3OWQA

X-ray structure of lin1025 protein from listeria innocua, northeast structural genomics consortium target lkr164
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
251
structure length
237
Chain Sequence
KKPFSVLLMGSDNGRADTIILATANKQQNAVEMVSIPRDTKVDYGNDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTDALQYVRIRHEDPRGDFGRQDRQRDVIIGIANKVISESIMKAVGDNFQTNMTLTDITSMATNYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFAPDETDLERVINMFKKSLDIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target LkR164
rcsb
molecule tags Structural genomics, unknown function
source organism Listeria innocua
molecule keywords Lin1025 protein
total genus 60
structure length 237
sequence length 251
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3owqA00
3MEJA 3NROA 3NXHA 3PE5A 2XXQA 2XXPA 3OWQA 3OKZA 4OBMA 4DE9A 3QFIA 3TFLA 3TEPA 3TELA 4DE8A
chains in the Genus database with same CATH superfamily
3ZHIA 2O38A 4YG4A 2KPJA 2PXVA 3JXBC 4JQDA 1ZZBA 1ZZCA 3QWGA 2HINA 4HRAA 2IV1A 2LYLA 1RZRA 1PRVA 5DSXA 4FBIA 2MQKA 1WIZA 2JCGA 2AW6A 4J1WA 1RIOA 3TEPA 1WH6A 3LFPA 4GHJA 1VPWA 1SQ8A 3FYMA 4Z5CA 3OP9A 2PUEA 1HQ1A 2FFHA 2L49A 2XXAA 4F8DA 2LLVA 3VK0A 2GRMA 2EF8A 2LCVA 2PUDA 3QF3A 3NROA 2KEKA 4I8TA 1PERL 1PRAA 3F6WA 3KXAA 4Z5HA 1MFQC 2AUWA 3U3WA 1R69A 3L1PA 1NEQA 5GAHi 4PU4C 2VEOA 2IU7A 2J7WA 1O4XA 2LYJA 2D5VA 3A9ZA 2WUSR 4PU8A 1ZZ9A 1JFTA 1ZZ8A 3FMYA 3FYAA 2PXLA 1ZZ6A 3R1FA 5DTQA 4X4DA 4J1XA 1ZZ7A 3GN5B 2PXBA 2PUGA 2CROA 2LYKA 3F52A 3ZHMA 1RPEL 1DWKA 1ZPQA 2XXPA 3QOWA 4ER5A 3CROL 3VWSA 4MCXA 3OQMA 2AWIA 2R1JL 3PE5A 3SCHA 1RZSA 4ER7A 2XIUA 3D1NI 1LCCA 2KEJA 3LISA 4PU7A 1WH8A 3A9YA 1Y7YA 3G0TA 2L8NA 2PXQA 1ZUGA 3JXCL 3OKZA 2LLWA 2PXPA 5K98B 1HF0A 4PU3C 2R63A 4X4IA 3SCFA 3GBFA 2EBYA 2H8RA 1LMB3 3MEJA 1BDHA 2BJCA 1QZXA 4I6RA 5DTMA 3F51A 4X4GA 3DM5A 4ER0A 5DT2A 2HFZA 3CECA 4Z59A 2HCSA 1QP4A 2FJRA 4NDWA 1ZAYA 4WVLA 2KEIA 1NW3A 2JQEA 3MLFA 3G7DA 1GT0C 4EK9A 3ME5A 4YG1A 2PXFA 2LYRA 3OMTA 3CLCA 1QQBA 2YBDA 2PPXA 5A7LA 2PUAA 4I6UA 3ZPXA 3B7HA 2PXTA 1YSEA 1CQTA 2ICPA 4ER6A 4X4FA 2O4AA 2OFYA 3EUSA 1ZS4A 3BD1A 2HCNA 3SX0A 1OCTC 1WETA 3NXHA 2PXEA 4FN3A 2AXVA 4X4EA 4EKIA 4JCXA 2XI8A 2L1PA 3SCGA 3GZDC 2XJ3A 2HSGA 4YBAA 2ICTA 1B0NA 3O9XA 2BNNA 3KZ3A 5DTRA 4YARA 2BNOA 1JWLA 3BS3A 3GZCA 1JH9A 1S7EA 1OSLA 1CJGA 2GZUA 4I6TA 1JFSA 1UXDA 2OR1L 4JCYA 3H5TA 1EFAA 2PIJA 2PXKA 1E3OC 2GRLA 3M9LA 3ZKCA 4X4CA 1R63A 4DE8A 4Z5DA 2PXUA 4EZIA 2CSFA 1X57A 4YG7B 2XSDC 2V3CC 2BNMA 3QOXA 1DULA 1QPZA 2LNMA 5DRYA 4IA8A 2MEZA 1U2ZA 4OB4A 3UWPA 2LYQA 1PRUA 4MCTA 1ZVVA 3NZLA 2AXZA 2EWTA 2PXDA 2KZ8A 3PXPA 2WIUB 3GZDA 2PUBA 4EQZA 3UFDA 4Y42A 3KL4A 3OWQA 5DRTA 3A9XA 4O8BA 1X2LA 1DW9A 5JUWA 5GAGi 4X4BA 4Q2JA 2O49A 3TRBA 2PUFA 3QFIA 4GQMA 2AXUA 1UXCA 4X4HA 2MXDA 1AU7A 3HZIB 4ER3A 1LQCA 1PNRA 1ADRA 1BDIA 1L1MA 2LYPA 3TELA 4IVZA 2B5AA 2M4HA 3JXDL 2XCJA 1QP0A 1Y9QA 1RZRD 2IVBA 3QYXA 1POUA 3IVPA 4EKGA 3BDNA 3GN5A 2IVGA 3OQNA 2PE5A 1XWRA 1QQAA 1UTXA 2J7UA 3RZZA 3DNVB 3R09A 1QP7A 2JVLA 3OQOA 2A6CA 1NERA 1LCDA 3QQ6A 3NDBB 2ODRD 2IVQA 3LQXA 1IC8A 2XXQA 3GUUA 4Z58A 4IWRA 3G5GA 4OBMA 3SR4A 3KJXA 2IUOA 2LYSA 3S8QA 3TFLA 4DE9A 1QB2A 2PUCA 1LLIA
chains in the Genus database with same CATH topology
1U2ZA 1NW3A 2J7UA 2LLVA 3PE5A 5JUWA 2VEOA 3UWPA 4ER6A 4EKIA 4EK9A 2J7WA 3TELA 3R09A 4Q2JA 3ME5A 4ER7A 2M4HA 4DE8A 2L1PA 3MEJA 3NROA 3A9ZA 3A9YA 4EZIA 3TEPA 3QFIA 3G0TA 5DTMA 3GZDC 3NZLA 2ODRD 4ER0A 5DT2A 5DTQA 2HCNA 2YBDA 2XXQA 2XXPA 3GUUA 3QOXA 3SX0A 3OKZA 3GZDA 4OBMA 3SR4A 4EQZA 4HRAA 4EKGA 3QOWA 2LNMA 2MXDA 2HFZA 3ZPXA 5DRYA 3NXHA 4ER3A 3M9LA 5DSXA 4ER5A 3OWQA 2LLWA 5DTRA 3VWSA 2HCSA 3TFLA 4DE9A 5DRTA 4WVLA 3A9XA 3GZCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MEJ A;  3NRO A;  3NXH A;  3PE5 A;  2XXQ A;  2XXP A;  3OWQ A;  3OKZ A;  4OBM A;  4DE9 A;  3QFI A;  3TFL A;  3TEP A;  3TEL A;  4DE8 A; 
#chains in the Genus database with same CATH topology
 3ZHI A;  2O38 A;  4YG4 A;  2KPJ A;  2PXV A;  3JXB C;  4JQD A;  1ZZB A;  1ZZC A;  3QWG A;  2HIN A;  4HRA A;  2IV1 A;  2LYL A;  1RZR A;  1PRV A;  5DSX A;  4FBI A;  2MQK A;  1WIZ A;  2JCG A;  2AW6 A;  4J1W A;  1RIO A;  3TEP A;  1WH6 A;  3LFP A;  4GHJ A;  1VPW A;  1SQ8 A;  3FYM A;  4Z5C A;  3OP9 A;  2PUE A;  1HQ1 A;  2FFH A;  2L49 A;  2XXA A;  4F8D A;  2LLV A;  3VK0 A;  2GRM A;  2EF8 A;  2LCV A;  2PUD A;  3QF3 A;  3NRO A;  2KEK A;  4I8T A;  1PER L;  1PRA A;  3F6W A;  3KXA A;  4Z5H A;  1MFQ C;  2AUW A;  3U3W A;  1R69 A;  3L1P A;  1NEQ A;  5GAH i;  4PU4 C;  2VEO A;  2IU7 A;  2J7W A;  1O4X A;  2LYJ A;  2D5V A;  3A9Z A;  2WUS R;  4PU8 A;  1ZZ9 A;  1JFT A;  1ZZ8 A;  3FMY A;  3FYA A;  2PXL A;  1ZZ6 A;  3R1F A;  5DTQ A;  4X4D A;  4J1X A;  1ZZ7 A;  3GN5 B;  2PXB A;  2PUG A;  2CRO A;  2LYK A;  3F52 A;  3ZHM A;  1RPE L;  1DWK A;  1ZPQ A;  2XXP A;  3QOW A;  4ER5 A;  3CRO L;  3VWS A;  4MCX A;  3OQM A;  2AWI A;  2R1J L;  3PE5 A;  3SCH A;  1RZS A;  4ER7 A;  2XIU A;  3D1N I;  1LCC A;  2KEJ A;  3LIS A;  4PU7 A;  1WH8 A;  3A9Y A;  1Y7Y A;  3G0T A;  2L8N A;  2PXQ A;  1ZUG A;  3JXC L;  3OKZ A;  2LLW A;  2PXP A;  5K98 B;  1HF0 A;  4PU3 C;  2R63 A;  4X4I A;  3SCF A;  3GBF A;  2EBY A;  2H8R A;  1LMB 3;  3MEJ A;  1BDH A;  2BJC A;  1QZX A;  4I6R A;  5DTM A;  3F51 A;  4X4G A;  3DM5 A;  4ER0 A;  5DT2 A;  2HFZ A;  3CEC A;  4Z59 A;  2HCS A;  1QP4 A;  2FJR A;  4NDW A;  1ZAY A;  4WVL A;  2KEI A;  1NW3 A;  2JQE A;  3MLF A;  3G7D A;  1GT0 C;  4EK9 A;  3ME5 A;  4YG1 A;  2PXF A;  2LYR A;  3OMT A;  3CLC A;  1QQB A;  2YBD A;  2PPX A;  5A7L A;  2PUA A;  4I6U A;  3ZPX A;  3B7H A;  2PXT A;  1YSE A;  1CQT A;  2ICP A;  4ER6 A;  4X4F A;  2O4A A;  2OFY A;  3EUS A;  1ZS4 A;  3BD1 A;  2HCN A;  3SX0 A;  1OCT C;  1WET A;  3NXH A;  2PXE A;  4FN3 A;  2AXV A;  4X4E A;  4EKI A;  4JCX A;  2XI8 A;  2L1P A;  3SCG A;  3GZD C;  2XJ3 A;  2HSG A;  4YBA A;  2ICT A;  1B0N A;  3O9X A;  2BNN A;  3KZ3 A;  5DTR A;  4YAR A;  2BNO A;  1JWL A;  3BS3 A;  3GZC A;  1JH9 A;  1S7E A;  1OSL A;  1CJG A;  2GZU A;  4I6T A;  1JFS A;  1UXD A;  2OR1 L;  4JCY A;  3H5T A;  1EFA A;  2PIJ A;  2PXK A;  1E3O C;  2GRL A;  3M9L A;  3ZKC A;  4X4C A;  1R63 A;  4DE8 A;  4Z5D A;  2PXU A;  4EZI A;  2CSF A;  1X57 A;  4YG7 B;  2XSD C;  2V3C C;  2BNM A;  3QOX A;  1DUL A;  1QPZ A;  2LNM A;  5DRY A;  4IA8 A;  2MEZ A;  1U2Z A;  4OB4 A;  3UWP A;  2LYQ A;  1PRU A;  4MCT A;  1ZVV A;  3NZL A;  2AXZ A;  2EWT A;  2PXD A;  2KZ8 A;  3PXP A;  2WIU B;  3GZD A;  2PUB A;  4EQZ A;  3UFD A;  4Y42 A;  3KL4 A;  3OWQ A;  5DRT A;  3A9X A;  4O8B A;  1X2L A;  1DW9 A;  5JUW A;  5GAG i;  4X4B A;  4Q2J A;  2O49 A;  3TRB A;  2PUF A;  3QFI A;  4GQM A;  2AXU A;  1UXC A;  4X4H A;  2MXD A;  1AU7 A;  3HZI B;  4ER3 A;  1LQC A;  1PNR A;  1ADR A;  1BDI A;  1L1M A;  2LYP A;  3TEL A;  4IVZ A;  2B5A A;  2M4H A;  3JXD L;  2XCJ A;  1QP0 A;  1Y9Q A;  1RZR D;  2IVB A;  3QYX A;  1POU A;  3IVP A;  4EKG A;  3BDN A;  3GN5 A;  2IVG A;  3OQN A;  2PE5 A;  1XWR A;  1QQA A;  1UTX A;  2J7U A;  3RZZ A;  3DNV B;  3R09 A;  1QP7 A;  2JVL A;  3OQO A;  2A6C A;  1NER A;  1LCD A;  3QQ6 A;  3NDB B;  2ODR D;  2IVQ A;  3LQX A;  1IC8 A;  2XXQ A;  3GUU A;  4Z58 A;  4IWR A;  3G5G A;  4OBM A;  3SR4 A;  3KJX A;  2IUO A;  2LYS A;  3S8Q A;  3TFL A;  4DE9 A;  1QB2 A;  2PUC A;  1LLI A; 
#chains in the Genus database with same CATH homology
 1U2Z A;  1NW3 A;  2J7U A;  2LLV A;  3PE5 A;  5JUW A;  2VEO A;  3UWP A;  4ER6 A;  4EKI A;  4EK9 A;  2J7W A;  3TEL A;  3R09 A;  4Q2J A;  3ME5 A;  4ER7 A;  2M4H A;  4DE8 A;  2L1P A;  3MEJ A;  3NRO A;  3A9Z A;  3A9Y A;  4EZI A;  3TEP A;  3QFI A;  3G0T A;  5DTM A;  3GZD C;  3NZL A;  2ODR D;  4ER0 A;  5DT2 A;  5DTQ A;  2HCN A;  2YBD A;  2XXQ A;  2XXP A;  3GUU A;  3QOX A;  3SX0 A;  3OKZ A;  3GZD A;  4OBM A;  3SR4 A;  4EQZ A;  4HRA A;  4EKG A;  3QOW A;  2LNM A;  2MXD A;  2HFZ A;  3ZPX A;  5DRY A;  3NXH A;  4ER3 A;  3M9L A;  5DSX A;  4ER5 A;  3OWQ A;  2LLW A;  5DTR A;  3VWS A;  2HCS A;  3TFL A;  4DE9 A;  5DRT A;  4WVL A;  3A9X A;  3GZC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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