3RV0A

Crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
246
structure length
239
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Vanderwaltozyma polyspora
molecule keywords K. polysporus Dcr1
total genus 81
structure length 239
sequence length 246
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00035 dsrm Double-stranded RNA binding motif
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv0A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv0A01
2QVWA 3C4BA 1YYKA 2A11A 4M30A 1U61A 1O0WA 3RV1A 1RC5A 2FFLA 1RC7A 2NUFA 4M2ZA 2NUGA 4OUNA 2EZ6A 2NUEA 1YYOA 1YYWA 1I4SA 3O2RB 3O2RA 2EB1A 3RV0A 1JFZA 4OOGC 2GSLA 1YZ9A 3C4TA 3N3WA
chains in the Genus database with same CATH superfamily
1QX1A 4AZBA 4HYBA 2X3XA 4HR1A 5FIGA 3SYVA 1RC7A 4AZCB 2NUFA 2Z0NA 3EJQA 3EJPA 3LVTA 4EZRA 4UDYX 3OWGA 2YLLA 3EJTA 2JNSA 2JNKA 2NCZA 3O2RB 2X3VA 4G6QA 3DYTA 1E2UA 2WINM 2QKWA 4JL9A 4EZSA 1WDZA 1TQVA 3ER8C 3D50A 4M30A 3BUIA 4EZTA 1SU8A 1X03A 1YYOA 4NSWA 4AZ7A 3CZNA 2Q12A 2EB1A 3CKDA 2YIVX 3QA8A 5KBPA 4JWEA 3O3MB 2QXLA 4AVMA 3EJSA 1YYKA 2RT6A 4AZHA 4M2ZA 3ER9B 4EZVA 4FM3A 2Z0VA 2F7PA 4F00A 2RAKA 3O2RA 1R5EA 4FZSA 3T48A 3DPOA 2A11A 3B52X 3RV1A 3ABHA 2ELBA 2NUGA 5E84A 2KHOA 1E9VA 2F1BA 3BUBA 5FLEX 2NUEA 4B9QA 1R33A 1I4LA 2N3KA 2Q13A 3EJUA 4KIKB 3D4ZA 3QNJA 1JFZA 1JQKA 1O7DB 2QVWA 3BVTA 1QWUA 4M0MA 1HTYA 3RPMA 3UITA 1OAOA 2GF4A 3KAWA 4EZWA 2EWFA 3O3NB 2FYVA 2F7QA 3I04A 3CV5A 3BLBA 4NQIA 1YZ9A 2F7RA 4IM3A 1GN9A 4ATMA 3T46A 3M3WA 2MI7A 1U00A 4BNEA 3DDGA 1QWNA 1W9MA 3VEBA 3HAIA 2OO2A 3D2EA 1I49A 3CZSA 2EX3B 4R5JA 4DCNC 1SUFA 2YI9A 4IWQA 4FZOA 3ERCC 3OHXM 3B51X 3D2FA 3D52A 2YIAA 4I1QA 2FFLA 3BUDA 2YL9A 1I4TA 1HXKA 4EZYA 5C5BA 3DX1A 1O7DC 1SU7A 4FZPA 2ZXQA 3C4TA 3ACOA 3I01A 4JWCA 3PLTA 2YI8A 4AZCA 4OUNA 4AZIA 4AZ6A 1YWMA 3ZEDA 1PS3A 4WPEA 3Q84A 4IM2A 3FD9A 3GI7A 1DKYA 4R5GA 2O0I1 3EJRA 1TQWA 3LMFA 3D4YA 4R5IA 2YL6A 1LQ7A 4IM0A 3VKHA 2FICA 3RV0A 2OW7A 4EZNA 4WPCA 2OZNB 2RAIA 1GNTA 3HAHA 4IW0A 3KDRA 4R5LA 4HR1B 4EZQA 1GNLA 2ALWA 1I4DA 2V0OA 3C7NA 2LXYA 3B53X 1I4SA 3BVWA 2D1LA 4PO2A 3VEAA 1URUA 3DPQA 4IWOA 1RC5A 1TQUA 2OW6A 3O3OB 4IWPA 1DKZA 4DYLA 4KIKA 3QNIA 2GSLA 2X5CA 3SOGA 1UPXA 1HWWA 2YLAA 1O0WA 3I39X 4NPHA 1X04A 1TQTA 2YIBA 1ZYLA 2D4CA 4JNFA 3OK8A 4E81A 4JWDA 3DX0A 3DDFA 2PMRA 2EFLA 1ZWWA 4AZ5A 1Y2OA 2RAJA 3CAZA 1ZTDA 3I2WA 2ND1A 1YYWA 1DKXA 2WYHA 4JNEA 3HAJA 4EZOA 5TKYA 3N3WA 3QE6A 2WYIA 2YKTA 3DX2A 2X3WA 4EZXA 2EFKA 3BVUA 3F7WA 1TQSA 4EZUA 2YL8A 3A98A 2C08A 4H6HA 2F18A 2QFFA 4JWIA 3L3PA 4OOGC 3T4AG 3T47A 1E1DA 4R5KA 3DPPA 4AKVA 4JN4A 4H8SA 2EZ6A 4JLCA 4D8JA 4F01A 4EZZA 2Z0OA 3L3OM 3Q0KA 3BUQA 2OBMA 2F1AA 3BVVA 2OBLA 1MJGA 2LM0A 2F7OA 1OA1A 2PY6A 2YL5A 3C4BA 3QWEA 4H6IA 1OA0A 1U61A 3DX4A 3KAVA 3CVRA 4EZPA 4E3CA 3DX3A 5C5BB 3T49A 3LLLA 2GAFD 2GA9D 3BVXA 4UDXX 2Z8YA 4HY9A 2ND0A 4AZGA 3G9GA 3D51A 3BUPA 1R34A 1SU6A
chains in the Genus database with same CATH topology
4JWDA 4R5GA 2QVWA 4M0MA 4HYBA 3LMFA 4HR1A 5FIGA 4R5IA 1RC7A 2NUFA 3UITA 1OAOA 4EZRA 4UDYX 3KAWA 3OWGA 4EZWA 4IM0A 2JNSA 2NCZA 2EWFA 2ND1A 3O3NB 1YYWA 1DKXA 3O2RB 3VKHA 4G6QA 3RV0A 3I04A 1E2UA 2WINM 4JNEA 4JL9A 4EZNA 1YZ9A 4IM3A 1GN9A 4EZOA 5TKYA 3N3WA 4EZSA 3T46A 4IW0A 1GNTA 4R5LA 3ER8C 3KDRA 4HR1B 4EZQA 1U00A 4M30A 1W9MA 3VEBA 4EZXA 3D2EA 3F7WA 1GNLA 4EZUA 4EZTA 1SU8A 3C7NA 3A98A 2EX3B 3B53X 4H6HA 1YYOA 2QFFA 4R5JA 1I4SA 1SUFA 2EB1A 2YI9A 4PO2A 4IWQA 4JWIA 4OOGC 2YIVX 3QA8A 3OHXM 3VEAA 3ERCC 3T4AG 4JWEA 3O3MB 3T47A 3B51X 2QXLA 3D2FA 3DPQA 1E1DA 4IWOA 2YIAA 4R5KA 1YYKA 2RT6A 3DPPA 1RC5A 2FFLA 4JN4A 4M2ZA 2EZ6A 4JLCA 4D8JA 3ER9B 3O3OB 4EZZA 4IWPA 4F01A 3L3OM 4EZYA 4EZVA 1DKZA 4FM3A 4F00A 2OBMA 3O2RA 1SU7A 4KIKA 2OBLA 2GSLA 1MJGA 2LM0A 3C4TA 3I01A 4JWCA 1OA1A 2PY6A 2X5CA 3GI7A 3T48A 3C4BA 4H6IA 1UPXA 3DPOA 2YI8A 1OA0A 2A11A 3B52X 1U61A 1O0WA 3RV1A 3I39X 4NPHA 2NUGA 5E84A 4OUNA 3KAVA 4EZPA 4E3CA 2KHOA 1E9VA 3T49A 2GAFD 2GA9D 5FLEX 2NUEA 4B9QA 4UDXX 2N3KA 2Z8YA 4HY9A 4KIKB 3ZEDA 2ND0A 3QNJA 2YIBA 1ZYLA 1JFZA 4IM2A 1JQKA 4JNFA 3FD9A 1DKYA 1SU6A 4E81A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QVW A;  3C4B A;  1YYK A;  2A11 A;  4M30 A;  1U61 A;  1O0W A;  3RV1 A;  1RC5 A;  2FFL A;  1RC7 A;  2NUF A;  4M2Z A;  2NUG A;  4OUN A;  2EZ6 A;  2NUE A;  1YYO A;  1YYW A;  1I4S A;  3O2R B;  3O2R A;  2EB1 A;  3RV0 A;  1JFZ A;  4OOG C;  2GSL A;  1YZ9 A;  3C4T A;  3N3W A; 
#chains in the Genus database with same CATH topology
 1QX1 A;  4AZB A;  4HYB A;  2X3X A;  4HR1 A;  5FIG A;  3SYV A;  1RC7 A;  4AZC B;  2NUF A;  2Z0N A;  3EJQ A;  3EJP A;  3LVT A;  4EZR A;  4UDY X;  3OWG A;  2YLL A;  3EJT A;  2JNS A;  2JNK A;  2NCZ A;  3O2R B;  2X3V A;  4G6Q A;  3DYT A;  1E2U A;  2WIN M;  2QKW A;  4JL9 A;  4EZS A;  1WDZ A;  1TQV A;  3ER8 C;  3D50 A;  4M30 A;  3BUI A;  4EZT A;  1SU8 A;  1X03 A;  1YYO A;  4NSW A;  4AZ7 A;  3CZN A;  2Q12 A;  2EB1 A;  3CKD A;  2YIV X;  3QA8 A;  5KBP A;  4JWE A;  3O3M B;  2QXL A;  4AVM A;  3EJS A;  1YYK A;  2RT6 A;  4AZH A;  4M2Z A;  3ER9 B;  4EZV A;  4FM3 A;  2Z0V A;  2F7P A;  4F00 A;  2RAK A;  3O2R A;  1R5E A;  4FZS A;  3T48 A;  3DPO A;  2A11 A;  3B52 X;  3RV1 A;  3ABH A;  2ELB A;  2NUG A;  5E84 A;  2KHO A;  1E9V A;  2F1B A;  3BUB A;  5FLE X;  2NUE A;  4B9Q A;  1R33 A;  1I4L A;  2N3K A;  2Q13 A;  3EJU A;  4KIK B;  3D4Z A;  3QNJ A;  1JFZ A;  1JQK A;  1O7D B;  2QVW A;  3BVT A;  1QWU A;  4M0M A;  1HTY A;  3RPM A;  3UIT A;  1OAO A;  2GF4 A;  3KAW A;  4EZW A;  2EWF A;  3O3N B;  2FYV A;  2F7Q A;  3I04 A;  3CV5 A;  3BLB A;  4NQI A;  1YZ9 A;  2F7R A;  4IM3 A;  1GN9 A;  4ATM A;  3T46 A;  3M3W A;  2MI7 A;  1U00 A;  4BNE A;  3DDG A;  1QWN A;  1W9M A;  3VEB A;  3HAI A;  2OO2 A;  3D2E A;  1I49 A;  3CZS A;  2EX3 B;  4R5J A;  4DCN C;  1SUF A;  2YI9 A;  4IWQ A;  4FZO A;  3ERC C;  3OHX M;  3B51 X;  3D2F A;  3D52 A;  2YIA A;  4I1Q A;  2FFL A;  3BUD A;  2YL9 A;  1I4T A;  1HXK A;  4EZY A;  5C5B A;  3DX1 A;  1O7D C;  1SU7 A;  4FZP A;  2ZXQ A;  3C4T A;  3ACO A;  3I01 A;  4JWC A;  3PLT A;  2YI8 A;  4AZC A;  4OUN A;  4AZI A;  4AZ6 A;  1YWM A;  3ZED A;  1PS3 A;  4WPE A;  3Q84 A;  4IM2 A;  3FD9 A;  3GI7 A;  1DKY A;  4R5G A;  2O0I 1;  3EJR A;  1TQW A;  3LMF A;  3D4Y A;  4R5I A;  2YL6 A;  1LQ7 A;  4IM0 A;  3VKH A;  2FIC A;  3RV0 A;  2OW7 A;  4EZN A;  4WPC A;  2OZN B;  2RAI A;  1GNT A;  3HAH A;  4IW0 A;  3KDR A;  4R5L A;  4HR1 B;  4EZQ A;  1GNL A;  2ALW A;  1I4D A;  2V0O A;  3C7N A;  2LXY A;  3B53 X;  1I4S A;  3BVW A;  2D1L A;  4PO2 A;  3VEA A;  1URU A;  3DPQ A;  4IWO A;  1RC5 A;  1TQU A;  2OW6 A;  3O3O B;  4IWP A;  1DKZ A;  4DYL A;  4KIK A;  3QNI A;  2GSL A;  2X5C A;  3SOG A;  1UPX A;  1HWW A;  2YLA A;  1O0W A;  3I39 X;  4NPH A;  1X04 A;  1TQT A;  2YIB A;  1ZYL A;  2D4C A;  4JNF A;  3OK8 A;  4E81 A;  4JWD A;  3DX0 A;  3DDF A;  2PMR A;  2EFL A;  1ZWW A;  4AZ5 A;  1Y2O A;  2RAJ A;  3CAZ A;  1ZTD A;  3I2W A;  2ND1 A;  1YYW A;  1DKX A;  2WYH A;  4JNE A;  3HAJ A;  4EZO A;  5TKY A;  3N3W A;  3QE6 A;  2WYI A;  2YKT A;  3DX2 A;  2X3W A;  4EZX A;  2EFK A;  3BVU A;  3F7W A;  1TQS A;  4EZU A;  2YL8 A;  3A98 A;  2C08 A;  4H6H A;  2F18 A;  2QFF A;  4JWI A;  3L3P A;  4OOG C;  3T4A G;  3T47 A;  1E1D A;  4R5K A;  3DPP A;  4AKV A;  4JN4 A;  4H8S A;  2EZ6 A;  4JLC A;  4D8J A;  4F01 A;  4EZZ A;  2Z0O A;  3L3O M;  3Q0K A;  3BUQ A;  2OBM A;  2F1A A;  3BVV A;  2OBL A;  1MJG A;  2LM0 A;  2F7O A;  1OA1 A;  2PY6 A;  2YL5 A;  3C4B A;  3QWE A;  4H6I A;  1OA0 A;  1U61 A;  3DX4 A;  3KAV A;  3CVR A;  4EZP A;  4E3C A;  3DX3 A;  5C5B B;  3T49 A;  3LLL A;  2GAF D;  2GA9 D;  3BVX A;  4UDX X;  2Z8Y A;  4HY9 A;  2ND0 A;  4AZG A;  3G9G A;  3D51 A;  3BUP A;  1R34 A;  1SU6 A; 
#chains in the Genus database with same CATH homology
 4JWD A;  4R5G A;  2QVW A;  4M0M A;  4HYB A;  3LMF A;  4HR1 A;  5FIG A;  4R5I A;  1RC7 A;  2NUF A;  3UIT A;  1OAO A;  4EZR A;  4UDY X;  3KAW A;  3OWG A;  4EZW A;  4IM0 A;  2JNS A;  2NCZ A;  2EWF A;  2ND1 A;  3O3N B;  1YYW A;  1DKX A;  3O2R B;  3VKH A;  4G6Q A;  3RV0 A;  3I04 A;  1E2U A;  2WIN M;  4JNE A;  4JL9 A;  4EZN A;  1YZ9 A;  4IM3 A;  1GN9 A;  4EZO A;  5TKY A;  3N3W A;  4EZS A;  3T46 A;  4IW0 A;  1GNT A;  4R5L A;  3ER8 C;  3KDR A;  4HR1 B;  4EZQ A;  1U00 A;  4M30 A;  1W9M A;  3VEB A;  4EZX A;  3D2E A;  3F7W A;  1GNL A;  4EZU A;  4EZT A;  1SU8 A;  3C7N A;  3A98 A;  2EX3 B;  3B53 X;  4H6H A;  1YYO A;  2QFF A;  4R5J A;  1I4S A;  1SUF A;  2EB1 A;  2YI9 A;  4PO2 A;  4IWQ A;  4JWI A;  4OOG C;  2YIV X;  3QA8 A;  3OHX M;  3VEA A;  3ERC C;  3T4A G;  4JWE A;  3O3M B;  3T47 A;  3B51 X;  2QXL A;  3D2F A;  3DPQ A;  1E1D A;  4IWO A;  2YIA A;  4R5K A;  1YYK A;  2RT6 A;  3DPP A;  1RC5 A;  2FFL A;  4JN4 A;  4M2Z A;  2EZ6 A;  4JLC A;  4D8J A;  3ER9 B;  3O3O B;  4EZZ A;  4IWP A;  4F01 A;  3L3O M;  4EZY A;  4EZV A;  1DKZ A;  4FM3 A;  4F00 A;  2OBM A;  3O2R A;  1SU7 A;  4KIK A;  2OBL A;  2GSL A;  1MJG A;  2LM0 A;  3C4T A;  3I01 A;  4JWC A;  1OA1 A;  2PY6 A;  2X5C A;  3GI7 A;  3T48 A;  3C4B A;  4H6I A;  1UPX A;  3DPO A;  2YI8 A;  1OA0 A;  2A11 A;  3B52 X;  1U61 A;  1O0W A;  3RV1 A;  3I39 X;  4NPH A;  2NUG A;  5E84 A;  4OUN A;  3KAV A;  4EZP A;  4E3C A;  2KHO A;  1E9V A;  3T49 A;  2GAF D;  2GA9 D;  5FLE X;  2NUE A;  4B9Q A;  4UDX X;  2N3K A;  2Z8Y A;  4HY9 A;  4KIK B;  3ZED A;  2ND0 A;  3QNJ A;  2YIB A;  1ZYL A;  1JFZ A;  4IM2 A;  1JQK A;  4JNF A;  3FD9 A;  1DKY A;  1SU6 A;  4E81 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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