUS A;  2WIU B;  2KPJ A;  2J7W A;  2XI8 A;  4X4G A;  2H8R A;  4IA8 A;  4PU8 A;  3KZ3 A;  2PXU A;  1XWR A;  2B5A A;  1WIZ A;  2PUC A;  5DRT A;  4ER3 A;  4FBI A;  3BDN A;  5GAH i;  5JUW A;  2AXZ A;  2PXL A;  3VWS A;  1RZS A;  3A9X A;  3CLC A;  3FYM A;  3R1F A;  4PU4 C;  4WVL A;  2LLV A;  2FJR A;  3G5G A;  4Z5H A;  2GRM A;  3QOW A;  4ER6 A;  2CRO A;  3GBF A;  1RIO A;  4ER0 A;  2D5V A;  4EKG A;  3OQN A;  3D1N I;  1Y7Y A;  2VEO A;  1QPZ A;  3CEC A;  2AXU A;  1E3O C;  2XJ3 A;  4JCX A;  3TEL A;  3GUU A;  3OQO A;  3OMT A;  1POU A;  2LYL A;  3MLF A;  4GHJ A;  3HZI B;  2LCV A;  3BS3 A;  2IUO A;  3FMY A;  1PRV A;  3QWG A;  2XCJ A;  2PIJ A;  2ICP A;  1L1M A;  2YBD A;  2BNM A;  2BNO A;  2L1P A;  3GZD A;  3DNV B;  2PXV A;  4GQM A;  1LCD A;  2OR1 L;  3NRO A;  1QQB A;  3TEP A;  1ZVV A;  4OB4 A;  1QQA A;  2L49 A;  1UTX A;  1PRU A;  3LFP A;  4X4E A;  2OFY A;  1B0N A;  3ME5 A;  5A7L A;  3O9X A;  3H5T A;  2M4H A;  4X4H A;  1IC8 A;  1DWK A;  4Z5D A;  1QP4 A;  4MCT A;  4FN3 A;  2PUA A;  1Y9Q A;  2LYS A;  1S7E A;  2FFH A;  1ZAY A;  2JVL A;  2PXQ A;  3MEJ A;  1RPE L;  3SCF A;  2EWT A;  3JXC L;  2HSG A;  3OWQ A;  1GT0 C;  2LYK A;  4JCY A;  2ODR D;  2BJC A;  4EKI A;  2EBY A;  4Q2J A;  2XXP A;  3BD1 A;  1X2L A;  3SX0 A;  3DM5 A;  1HQ1 A;  2LYR A;  1NER A;  3F52 A;  2XIU A;  1MFQ C;  2IU7 A;  5GAG i;  2L8N A;  3FYA A;  4IWR A;  3IVP A;  2GZU A;  1PRA A;  3JXB C;  1AU7 A;  1O4X A;  5DTQ A;  1OCT C;  4JQD A;  2O4A A;  4J1W A;  3GZD C;  3QF3 A; 
#chains in the Genus database with same CATH homology
 2HCN A;  2MXD A;  2VEO A;  3A9Y A;  2HFZ A;  3MEJ A;  3R09 A;  3PE5 A;  4HRA A;  3VWS A;  2XXQ A;  2YBD A;  3A9X A;  4OBM A;  3UWP A;  5DSX A;  3OKZ A;  4WVL A;  2LLV A;  3TEL A;  3OWQ A;  2L1P A;  2HCS A;  3GUU A;  3GZD A;  3ME5 A;  1NW3 A;  2ODR D;  2J7U A;  4ER5 A;  4EKI A;  4EZI A;  3GZC A;  5DTR A;  2M4H A;  3QOW A;  4Q2J A;  5DT2 A;  3ZPX A;  4ER6 A;  4DE8 A;  2XXP A;  4EK9 A;  4EQZ A;  3QOX A;  2LLW A;  5DRT A;  3TFL A;  5DTQ A;  1U2Z A;  3SX0 A;  5DTM A;  3NXH A;  3SR4 A;  3M9L A;  4ER0 A;  4ER7 A;  3NRO A;  4EKG A;  3G0T A;  2LNM A;  3A9Z A;  4ER3 A;  3TEP A;  4DE9 A;  2J7W A;  3QFI A;  3NZL A;  5DRY A;  3GZD C;  5JUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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