3OKZA

Crystal structure of protein gbs0355 from streptococcus agalactiae, northeast structural genomics consortium target sar127
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
297
structure length
297
Chain Sequence
KSKSHAIEETKPFSILLMGVDTGSEHRKSKWSGNSDSMILVTINPKTNKTTMTSLERDVLIKLSGPKNNGQTGVEAKLNAAYASGGAEMALMTVQDLLDINVDYFMQINMQGLVDLVNAVGGITVTNKFDFPISIAANEPEYKAVVEPGTHKINGEQALVYSRMRYDDPEGDYGRQKRQREVIQKVLKKILALNSISSYKKILSAVSNNMQTNIEISSKTIPNLLAYKDSLEHIKSYQLKGEDATLSDGGSYQILTKKHLLAVQNRIKKELDKKRSKTLKTSAILYEDYYGLEHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target SaR127
rcsb
molecule tags Structural genomics, unknown function
source organism Streptococcus agalactiae
molecule keywords Putative uncharacterized protein gbs0355
total genus 81
structure length 297
sequence length 297
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3okzA00
3TFLA 2XXPA 3PE5A 3QFIA 3NROA 3MEJA 2XXQA 3NXHA 4DE8A 4OBMA 3OKZA 3OWQA 4DE9A 3TEPA 3TELA
chains in the Genus database with same CATH superfamily
2AXZA 5DT2A 2PXBA 1SQ8A 2PUCA 3KJXA 3NDBB 5A7LA 4IVZA 5DRYA 3RZZA 1QP7A 2PXLA 3OWQA 3FYAA 2PXFA 3LQXA 5DTQA 3DM5A 4GQMA 3LFPA 2LYSA 3U3WA 1UXCA 3M9LA 2IVQA 2KEIA 1JFSA 1QQBA 3UWPA 4DE9A 1ZZ7A 2CROA 1QP4A 3R09A 4ER3A 2LYKA 1MFQC 3DNVB 1ZZ9A 2PXKA 1PRVA 2XCJA 2LLVA 3S8QA 4YG4A 3CLCA 5K98B 1GT0C 1LLIA 3H5TA 1QPZA 1WH8A 4X4GA 3QQ6A 3GUUA 3NXHA 1LQCA 1ZZCA 3ZPXA 3OQMA 2XXQA 3SCGA 1R69A 2KZ8A 2AXUA 2LCVA 3O9XA 1XWRA 3FYMA 3L1PA 2BNOA 1NW3A 1PERL 1UTXA 1ADRA 1LCCA 2HCNA 2GZUA 2PXEA 3SX0A 1RZRA 1L1MA 3ZKCA 3UFDA 1JH9A 3SR4A 2R1JL 3B7HA 2HINA 2MXDA 1RZSA 4YARA 2CSFA 4NDWA 4ER7A 4Z5CA 3GZDC 2PUFA 2PUGA 4X4BA 1ZAYA 5JUWA 2XXAA 4PU7A 2OR1L 3EUSA 4IA8A 2GRLA 3QOXA 3IVPA 3QWGA 2LYQA 4PU8A 3OMTA 5GAGi 2V3CC 2PXUA 4PU3C 2PUDA 2L8NA 3A9XA 4IWRA 1NERA 3ZHMA 3A9ZA 3BD1A 3ME5A 1ZZ8A 4OB4A 2J7UA 4JCXA 2XSDC 3BDNA 2PXDA 3OKZA 3JXDL 4JCYA 2R63A 2BNMA 3TFLA 2ODRD 4MCXA 3ZHIA 1ZZ6A 2XI8A 1YSEA 1B0NA 4F8DA 1JWLA 2JCGA 3KL4A 4X4FA 3KZ3A 3BS3A 2HFZA 3VK0A 2H8RA 4ER5A 1ZVVA 2MEZA 1OCTC 2PE5A 2PPXA 4GHJA 4I6RA 2IVGA 1DULA 4ER0A 2LYJA 1ZS4A 4X4CA 2IU7A 3F52A 1LMB3 5GAHi 2GRMA 1EFAA 4Y42A 3SCFA 4Z5DA 1JFTA 4Z5HA 2L49A 3PE5A 4J1XA 4X4DA 2J7WA 1PRUA 2EWTA 2O49A 3CECA 1WIZA 3JXCL 2BNNA 2YBDA 4YG1A 2XJ3A 4I8TA 1HF0A 1R63A 3NROA 3SCHA 2PUAA 2PUBA 2PXVA 4EQZA 1POUA 2PUEA 3TELA 2VEOA 2XXPA 1OSLA 2HCSA 4Q2JA 1QP0A 1X2LA 1Y9QA 3G7DA 1BDIA 3D1NI 4EKIA 2ICPA 4MCTA 2D5VA 2EF8A 2OFYA 3VWSA 2AW6A 2AWIA 1CJGA 4DE8A 2LNMA 2M4HA 1ZPQA 2EBYA 3F6WA 1QB2A 2LYLA 2KEJA 2A6CA 1VPWA 3TRBA 3GZCA 1BDHA 4YBAA 4WVLA 4FN3A 4Z58A 1WH6A 5DTMA 4X4IA 1AU7A 3GZDA 2LYPA 1QQAA 3QYXA 5DRTA 3QOWA 1IC8A 4I6TA 1PRAA 3LISA 3OP9A 4FBIA 3PXPA 4EKGA 4O8BA 3G5GA 2WUSR 2AUWA 3OQOA 1ZUGA 1DWKA 3MEJA 1WETA 2KPJA 1E3OC 2WIUB 5DSXA 4X4HA 1PNRA 2AXVA 2FFHA 2B5AA 3CROL 2PXQA 4JQDA 3A9YA 4OBMA 3G0TA 2IVBA 2L1PA 2XIUA 2PXTA 2LLWA 3QFIA 3FMYA 4X4EA 2PXPA 1LCDA 4J1WA 2O4AA 3MLFA 3OQNA 2LYRA 1RIOA 3HZIB 1ZZBA 1DW9A 3JXBC 4YG7B 2IV1A 1RZRD 3QF3A 2MQKA 2PIJA 3GN5B 3R1FA 1HQ1A 3TEPA 4ER6A 2O38A 4PU4C 1O4XA 1QZXA 1X57A 2JQEA 1UXDA 1RPEL 3KXAA 2JVLA 4Z59A 4HRAA 1Y7YA 2IUOA 3GBFA 5DTRA 1S7EA 3F51A 3GN5A 2BJCA 2FJRA 2HSGA 2ICTA 1U2ZA 2KEKA 1CQTA 4EZIA 1NEQA 3NZLA 4I6UA 4EK9A
chains in the Genus database with same CATH topology
2VEOA 3M9LA 3A9ZA 5DRTA 2ODRD 2XXPA 3TFLA 3QOWA 5DSXA 5DT2A 3QOXA 2J7WA 2HCSA 3ME5A 4Q2JA 3UWPA 4HRAA 4DE9A 4ER0A 3SR4A 4EKGA 5DTRA 4EKIA 3R09A 4ER3A 4EK9A 2YBDA 3GZCA 5DRYA 3GUUA 2J7UA 2MXDA 3NROA 1NW3A 3NXHA 4WVLA 1U2ZA 3A9YA 4OBMA 3VWSA 3G0TA 3OWQA 2HFZA 4ER7A 3ZPXA 2L1PA 3TEPA 4ER6A 3GZDC 5DTMA 4EQZA 4ER5A 4EZIA 5DTQA 3A9XA 2LLVA 2LLWA 3PE5A 3QFIA 2HCNA 2XXQA 3MEJA 4DE8A 3GZDA 3NZLA 3OKZA 5JUWA 3SX0A 2LNMA 2M4HA 3TELA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TFL A;  2XXP A;  3PE5 A;  3QFI A;  3NRO A;  3MEJ A;  2XXQ A;  3NXH A;  4DE8 A;  4OBM A;  3OKZ A;  3OWQ A;  4DE9 A;  3TEP A;  3TEL A; 
#chains in the Genus database with same CATH topology
 2AXZ A;  5DT2 A;  2PXB A;  1SQ8 A;  2PUC A;  3KJX A;  3NDB B;  5A7L A;  4IVZ A;  5DRY A;  3RZZ A;  1QP7 A;  2PXL A;  3OWQ A;  3FYA A;  2PXF A;  3LQX A;  5DTQ A;  3DM5 A;  4GQM A;  3LFP A;  2LYS A;  3U3W A;  1UXC A;  3M9L A;  2IVQ A;  2KEI A;  1JFS A;  1QQB A;  3UWP A;  4DE9 A;  1ZZ7 A;  2CRO A;  1QP4 A;  3R09 A;  4ER3 A;  2LYK A;  1MFQ C;  3DNV B;  1ZZ9 A;  2PXK A;  1PRV A;  2XCJ A;  2LLV A;  3S8Q A;  4YG4 A;  3CLC A;  5K98 B;  1GT0 C;  1LLI A;  3H5T A;  1QPZ A;  1WH8 A;  4X4G A;  3QQ6 A;  3GUU A;  3NXH A;  1LQC A;  1ZZC A;  3ZPX A;  3OQM A;  2XXQ A;  3SCG A;  1R69 A;  2KZ8 A;  2AXU A;  2LCV A;  3O9X A;  1XWR A;  3FYM A;  3L1P A;  2BNO A;  1NW3 A;  1PER L;  1UTX A;  1ADR A;  1LCC A;  2HCN A;  2GZU A;  2PXE A;  3SX0 A;  1RZR A;  1L1M A;  3ZKC A;  3UFD A;  1JH9 A;  3SR4 A;  2R1J L;  3B7H A;  2HIN A;  2MXD A;  1RZS A;  4YAR A;  2CSF A;  4NDW A;  4ER7 A;  4Z5C A;  3GZD C;  2PUF A;  2PUG A;  4X4B A;  1ZAY A;  5JUW A;  2XXA A;  4PU7 A;  2OR1 L;  3EUS A;  4IA8 A;  2GRL A;  3QOX A;  3IVP A;  3QWG A;  2LYQ A;  4PU8 A;  3OMT A;  5GAG i;  2V3C C;  2PXU A;  4PU3 C;  2PUD A;  2L8N A;  3A9X A;  4IWR A;  1NER A;  3ZHM A;  3A9Z A;  3BD1 A;  3ME5 A;  1ZZ8 A;  4OB4 A;  2J7U A;  4JCX A;  2XSD C;  3BDN A;  2PXD A;  3OKZ A;  3JXD L;  4JCY A;  2R63 A;  2BNM A;  3TFL A;  2ODR D;  4MCX A;  3ZHI A;  1ZZ6 A;  2XI8 A;  1YSE A;  1B0N A;  4F8D A;  1JWL A;  2JCG A;  3KL4 A;  4X4F A;  3KZ3 A;  3BS3 A;  2HFZ A;  3VK0 A;  2H8R A;  4ER5 A;  1ZVV A;  2MEZ A;  1OCT C;  2PE5 A;  2PPX A;  4GHJ A;  4I6R A;  2IVG A;  1DUL A;  4ER0 A;  2LYJ A;  1ZS4 A;  4X4C A;  2IU7 A;  3F52 A;  1LMB 3;  5GAH i;  2GRM A;  1EFA A;  4Y42 A;  3SCF A;  4Z5D A;  1JFT A;  4Z5H A;  2L49 A;  3PE5 A;  4J1X A;  4X4D A;  2J7W A;  1PRU A;  2EWT A;  2O49 A;  3CEC A;  1WIZ A;  3JXC L;  2BNN A;  2YBD A;  4YG1 A;  2XJ3 A;  4I8T A;  1HF0 A;  1R63 A;  3NRO A;  3SCH A;  2PUA A;  2PUB A;  2PXV A;  4EQZ A;  1POU A;  2PUE A;  3TEL A;  2VEO A;  2XXP A;  1OSL A;  2HCS A;  4Q2J A;  1QP0 A;  1X2L A;  1Y9Q A;  3G7D A;  1BDI A;  3D1N I;  4EKI A;  2ICP A;  4MCT A;  2D5V A;  2EF8 A;  2OFY A;  3VWS A;  2AW6 A;  2AWI A;  1CJG A;  4DE8 A;  2LNM A;  2M4H A;  1ZPQ A;  2EBY A;  3F6W A;  1QB2 A;  2LYL A;  2KEJ A;  2A6C A;  1VPW A;  3TRB A;  3GZC A;  1BDH A;  4YBA A;  4WVL A;  4FN3 A;  4Z58 A;  1WH6 A;  5DTM A;  4X4I A;  1AU7 A;  3GZD A;  2LYP A;  1QQA A;  3QYX A;  5DRT A;  3QOW A;  1IC8 A;  4I6T A;  1PRA A;  3LIS A;  3OP9 A;  4FBI A;  3PXP A;  4EKG A;  4O8B A;  3G5G A;  2WUS R;  2AUW A;  3OQO A;  1ZUG A;  1DWK A;  3MEJ A;  1WET A;  2KPJ A;  1E3O C;  2WIU B;  5DSX A;  4X4H A;  1PNR A;  2AXV A;  2FFH A;  2B5A A;  3CRO L;  2PXQ A;  4JQD A;  3A9Y A;  4OBM A;  3G0T A;  2IVB A;  2L1P A;  2XIU A;  2PXT A;  2LLW A;  3QFI A;  3FMY A;  4X4E A;  2PXP A;  1LCD A;  4J1W A;  2O4A A;  3MLF A;  3OQN A;  2LYR A;  1RIO A;  3HZI B;  1ZZB A;  1DW9 A;  3JXB C;  4YG7 B;  2IV1 A;  1RZR D;  3QF3 A;  2MQK A;  2PIJ A;  3GN5 B;  3R1F A;  1HQ1 A;  3TEP A;  4ER6 A;  2O38 A;  4PU4 C;  1O4X A;  1QZX A;  1X57 A;  2JQE A;  1UXD A;  1RPE L;  3KXA A;  2JVL A;  4Z59 A;  4HRA A;  1Y7Y A;  2IUO A;  3GBF A;  5DTR A;  1S7E A;  3F51 A;  3GN5 A;  2BJC A;  2FJR A;  2HSG A;  2ICT A;  1U2Z A;  2KEK A;  1CQT A;  4EZI A;  1NEQ A;  3NZL A;  4I6U A;  4EK9 A; 
#chains in the Genus database with same CATH homology
 2VEO A;  3M9L A;  3A9Z A;  5DRT A;  2ODR D;  2XXP A;  3TFL A;  3QOW A;  5DSX A;  5DT2 A;  3QOX A;  2J7W A;  2HCS A;  3ME5 A;  4Q2J A;  3UWP A;  4HRA A;  4DE9 A;  4ER0 A;  3SR4 A;  4EKG A;  5DTR A;  4EKI A;  3R09 A;  4ER3 A;  4EK9 A;  2YBD A;  3GZC A;  5DRY A;  3GUU A;  2J7U A;  2MXD A;  3NRO A;  1NW3 A;  3NXH A;  4WVL A;  1U2Z A;  3A9Y A;  4OBM A;  3VWS A;  3G0T A;  3OWQ A;  2HFZ A;  4ER7 A;  3ZPX A;  2L1P A;  3TEP A;  4ER6 A;  3GZD C;  5DTM A;  4EQZ A;  4ER5 A;  4EZI A;  5DTQ A;  3A9X A;  2LLV A;  2LLW A;  3PE5 A;  3QFI A;  2HCN A;  2XXQ A;  3MEJ A;  4DE8 A;  3GZD A;  3NZL A;  3OKZ A;  5JUW A;  3SX0 A;  2LNM A;  2M4H A;  3TEL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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