3RV0A

Crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
246
structure length
239
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH4 (86-93)EMPTYTI5 (80-83)AH1 (15-42)AH3 (69-79)AH2 (60-67)TI1 (43-46)TI2 (44-47)TI4 (50-53)TII1 (53-56)AH10 (213-234)TI6 (96-99)TI7 (100-103)3H1 (103-105)AH8 (171-182)AH6 (135-139)AH7 (143-165)TI8 (166-169)3H2 (196-199)AH11 (239-255)TI3 (47-50)AH9 (184-194)AH5 (114-121)TIV2 (139-142)Updating...
connected with : NaN
molecule tags Rna binding protein
source organism Vanderwaltozyma polyspora
publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
molecule keywords K. polysporus Dcr1
total genus 81
structure length 239
sequence length 246
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00035 dsrm Double-stranded RNA binding motif
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv0A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv0A01
1YYWA 1RC5A 1RC7A 3O2RA 4OUNA 3C4TA 2EZ6A 2NUEA 3O2RB 1YYKA 2A11A 3N3WA 2NUGA 2NUFA 2FFLA 2QVWA 1O0WA 1U61A 1I4SA 4OOGC 2GSLA 3RV0A 3RV1A 1JFZA 4M30A 1YZ9A 4M2ZA 3C4BA 2EB1A 1YYOA
chains in the Genus database with same CATH superfamily
1Y2OA 3F7WA 4EZYA 1I4DA 3O2RA 4EZQA 3EJSA 4AVMA 3DDFA 4EZWA 4JL9A 2YIBA 3BUIA 4H6HA 4FZOA 2FICA 1SU8A 1HTYA 2F1AA 3ERCC 3O2RB 3L3PA 3L3OM 3I39X 2YI9A 4JWCA 2F18A 1E1DA 2NUFA 3LMFA 2QVWA 1LQ7A 2OO2A 4EZTA 2YLAA 1DKYA 2F7QA 3T46A 4R5GA 4JNFA 2RAIA 2F7PA 1X03A 3Q0KA 1SU7A 4JWIA 3D51A 4EZRA 1MJGA 3I04A 3N3WA 4R5LA 2PMRA 2OW6A 3D52A 1PS3A 2ND0A 4EZVA 4R5KA 4DYLA 4E3CA 3D50A 3CZNA 4AZ6A 3DPQA 2ZXQA 1WDZA 4AZ5A 1I4LA 4JWEA 4D8JA 2NUGA 1ZTDA 1W9MA 4WPEA 2MI7A 2QKWA 3ABHA 1ZYLA 3DYTA 4EZUA 2YIAA 3VEBA 1GNLA 1HXKA 4IM3A 3T49A 3OK8A 3B53X 2NUEA 4G6QA 3Q84A 5TKYA 4E81A 1GN9A 2LM0A 3EJTA 2X3XA 3UITA 3DX0A 3O3MB 4JNEA 2NCZA 3O3NB 2YL9A 4EZOA 3DPPA 1R34A 2ND1A 1TQUA 2Z0OA 2YI8A 1RC7A 4DCNC 5FIGA 5KBPA 3BVXA 3EJUA 2EX3B 4AZ7A 1JQKA 1O7DB 1I4SA 3CV5A 2KHOA 2YLLA 1YYOA 2WINM 2OW7A 3KAVA 3C4TA 1E9VA 3ER8C 2F1BA 3D4ZA 2Z0NA 2X3WA 2WYIA 3CKDA 2JNSA 3HAHA 3KAWA 2FFLA 2Z8YA 1URUA 3GI7A 3A98A 2D4CA 2Z0VA 2O0I1 1HWWA 2X3VA 4R5JA 4OUNA 1QWUA 4FZPA 3DX2A 5C5BA 1YYKA 2Q12A 2OBLA 3KDRA 1DKXA 3I2WA 3DX4A 2C08A 4FZSA 3BUBA 3SYVA 4IWPA 4M0MA 3LVTA 4AZHA 3T4AG 3D4YA 2EB1A 2GF4A 1ZWWA 4H8SA 3BLBA 4EZNA 3BUPA 3BVTA 3VKHA 2A11A 2EFLA 2N3KA 3LLLA 5C5BB 3I01A 4NPHA 2WYHA 1YWMA 3CZSA 3O3OB 3DPOA 4H6IA 5FLEX 3EJPA 3T47A 3QA8A 3CVRA 4AZBA 3QWEA 2EWFA 1QWNA 4EZSA 2OZNB 3C4BA 1X04A 4IM2A 4ATMA 3BUQA 4HYBA 3BUDA 3ACOA 2FYVA 3T48A 2Q13A 4IWQA 2RAJA 4HY9A 4AKVA 1U00A 4I1QA 2YIVX 4UDXX 2EFKA 3BVVA 2EZ6A 4F00A 1O7DC 4JWDA 3DX1A 4IW0A 1OAOA 4EZXA 3CAZA 1UPXA 2RAKA 4HR1A 1TQSA 3OHXM 3EJRA 2OBMA 2F7OA 3FD9A 1YYWA 3BVUA 1DKZA 3RPMA 4UDYX 2LXYA 1I4TA 4B9QA 4IWOA 3VEAA 1TQWA 3DX3A 2QXLA 2X5CA 3ER9B 4HR1B 2PY6A 1O0WA 4AZCA 2GSLA 4WPCA 4EZPA 3HAJA 4AZIA 3QNIA 1RC5A 2F7RA 4KIKA 2ELBA 2JNKA 5E84A 4NSWA 3QNJA 4JN4A 4PO2A 2GAFD 4BNEA 3BVWA 2RT6A 4JLCA 1OA1A 3RV1A 4AZCB 1E2UA 3DDGA 1R33A 3OWGA 1SU6A 1OA0A 4EZZA 4KIKB 2QFFA 4IM0A 3HAIA 3EJQA 1I49A 1QX1A 2D1LA 3B52X 2YL6A 1SUFA 2V0OA 4OOGC 3PLTA 3RV0A 4R5IA 4FM3A 1JFZA 4M30A 1YZ9A 3QE6A 4F01A 3C7NA 2YL5A 3B51X 3ZEDA 4NQIA 2YKTA 1GNTA 3M3WA 1U61A 1TQTA 1TQVA 2YL8A 2GA9D 2ALWA 3D2FA 3G9GA 4AZGA 1R5EA 4M2ZA 3D2EA 3SOGA
chains in the Genus database with same CATH topology
1GNLA 2OBMA 3F7WA 3FD9A 4EZYA 1YYWA 3O2RA 4IM3A 3T49A 3B53X 1DKZA 4EZNA 2NUEA 4G6QA 4UDYX 4EZQA 3VKHA 5TKYA 2A11A 2N3KA 4E81A 1GN9A 2LM0A 4B9QA 4IWOA 3VEAA 3UITA 3I01A 2QXLA 2X5CA 4NPHA 3O3MB 4EZWA 3ER9B 4HR1B 2PY6A 3O3OB 4JNEA 1O0WA 3DPOA 2NCZA 4H6IA 4JL9A 3O3NB 2GSLA 5FLEX 2YIBA 4H6HA 4EZOA 4EZPA 3DPPA 3T47A 3QA8A 2ND1A 1SU8A 1RC5A 4KIKA 2YI8A 1RC7A 5E84A 3ERCC 3O2RB 3QNJA 5FIGA 3L3OM 4JN4A 2EWFA 3I39X 2YI9A 2EX3B 4JWCA 4PO2A 1JQKA 2GAFD 1E1DA 2NUFA 3LMFA 2QVWA 2RT6A 1I4SA 4JLCA 4EZTA 4EZSA 2KHOA 1OA1A 1DKYA 3RV1A 1E2UA 3C4BA 3T46A 4R5GA 1YYOA 2WINM 4JNFA 4IM2A 3OWGA 1SU6A 4HYBA 3KAVA 1OA0A 4EZZA 3C4TA 4KIKB 2QFFA 1SU7A 4IM0A 4JWIA 1E9VA 4EZRA 3ER8C 1MJGA 3I04A 3N3WA 3T48A 4R5LA 4IWQA 2JNSA 3B52X 3KAWA 2FFLA 4HY9A 1SUFA 4OOGC 1U00A 2ND0A 2Z8YA 3RV0A 4R5IA 4FM3A 4EZVA 4R5KA 1JFZA 4M30A 2YIVX 3GI7A 1YZ9A 4UDXX 3A98A 4E3CA 4F01A 3C7NA 4R5JA 4OUNA 2EZ6A 3B51X 3DPQA 4F00A 3ZEDA 4JWDA 1YYKA 2OBLA 1OAOA 3KDRA 4IW0A 1DKXA 4JWEA 4EZXA 1UPXA 1GNTA 4D8JA 4HR1A 2NUGA 1W9MA 1U61A 3OHXM 2GA9D 1ZYLA 3D2FA 4IWPA 4M0MA 3T4AG 4EZUA 2YIAA 4M2ZA 3D2EA 2EB1A 3VEBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YYW A;  1RC5 A;  1RC7 A;  3O2R A;  4OUN A;  3C4T A;  2EZ6 A;  2NUE A;  3O2R B;  1YYK A;  2A11 A;  3N3W A;  2NUG A;  2NUF A;  2FFL A;  2QVW A;  1O0W A;  1U61 A;  1I4S A;  4OOG C;  2GSL A;  3RV0 A;  3RV1 A;  1JFZ A;  4M30 A;  1YZ9 A;  4M2Z A;  3C4B A;  2EB1 A;  1YYO A; 
#chains in the Genus database with same CATH topology
 1Y2O A;  3F7W A;  4EZY A;  1I4D A;  3O2R A;  4EZQ A;  3EJS A;  4AVM A;  3DDF A;  4EZW A;  4JL9 A;  2YIB A;  3BUI A;  4H6H A;  4FZO A;  2FIC A;  1SU8 A;  1HTY A;  2F1A A;  3ERC C;  3O2R B;  3L3P A;  3L3O M;  3I39 X;  2YI9 A;  4JWC A;  2F18 A;  1E1D A;  2NUF A;  3LMF A;  2QVW A;  1LQ7 A;  2OO2 A;  4EZT A;  2YLA A;  1DKY A;  2F7Q A;  3T46 A;  4R5G A;  4JNF A;  2RAI A;  2F7P A;  1X03 A;  3Q0K A;  1SU7 A;  4JWI A;  3D51 A;  4EZR A;  1MJG A;  3I04 A;  3N3W A;  4R5L A;  2PMR A;  2OW6 A;  3D52 A;  1PS3 A;  2ND0 A;  4EZV A;  4R5K A;  4DYL A;  4E3C A;  3D50 A;  3CZN A;  4AZ6 A;  3DPQ A;  2ZXQ A;  1WDZ A;  4AZ5 A;  1I4L A;  4JWE A;  4D8J A;  2NUG A;  1ZTD A;  1W9M A;  4WPE A;  2MI7 A;  2QKW A;  3ABH A;  1ZYL A;  3DYT A;  4EZU A;  2YIA A;  3VEB A;  1GNL A;  1HXK A;  4IM3 A;  3T49 A;  3OK8 A;  3B53 X;  2NUE A;  4G6Q A;  3Q84 A;  5TKY A;  4E81 A;  1GN9 A;  2LM0 A;  3EJT A;  2X3X A;  3UIT A;  3DX0 A;  3O3M B;  4JNE A;  2NCZ A;  3O3N B;  2YL9 A;  4EZO A;  3DPP A;  1R34 A;  2ND1 A;  1TQU A;  2Z0O A;  2YI8 A;  1RC7 A;  4DCN C;  5FIG A;  5KBP A;  3BVX A;  3EJU A;  2EX3 B;  4AZ7 A;  1JQK A;  1O7D B;  1I4S A;  3CV5 A;  2KHO A;  2YLL A;  1YYO A;  2WIN M;  2OW7 A;  3KAV A;  3C4T A;  1E9V A;  3ER8 C;  2F1B A;  3D4Z A;  2Z0N A;  2X3W A;  2WYI A;  3CKD A;  2JNS A;  3HAH A;  3KAW A;  2FFL A;  2Z8Y A;  1URU A;  3GI7 A;  3A98 A;  2D4C A;  2Z0V A;  2O0I 1;  1HWW A;  2X3V A;  4R5J A;  4OUN A;  1QWU A;  4FZP A;  3DX2 A;  5C5B A;  1YYK A;  2Q12 A;  2OBL A;  3KDR A;  1DKX A;  3I2W A;  3DX4 A;  2C08 A;  4FZS A;  3BUB A;  3SYV A;  4IWP A;  4M0M A;  3LVT A;  4AZH A;  3T4A G;  3D4Y A;  2EB1 A;  2GF4 A;  1ZWW A;  4H8S A;  3BLB A;  4EZN A;  3BUP A;  3BVT A;  3VKH A;  2A11 A;  2EFL A;  2N3K A;  3LLL A;  5C5B B;  3I01 A;  4NPH A;  2WYH A;  1YWM A;  3CZS A;  3O3O B;  3DPO A;  4H6I A;  5FLE X;  3EJP A;  3T47 A;  3QA8 A;  3CVR A;  4AZB A;  3QWE A;  2EWF A;  1QWN A;  4EZS A;  2OZN B;  3C4B A;  1X04 A;  4IM2 A;  4ATM A;  3BUQ A;  4HYB A;  3BUD A;  3ACO A;  2FYV A;  3T48 A;  2Q13 A;  4IWQ A;  2RAJ A;  4HY9 A;  4AKV A;  1U00 A;  4I1Q A;  2YIV X;  4UDX X;  2EFK A;  3BVV A;  2EZ6 A;  4F00 A;  1O7D C;  4JWD A;  3DX1 A;  4IW0 A;  1OAO A;  4EZX A;  3CAZ A;  1UPX A;  2RAK A;  4HR1 A;  1TQS A;  3OHX M;  3EJR A;  2OBM A;  2F7O A;  3FD9 A;  1YYW A;  3BVU A;  1DKZ A;  3RPM A;  4UDY X;  2LXY A;  1I4T A;  4B9Q A;  4IWO A;  3VEA A;  1TQW A;  3DX3 A;  2QXL A;  2X5C A;  3ER9 B;  4HR1 B;  2PY6 A;  1O0W A;  4AZC A;  2GSL A;  4WPC A;  4EZP A;  3HAJ A;  4AZI A;  3QNI A;  1RC5 A;  2F7R A;  4KIK A;  2ELB A;  2JNK A;  5E84 A;  4NSW A;  3QNJ A;  4JN4 A;  4PO2 A;  2GAF D;  4BNE A;  3BVW A;  2RT6 A;  4JLC A;  1OA1 A;  3RV1 A;  4AZC B;  1E2U A;  3DDG A;  1R33 A;  3OWG A;  1SU6 A;  1OA0 A;  4EZZ A;  4KIK B;  2QFF A;  4IM0 A;  3HAI A;  3EJQ A;  1I49 A;  1QX1 A;  2D1L A;  3B52 X;  2YL6 A;  1SUF A;  2V0O A;  4OOG C;  3PLT A;  3RV0 A;  4R5I A;  4FM3 A;  1JFZ A;  4M30 A;  1YZ9 A;  3QE6 A;  4F01 A;  3C7N A;  2YL5 A;  3B51 X;  3ZED A;  4NQI A;  2YKT A;  1GNT A;  3M3W A;  1U61 A;  1TQT A;  1TQV A;  2YL8 A;  2GA9 D;  2ALW A;  3D2F A;  3G9G A;  4AZG A;  1R5E A;  4M2Z A;  3D2E A;  3SOG A; 
#chains in the Genus database with same CATH homology
 1GNL A;  2OBM A;  3F7W A;  3FD9 A;  4EZY A;  1YYW A;  3O2R A;  4IM3 A;  3T49 A;  3B53 X;  1DKZ A;  4EZN A;  2NUE A;  4G6Q A;  4UDY X;  4EZQ A;  3VKH A;  5TKY A;  2A11 A;  2N3K A;  4E81 A;  1GN9 A;  2LM0 A;  4B9Q A;  4IWO A;  3VEA A;  3UIT A;  3I01 A;  2QXL A;  2X5C A;  4NPH A;  3O3M B;  4EZW A;  3ER9 B;  4HR1 B;  2PY6 A;  3O3O B;  4JNE A;  1O0W A;  3DPO A;  2NCZ A;  4H6I A;  4JL9 A;  3O3N B;  2GSL A;  5FLE X;  2YIB A;  4H6H A;  4EZO A;  4EZP A;  3DPP A;  3T47 A;  3QA8 A;  2ND1 A;  1SU8 A;  1RC5 A;  4KIK A;  2YI8 A;  1RC7 A;  5E84 A;  3ERC C;  3O2R B;  3QNJ A;  5FIG A;  3L3O M;  4JN4 A;  2EWF A;  3I39 X;  2YI9 A;  2EX3 B;  4JWC A;  4PO2 A;  1JQK A;  2GAF D;  1E1D A;  2NUF A;  3LMF A;  2QVW A;  2RT6 A;  1I4S A;  4JLC A;  4EZT A;  4EZS A;  2KHO A;  1OA1 A;  1DKY A;  3RV1 A;  1E2U A;  3C4B A;  3T46 A;  4R5G A;  1YYO A;  2WIN M;  4JNF A;  4IM2 A;  3OWG A;  1SU6 A;  4HYB A;  3KAV A;  1OA0 A;  4EZZ A;  3C4T A;  4KIK B;  2QFF A;  1SU7 A;  4IM0 A;  4JWI A;  1E9V A;  4EZR A;  3ER8 C;  1MJG A;  3I04 A;  3N3W A;  3T48 A;  4R5L A;  4IWQ A;  2JNS A;  3B52 X;  3KAW A;  2FFL A;  4HY9 A;  1SUF A;  4OOG C;  1U00 A;  2ND0 A;  2Z8Y A;  3RV0 A;  4R5I A;  4FM3 A;  4EZV A;  4R5K A;  1JFZ A;  4M30 A;  2YIV X;  3GI7 A;  1YZ9 A;  4UDX X;  3A98 A;  4E3C A;  4F01 A;  3C7N A;  4R5J A;  4OUN A;  2EZ6 A;  3B51 X;  3DPQ A;  4F00 A;  3ZED A;  4JWD A;  1YYK A;  2OBL A;  1OAO A;  3KDR A;  4IW0 A;  1DKX A;  4JWE A;  4EZX A;  1UPX A;  1GNT A;  4D8J A;  4HR1 A;  2NUG A;  1W9M A;  1U61 A;  3OHX M;  2GA9 D;  1ZYL A;  3D2F A;  4IWP A;  4M0M A;  3T4A G;  4EZU A;  2YIA A;  4M2Z A;  3D2E A;  2EB1 A;  3VEB A; 
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