3OWQA

X-ray structure of lin1025 protein from listeria innocua, northeast structural genomics consortium target lkr164
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
251
structure length
237
Chain Sequence
KKPFSVLLMGSDNGRADTIILATANKQQNAVEMVSIPRDTKVDYGNDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTDALQYVRIRHEDPRGDFGRQDRQRDVIIGIANKVISESIMKAVGDNFQTNMTLTDITSMATNYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFAPDETDLERVINMFKKSLDIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target LkR164
rcsb
molecule tags Structural genomics, unknown function
source organism Listeria innocua
molecule keywords Lin1025 protein
total genus 60
structure length 237
sequence length 251
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3owqA00
3QFIA 3TEPA 2XXPA 3OWQA 2XXQA 4OBMA 3NXHA 3PE5A 3TELA 3TFLA 3MEJA 4DE8A 4DE9A 3OKZA 3NROA
chains in the Genus database with same CATH superfamily
3KZ3A 3VWSA 2JVLA 5DT2A 4YG7B 3MLFA 3GBFA 1JWLA 1NW3A 3D1NI 3LQXA 2LLVA 4WVLA 2PXDA 4JCYA 3HZIB 2JCGA 3NZLA 2LYLA 4Z5DA 1ZUGA 4ER6A 2M4HA 4OBMA 2FJRA 4GQMA 4Y42A 3FYAA 1QP7A 2MXDA 2PXUA 2LCVA 2AWIA 3CROL 4EZIA 3A9YA 4J1WA 4ER0A 1R69A 1LMB3 3OWQA 2GRLA 4Q2JA 1POUA 3ZKCA 2V3CC 2L1PA 1CJGA 2ICPA 4FN3A 2LYPA 4X4BA 1VPWA 3RZZA 2KEJA 4O8BA 4J1XA 1S7EA 3QWGA 1IC8A 4JCXA 3NDBB 4F8DA 2IVGA 2OFYA 3L1PA 3BD1A 3KJXA 1QPZA 2L8NA 3R09A 2LYRA 2KEKA 3F6WA 1QP0A 3GN5A 1CQTA 1Y7YA 2MQKA 1BDHA 3DM5A 1PRVA 3OQMA 2LNMA 2CSFA 2MEZA 3BDNA 2R1JL 2HCSA 1MFQC 4EKIA 2O38A 4I8TA 3QOWA 1X57A 1QB2A 3IVPA 1ZS4A 3NROA 2LLWA 2LYKA 4HRAA 1PRAA 3GUUA 1OCTC 3OP9A 5DRYA 1X2LA 3G0TA 4X4DA 3S8QA 2KZ8A 3SX0A 3MEJA 4X4FA 1PNRA 2XI8A 2PXFA 1WIZA 3M9LA 3R1FA 2EWTA 1HQ1A 2IV1A 1UTXA 2EF8A 3QQ6A 2IVBA 2B5AA 4I6RA 1ZAYA 2JQEA 1O4XA 2XIUA 3U3WA 2AXVA 3VK0A 4DE9A 5GAHi 2PXEA 1R63A 2PUEA 4MCXA 1DWKA 3CECA 1BDIA 2PUBA 2AXZA 2PXTA 4ER5A 3ZHMA 3NXHA 3F51A 1LLIA 2PXBA 4Z59A 1JH9A 1RZSA 3TRBA 5K98B 1WH6A 1NERA 1LQCA 2PXKA 3A9XA 3A9ZA 3CLCA 2XCJA 1LCDA 3UWPA 3B7HA 3GN5B 4X4GA 3SCHA 2J7UA 2A6CA 3G5GA 4YG4A 1ZPQA 1AU7A 2BNNA 2PIJA 5GAGi 1ZZ7A 1QP4A 2PUAA 1WH8A 3QFIA 2PXPA 2XXPA 2J7WA 4X4IA 1RZRD 3TFLA 2LYQA 3GZDA 4PU4C 1ZVVA 1PRUA 1QZXA 4NDWA 2AW6A 2ODRD 1UXDA 3DNVB 2FFHA 3OQOA 3SCFA 1U2ZA 5DRTA 2VEOA 2LYSA 2PUDA 2BNOA 1Y9QA 4JQDA 1EFAA 3TELA 2PXLA 3ME5A 3SR4A 2PXVA 4YARA 2PUFA 3KXAA 2KPJA 2LYJA 3OMTA 1E3OC 4GHJA 1DW9A 3JXDL 5JUWA 2GZUA 2IUOA 4IWRA 1ZZ8A 4I6TA 1UXCA 1HF0A 1JFSA 4IVZA 4YBAA 3FMYA 4Z58A 3F52A 3PE5A 3QYXA 3JXBC 2BJCA 3QOXA 2EBYA 1WETA 3FYMA 3QF3A 4EQZA 4EK9A 4DE8A 3LFPA 2HSGA 2CROA 4ER7A 1ADRA 3G7DA 3KL4A 3PXPA 2PUCA 4I6UA 3EUSA 5DTQA 4IA8A 1ZZ9A 3O9XA 2IVQA 2YBDA 4MCTA 1RZRA 1NEQA 4YG1A 1B0NA 3BS3A 5A7LA 4OB4A 4PU7A 4EKGA 5DTRA 3H5TA 3LISA 2PXQA 2WUSR 2HCNA 3JXCL 5DTMA 3UFDA 4PU8A 2XSDC 3OKZA 1GT0C 3GZDC 3TEPA 4FBIA 2XJ3A 3OQNA 2HINA 1YSEA 1RPEL 2AUWA 4X4CA 2ICTA 4ER3A 2R63A 1DULA 3SCGA 2WIUB 2BNMA 1QQAA 2O49A 1SQ8A 4Z5CA 1QQBA 3ZPXA 2OR1L 1ZZ6A 5DSXA 1LCCA 1OSLA 2PPXA 2L49A 2PUGA 2AXUA 1JFTA 2HFZA 4PU3C 1ZZCA 1PERL 2PE5A 3GZCA 1RIOA 2IU7A 1ZZBA 4Z5HA 2XXQA 2KEIA 4X4EA 4X4HA 2O4AA 2H8RA 2XXAA 3ZHIA 1XWRA 2D5VA 2GRMA 1L1MA
chains in the Genus database with same CATH topology
2L1PA 4HRAA 5DTRA 4ER7A 5JUWA 3VWSA 2M4HA 4OBMA 3R09A 3TELA 3GUUA 3ZPXA 3ME5A 3A9XA 2HCNA 5DT2A 3A9ZA 3QFIA 5DRYA 2XXPA 3SR4A 5DSXA 2J7WA 3G0TA 2MXDA 3TFLA 3UWPA 1NW3A 2LNMA 5DTMA 3GZDA 5DTQA 2XXQA 4ER5A 2LLVA 2J7UA 4ER3A 2HCSA 2HFZA 3NXHA 3PE5A 3SX0A 4WVLA 4EZIA 3A9YA 3MEJA 4DE9A 3OKZA 4ER0A 3QOXA 2ODRD 3GZDC 3TEPA 2YBDA 3GZCA 3OWQA 3NZLA 4EKIA 4Q2JA 4EQZA 4EK9A 3QOWA 1U2ZA 4DE8A 3M9LA 5DRTA 2VEOA 2LLWA 3NROA 4ER6A 4EKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QFI A;  3TEP A;  2XXP A;  3OWQ A;  2XXQ A;  4OBM A;  3NXH A;  3PE5 A;  3TEL A;  3TFL A;  3MEJ A;  4DE8 A;  4DE9 A;  3OKZ A;  3NRO A; 
#chains in the Genus database with same CATH topology
 3KZ3 A;  3VWS A;  2JVL A;  5DT2 A;  4YG7 B;  3MLF A;  3GBF A;  1JWL A;  1NW3 A;  3D1N I;  3LQX A;  2LLV A;  4WVL A;  2PXD A;  4JCY A;  3HZI B;  2JCG A;  3NZL A;  2LYL A;  4Z5D A;  1ZUG A;  4ER6 A;  2M4H A;  4OBM A;  2FJR A;  4GQM A;  4Y42 A;  3FYA A;  1QP7 A;  2MXD A;  2PXU A;  2LCV A;  2AWI A;  3CRO L;  4EZI A;  3A9Y A;  4J1W A;  4ER0 A;  1R69 A;  1LMB 3;  3OWQ A;  2GRL A;  4Q2J A;  1POU A;  3ZKC A;  2V3C C;  2L1P A;  1CJG A;  2ICP A;  4FN3 A;  2LYP A;  4X4B A;  1VPW A;  3RZZ A;  2KEJ A;  4O8B A;  4J1X A;  1S7E A;  3QWG A;  1IC8 A;  4JCX A;  3NDB B;  4F8D A;  2IVG A;  2OFY A;  3L1P A;  3BD1 A;  3KJX A;  1QPZ A;  2L8N A;  3R09 A;  2LYR A;  2KEK A;  3F6W A;  1QP0 A;  3GN5 A;  1CQT A;  1Y7Y A;  2MQK A;  1BDH A;  3DM5 A;  1PRV A;  3OQM A;  2LNM A;  2CSF A;  2MEZ A;  3BDN A;  2R1J L;  2HCS A;  1MFQ C;  4EKI A;  2O38 A;  4I8T A;  3QOW A;  1X57 A;  1QB2 A;  3IVP A;  1ZS4 A;  3NRO A;  2LLW A;  2LYK A;  4HRA A;  1PRA A;  3GUU A;  1OCT C;  3OP9 A;  5DRY A;  1X2L A;  3G0T A;  4X4D A;  3S8Q A;  2KZ8 A;  3SX0 A;  3MEJ A;  4X4F A;  1PNR A;  2XI8 A;  2PXF A;  1WIZ A;  3M9L A;  3R1F A;  2EWT A;  1HQ1 A;  2IV1 A;  1UTX A;  2EF8 A;  3QQ6 A;  2IVB A;  2B5A A;  4I6R A;  1ZAY A;  2JQE A;  1O4X A;  2XIU A;  3U3W A;  2AXV A;  3VK0 A;  4DE9 A;  5GAH i;  2PXE A;  1R63 A;  2PUE A;  4MCX A;  1DWK A;  3CEC A;  1BDI A;  2PUB A;  2AXZ A;  2PXT A;  4ER5 A;  3ZHM A;  3NXH A;  3F51 A;  1LLI A;  2PXB A;  4Z59 A;  1JH9 A;  1RZS A;  3TRB A;  5K98 B;  1WH6 A;  1NER A;  1LQC A;  2PXK A;  3A9X A;  3A9Z A;  3CLC A;  2XCJ A;  1LCD A;  3UWP A;  3B7H A;  3GN5 B;  4X4G A;  3SCH A;  2J7U A;  2A6C A;  3G5G A;  4YG4 A;  1ZPQ A;  1AU7 A;  2BNN A;  2PIJ A;  5GAG i;  1ZZ7 A;  1QP4 A;  2PUA A;  1WH8 A;  3QFI A;  2PXP A;  2XXP A;  2J7W A;  4X4I A;  1RZR D;  3TFL A;  2LYQ A;  3GZD A;  4PU4 C;  1ZVV A;  1PRU A;  1QZX A;  4NDW A;  2AW6 A;  2ODR D;  1UXD A;  3DNV B;  2FFH A;  3OQO A;  3SCF A;  1U2Z A;  5DRT A;  2VEO A;  2LYS A;  2PUD A;  2BNO A;  1Y9Q A;  4JQD A;  1EFA A;  3TEL A;  2PXL A;  3ME5 A;  3SR4 A;  2PXV A;  4YAR A;  2PUF A;  3KXA A;  2KPJ A;  2LYJ A;  3OMT A;  1E3O C;  4GHJ A;  1DW9 A;  3JXD L;  5JUW A;  2GZU A;  2IUO A;  4IWR A;  1ZZ8 A;  4I6T A;  1UXC A;  1HF0 A;  1JFS A;  4IVZ A;  4YBA A;  3FMY A;  4Z58 A;  3F52 A;  3PE5 A;  3QYX A;  3JXB C;  2BJC A;  3QOX A;  2EBY A;  1WET A;  3FYM A;  3QF3 A;  4EQZ A;  4EK9 A;  4DE8 A;  3LFP A;  2HSG A;  2CRO A;  4ER7 A;  1ADR A;  3G7D A;  3KL4 A;  3PXP A;  2PUC A;  4I6U A;  3EUS A;  5DTQ A;  4IA8 A;  1ZZ9 A;  3O9X A;  2IVQ A;  2YBD A;  4MCT A;  1RZR A;  1NEQ A;  4YG1 A;  1B0N A;  3BS3 A;  5A7L A;  4OB4 A;  4PU7 A;  4EKG A;  5DTR A;  3H5T A;  3LIS A;  2PXQ A;  2WUS R;  2HCN A;  3JXC L;  5DTM A;  3UFD A;  4PU8 A;  2XSD C;  3OKZ A;  1GT0 C;  3GZD C;  3TEP A;  4FBI A;  2XJ3 A;  3OQN A;  2HIN A;  1YSE A;  1RPE L;  2AUW A;  4X4C A;  2ICT A;  4ER3 A;  2R63 A;  1DUL A;  3SCG A;  2WIU B;  2BNM A;  1QQA A;  2O49 A;  1SQ8 A;  4Z5C A;  1QQB A;  3ZPX A;  2OR1 L;  1ZZ6 A;  5DSX A;  1LCC A;  1OSL A;  2PPX A;  2L49 A;  2PUG A;  2AXU A;  1JFT A;  2HFZ A;  4PU3 C;  1ZZC A;  1PER L;  2PE5 A;  3GZC A;  1RIO A;  2IU7 A;  1ZZB A;  4Z5H A;  2XXQ A;  2KEI A;  4X4E A;  4X4H A;  2O4A A;  2H8R A;  2XXA A;  3ZHI A;  1XWR A;  2D5V A;  2GRM A;  1L1M A; 
#chains in the Genus database with same CATH homology
 2L1P A;  4HRA A;  5DTR A;  4ER7 A;  5JUW A;  3VWS A;  2M4H A;  4OBM A;  3R09 A;  3TEL A;  3GUU A;  3ZPX A;  3ME5 A;  3A9X A;  2HCN A;  5DT2 A;  3A9Z A;  3QFI A;  5DRY A;  2XXP A;  3SR4 A;  5DSX A;  2J7W A;  3G0T A;  2MXD A;  3TFL A;  3UWP A;  1NW3 A;  2LNM A;  5DTM A;  3GZD A;  5DTQ A;  2XXQ A;  4ER5 A;  2LLV A;  2J7U A;  4ER3 A;  2HCS A;  2HFZ A;  3NXH A;  3PE5 A;  3SX0 A;  4WVL A;  4EZI A;  3A9Y A;  3MEJ A;  4DE9 A;  3OKZ A;  4ER0 A;  3QOX A;  2ODR D;  3GZD C;  3TEP A;  2YBD A;  3GZC A;  3OWQ A;  3NZL A;  4EKI A;  4Q2J A;  4EQZ A;  4EK9 A;  3QOW A;  1U2Z A;  4DE8 A;  3M9L A;  5DRT A;  2VEO A;  2LLW A;  3NRO A;  4ER6 A;  4EKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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