The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
126
|
structure length |
126
|
Chain Sequence |
GFDLNDFLEQLRQMKNMGGXXXXXXXXXXXXXXXXXXXXXXDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGXXXXXXXXXXXXXXXXXXX
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb |
| molecule tags |
Ribosome
|
| molecule keywords |
SRP 4.5S RNA
|
| total genus |
30
|
| structure length |
126
|
| sequence length |
126
|
| ec nomenclature | |
| pdb deposition date | 2015-11-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| i | PF00448 | SRP54 | SRP54-type protein, GTPase domain |
| i | PF02881 | SRP54_N | SRP54-type protein, helical bundle domain |
| i | PF02978 | SRP_SPB | Signal peptide binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | Signal recognition particle, SRP54 subunit, M-domain |
#chains in the Genus database with same CATH superfamily 1HQ1 A; 2PXV A; 1QB2 A; 2PXK A; 2PXD A; 2PXT A; 2FFH A; 2PXU A; 3KL4 A; 2PXL A; 3LQX A; 2JQE A; 2PXQ A; 5GAG i; 1QZX A; 2PXP A; 5GAH i; 2PXE A; 2XXA A; 2V3C C; 2PXB A; 3DM5 A; 1DUL A; 1MFQ C; 2PXF A; 3NDB B; #chains in the Genus database with same CATH topology 1U2Z A; 3FYM A; 3NZL A; 2H8R A; 2PUB A; 4NDW A; 2PXL A; 3SCF A; 1ZZ9 A; 3F52 A; 4O8B A; 2PUG A; 3SCH A; 1DW9 A; 1AU7 A; 2L49 A; 4X4I A; 3IVP A; 3NRO A; 1LCD A; 2PUD A; 1SQ8 A; 4I8T A; 2OFY A; 2HSG A; 3CLC A; 2PXD A; 4ER0 A; 1LCC A; 5DRT A; 2AXZ A; 2WIU B; 3QQ6 A; 3QWG A; 3ME5 A; 2CSF A; 3B7H A; 1ZAY A; 4ER3 A; 3GUU A; 4Q2J A; 2D5V A; 1ZZC A; 2PXF A; 3TRB A; 2ODR D; 3U3W A; 2AXV A; 2FFH A; 4Z5D A; 4I6T A; 4X4B A; 3GN5 A; 2XIU A; 2L1P A; 3R09 A; 4PU3 C; 2YBD A; 4Z59 A; 1HF0 A; 3G5G A; 3TEL A; 1PRV A; 2PUC A; 3QFI A; 3A9Y A; 1QP0 A; 1XWR A; 1PNR A; 3A9Z A; 2O4A A; 2LYP A; 1WIZ A; 1PER L; 2BNM A; 4JQD A; 3F6W A; 2PUF A; 4PU7 A; 2B5A A; 4GHJ A; 4JCX A; 3KJX A; 2MEZ A; 4DE9 A; 2PUE A; 1NEQ A; 2XXQ A; 3ZHM A; 3OQO A; 2BNO A; 4WVL A; 5DTQ A; 2IVG A; 1OCT C; 2IVQ A; 2O38 A; 1QP7 A; 4Z5H A; 5DTM A; 2O49 A; 1QPZ A; 3QF3 A; 4EKI A; 1Y9Q A; 1B0N A; 1UTX A; 2LYK A; 2PXE A; 4ER5 A; 2JVL A; 3DM5 A; 1UXD A; 3NXH A; 4OBM A; 4X4H A; 2J7W A; 4FN3 A; 2PPX A; 3S8Q A; 3BDN A; 3G7D A; 2OR1 L; 2KEJ A; 3GZD C; 4GQM A; 2FJR A; 3HZI B; 2GRM A; 3G0T A; 1ZZB A; 1LMB 3; 1ZPQ A; 4X4E A; 1MFQ C; 1ZZ6 A; 1JFT A; 5K98 B; 4ER6 A; 3ZPX A; 2J7U A; 1YSE A; 1BDH A; 1ZVV A; 2WUS R; 5DSX A; 3TEP A; 1JFS A; 1ZZ8 A; 3KL4 A; 1NER A; 3BD1 A; 3GZD A; 3FMY A; 4MCX A; 4PU4 C; 2HCN A; 2LCV A; 2R1J L; 4MCT A; 3GBF A; 3OWQ A; 2MQK A; 3NDB B; 3QYX A; 4X4F A; 2IVB A; 2AUW A; 2EWT A; 5DT2 A; 2LYL A; 1RZS A; 2LYJ A; 1NW3 A; 5DTR A; 3D1N I; 4PU8 A; 1QZX A; 2PUA A; 2AWI A; 1CQT A; 1WET A; 4X4G A; 4IVZ A; 4EZI A; 2HCS A; 2IUO A; 2HFZ A; 2PXV A; 3UFD A; 2BNN A; 5DRY A; 1L1M A; 1VPW A; 5JUW A; 4Z58 A; 4YBA A; 2XXP A; 2CRO A; 1QP4 A; 1LLI A; 4EQZ A; 1S7E A; 3EUS A; 3CEC A; 1PRA A; 2BJC A; 4JCY A; 3QOW A; 3PE5 A; 2ICT A; 2XCJ A; 3OQN A; 3SX0 A; 4YG7 B; 3PXP A; 5GAG i; 4DE8 A; 4X4C A; 5GAH i; 2XSD C; 4X4D A; 4YG1 A; 3QOX A; 3OKZ A; 2VEO A; 3OQM A; 3LFP A; 3UWP A; 2JCG A; 1WH6 A; 3LQX A; 2EBY A; 4IWR A; 2IV1 A; 2PXP A; 3JXD L; 1CJG A; 3ZHI A; 1IC8 A; 2A6C A; 2KZ8 A; 2PE5 A; 1WH8 A; 2GZU A; 2KPJ A; 3KZ3 A; 2GRL A; 2HIN A; 3RZZ A; 4IA8 A; 3R1F A; 1LQC A; 1ZS4 A; 1POU A; 3LIS A; 2KEI A; 2JQE A; 4Y42 A; 1OSL A; 2PXB A; 3M9L A; 3GZC A; 3JXC L; 1RPE L; 3VWS A; 4I6U A; 3OMT A; 3DNV B; 3MEJ A; 4YAR A; 1QQA A; 3TFL A; 2LYS A; 2PXK A; 4FBI A; 1GT0 C; 2LNM A; 1O4X A; 2AW6 A; 4OB4 A; 3ZKC A; 3KXA A; 2KEK A; 3OP9 A; 1Y7Y A; 5A7L A; 1DWK A; 2IU7 A; 1PRU A; 2EF8 A; 3O9X A; 4J1X A; 1X57 A; 2M4H A; 2PXU A; 3CRO L; 1UXC A; 4HRA A; 1EFA A; 2LLW A; 2LYQ A; 3BS3 A; 2PIJ A; 1E3O C; 2AXU A; 2L8N A; 4EK9 A; 1BDI A; 2LYR A; 1HQ1 A; 4EKG A; 1ZZ7 A; 1QB2 A; 1RZR A; 2ICP A; 1JH9 A; 4F8D A; 3VK0 A; 3FYA A; 1QQB A; 3L1P A; 2XXA A; 2V3C C; 3MLF A; 3GN5 B; 4YG4 A; 4ER7 A; 1X2L A; 1RZR D; 3A9X A; 2PXT A; 3SR4 A; 4J1W A; 1ADR A; 1R63 A; 2LLV A; 4I6R A; 1ZUG A; 3JXB C; 2R63 A; 2PXQ A; 2MXD A; 3H5T A; 3SCG A; 1R69 A; 1DUL A; 3F51 A; 1RIO A; 2XI8 A; 2XJ3 A; 4Z5C A; 1JWL A; #chains in the Genus database with same CATH homology 1HQ1 A; 2PXV A; 1QB2 A; 2PXK A; 2PXD A; 2PXT A; 2FFH A; 2PXU A; 3KL4 A; 2PXL A; 3LQX A; 2JQE A; 2PXQ A; 5GAG i; 1QZX A; 2PXP A; 5GAH i; 2PXE A; 2XXA A; 2V3C C; 2PXB A; 3DM5 A; 1DUL A; 1MFQ C; 2PXF A; 3NDB B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
