3RV0A

Crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
246
structure length
239
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Vanderwaltozyma polyspora
molecule keywords K. polysporus Dcr1
total genus 81
structure length 239
sequence length 246
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00035 dsrm Double-stranded RNA binding motif
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv0A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv0A01
2EB1A 1YYOA 1YYWA 2NUEA 1JFZA 1I4SA 3O2RB 1YYKA 2NUFA 4M2ZA 1YZ9A 1RC7A 3RV1A 3C4BA 1O0WA 2NUGA 1RC5A 2A11A 4OUNA 1U61A 3C4TA 3RV0A 4M30A 3O2RA 4OOGC 2EZ6A 2GSLA 3N3WA 2FFLA 2QVWA
chains in the Genus database with same CATH superfamily
2D1LA 3Q0KA 3Q84A 2O0I1 4M2ZA 2QFFA 3DPPA 3I01A 2F1AA 3ER8C 4IWQA 1O0WA 1OA0A 2F7PA 4AZ5A 4M30A 5E84A 3BUQA 4JNEA 2GSLA 4NSWA 2FFLA 2EB1A 4AVMA 1Y2OA 3T46A 3O3OB 3FD9A 2OBMA 1TQSA 3KDRA 3DX2A 3ABHA 1DKYA 3D2FA 3I04A 2WINM 4JLCA 4IM3A 4OUNA 3B51X 3QWEA 2D4CA 3DX4A 3LLLA 1TQWA 1DKZA 4R5GA 1WDZA 2YLLA 1E2UA 3EJSA 4AZCB 2Z0NA 3DDGA 4R5KA 1I4DA 4JN4A 3DPQA 4R5IA 1UPXA 3ER9B 3LMFA 2OW6A 4ATMA 4AZGA 4EZQA 2QXLA 2X3VA 2Z0VA 1TQTA 1E1DA 2KHOA 1R34A 3B52X 2OO2A 4HYBA 1R5EA 1I4SA 4JL9A 4EZVA 3T4AG 2FICA 3D2EA 4KIKB 1HWWA 2ND0A 3ACOA 3A98A 4AKVA 1U61A 4EZRA 1ZYLA 2YIAA 5C5BB 4AZBA 2YL8A 2YL5A 2YL6A 4EZOA 4FZOA 3BVVA 4DYLA 4E3CA 5FLEX 3D50A 2F18A 1LQ7A 2YLAA 1TQUA 2RAKA 4AZCA 1QX1A 2QVWA 1YYOA 4EZZA 3CV5A 2NUEA 2LXYA 1YYKA 2LM0A 3EJRA 2C08A 4FZPA 1X03A 3QE6A 4NPHA 3PLTA 3EJUA 3D4YA 1QWUA 2X5CA 3O3NB 4EZWA 2Z0OA 1E9VA 3I39X 2EWFA 3CZSA 3HAIA 4F00A 4UDYX 4HR1B 2WYIA 1O7DC 1RC7A 3O3MB 1SU8A 3BVTA 3ERCC 3I2WA 4EZTA 1W9MA 2V0OA 1RC5A 5C5BA 4OOGC 1GN9A 3BUDA 2YI9A 4I1QA 2OZNB 3O2RB 4IWOA 4WPCA 1QWNA 3D4ZA 5FIGA 1SU6A 4AZ6A 3T49A 2X3WA 2F7OA 2FYVA 3C4BA 4E81A 1R33A 3BVXA 1TQVA 3BUPA 4WPEA 2EFLA 4AZHA 4JWIA 3VEBA 3BLBA 3DYTA 4AZ7A 3GI7A 1YZ9A 1GNTA 2GA9D 2RAIA 4FZSA 3RV1A 4EZYA 2YIBA 4M0MA 4IWPA 3CAZA 2ND1A 3KAVA 1SUFA 3RPMA 3ZEDA 1OA1A 2RAJA 1X04A 4B9QA 3T47A 1JFZA 3D51A 4G6QA 4F01A 3OK8A 4AZIA 3B53X 1JQKA 2YKTA 4EZXA 2YIVX 2ALWA 3VKHA 3G9GA 3QNJA 3BUBA 4DCNC 3BVUA 1I4TA 2EFKA 3DX0A 2RT6A 2YI8A 1ZTDA 3UITA 3QNIA 4H8SA 4EZSA 4D8JA 4H6IA 1ZWWA 4R5JA 3EJPA 3SOGA 4IW0A 2EZ6A 1URUA 3F7WA 2EX3B 4KIKA 1GNLA 4JWCA 4NQIA 4HY9A 3C7NA 1HTYA 2ZXQA 2GF4A 3CZNA 4UDXX 3RV0A 2GAFD 4IM0A 3CKDA 3BVWA 2Z8YA 3QA8A 3EJTA 2F7RA 4FM3A 1U00A 3HAJA 5KBPA 2NUGA 3T48A 2OW7A 2YL9A 3BUIA 2N3KA 1O7DB 5TKYA 3L3OM 1DKXA 1YYWA 3OHXM 4JNFA 1HXKA 1OAOA 3DX3A 2OBLA 4EZPA 2JNSA 3KAWA 3OWGA 2F1BA 3CVRA 4HR1A 2NCZA 2F7QA 2PMRA 3VEAA 3C4TA 3N3WA 3SYVA 3DDFA 3LVTA 3L3PA 2Q12A 4H6HA 2MI7A 2QKWA 4R5LA 1I4LA 3EJQA 1SU7A 2A11A 4EZNA 2X3XA 4IM2A 4EZUA 3O2RA 3HAHA 2Q13A 4BNEA 3M3WA 2NUFA 2PY6A 2WYHA 4PO2A 2JNKA 3DPOA 3D52A 1MJGA 4JWEA 1PS3A 1I49A 3DX1A 2ELBA 4JWDA 1YWMA
chains in the Genus database with same CATH topology
3GI7A 2YIAA 2Z8YA 3QA8A 4M2ZA 1YZ9A 2QFFA 3DPPA 3I01A 1GNTA 4EZOA 4FM3A 1U00A 2GA9D 3ER8C 4IWQA 3RV1A 4EZYA 1O0WA 2NUGA 3T48A 1OA0A 4E3CA 2YIBA 4M0MA 4IWPA 5FLEX 2ND1A 3KAVA 2N3KA 4M30A 5TKYA 5E84A 1SUFA 4JNEA 3L3OM 2GSLA 3ZEDA 2FFLA 2QVWA 1DKXA 2EB1A 1OA1A 1YYOA 1YYWA 3OHXM 4B9QA 4EZZA 3T47A 2NUEA 1JFZA 4JNFA 3T46A 1YYKA 4G6QA 2LM0A 3O3OB 4F01A 3FD9A 1OAOA 2OBMA 3KDRA 3B53X 2OBLA 4EZPA 1DKYA 3D2FA 1JQKA 3I04A 2WINM 4JLCA 4NPHA 4EZXA 2JNSA 3KAWA 2YIVX 3OWGA 4IM3A 4OUNA 2X5CA 3B51X 3VKHA 4JWDA 4HR1A 3O3NB 4EZWA 2NCZA 1E9VA 3VEAA 3C4TA 3N3WA 3I39X 2EWFA 3QNJA 4R5GA 1DKZA 4UDYX 4F00A 4HR1B 4H6HA 1E2UA 2RT6A 1RC7A 4R5KA 2YI8A 3O3MB 3UITA 1SU8A 4R5LA 3ERCC 4EZSA 4JN4A 3DPQA 4R5IA 4D8JA 4H6IA 4EZTA 1W9MA 1UPXA 3ER9B 4R5JA 1SU7A 1RC5A 2A11A 3LMFA 4EZNA 4EZQA 4IM2A 4EZUA 3O2RA 2QXLA 4IW0A 4OOGC 2EZ6A 3F7WA 1E1DA 1GN9A 2KHOA 3B52X 4HYBA 2YI9A 2EX3B 1I4SA 3O2RB 4IWOA 4KIKA 2NUFA 2PY6A 4JL9A 1GNLA 4JWCA 4EZVA 4PO2A 5FIGA 1SU6A 3DPOA 4HY9A 3T4AG 3T49A 3D2EA 3C7NA 4KIKB 1MJGA 2ND0A 3C4BA 4JWEA 3A98A 4E81A 4UDXX 4EZRA 1U61A 3RV0A 2GAFD 4JWIA 3VEBA 4IM0A 1ZYLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EB1 A;  1YYO A;  1YYW A;  2NUE A;  1JFZ A;  1I4S A;  3O2R B;  1YYK A;  2NUF A;  4M2Z A;  1YZ9 A;  1RC7 A;  3RV1 A;  3C4B A;  1O0W A;  2NUG A;  1RC5 A;  2A11 A;  4OUN A;  1U61 A;  3C4T A;  3RV0 A;  4M30 A;  3O2R A;  4OOG C;  2EZ6 A;  2GSL A;  3N3W A;  2FFL A;  2QVW A; 
#chains in the Genus database with same CATH topology
 2D1L A;  3Q0K A;  3Q84 A;  2O0I 1;  4M2Z A;  2QFF A;  3DPP A;  3I01 A;  2F1A A;  3ER8 C;  4IWQ A;  1O0W A;  1OA0 A;  2F7P A;  4AZ5 A;  4M30 A;  5E84 A;  3BUQ A;  4JNE A;  2GSL A;  4NSW A;  2FFL A;  2EB1 A;  4AVM A;  1Y2O A;  3T46 A;  3O3O B;  3FD9 A;  2OBM A;  1TQS A;  3KDR A;  3DX2 A;  3ABH A;  1DKY A;  3D2F A;  3I04 A;  2WIN M;  4JLC A;  4IM3 A;  4OUN A;  3B51 X;  3QWE A;  2D4C A;  3DX4 A;  3LLL A;  1TQW A;  1DKZ A;  4R5G A;  1WDZ A;  2YLL A;  1E2U A;  3EJS A;  4AZC B;  2Z0N A;  3DDG A;  4R5K A;  1I4D A;  4JN4 A;  3DPQ A;  4R5I A;  1UPX A;  3ER9 B;  3LMF A;  2OW6 A;  4ATM A;  4AZG A;  4EZQ A;  2QXL A;  2X3V A;  2Z0V A;  1TQT A;  1E1D A;  2KHO A;  1R34 A;  3B52 X;  2OO2 A;  4HYB A;  1R5E A;  1I4S A;  4JL9 A;  4EZV A;  3T4A G;  2FIC A;  3D2E A;  4KIK B;  1HWW A;  2ND0 A;  3ACO A;  3A98 A;  4AKV A;  1U61 A;  4EZR A;  1ZYL A;  2YIA A;  5C5B B;  4AZB A;  2YL8 A;  2YL5 A;  2YL6 A;  4EZO A;  4FZO A;  3BVV A;  4DYL A;  4E3C A;  5FLE X;  3D50 A;  2F18 A;  1LQ7 A;  2YLA A;  1TQU A;  2RAK A;  4AZC A;  1QX1 A;  2QVW A;  1YYO A;  4EZZ A;  3CV5 A;  2NUE A;  2LXY A;  1YYK A;  2LM0 A;  3EJR A;  2C08 A;  4FZP A;  1X03 A;  3QE6 A;  4NPH A;  3PLT A;  3EJU A;  3D4Y A;  1QWU A;  2X5C A;  3O3N B;  4EZW A;  2Z0O A;  1E9V A;  3I39 X;  2EWF A;  3CZS A;  3HAI A;  4F00 A;  4UDY X;  4HR1 B;  2WYI A;  1O7D C;  1RC7 A;  3O3M B;  1SU8 A;  3BVT A;  3ERC C;  3I2W A;  4EZT A;  1W9M A;  2V0O A;  1RC5 A;  5C5B A;  4OOG C;  1GN9 A;  3BUD A;  2YI9 A;  4I1Q A;  2OZN B;  3O2R B;  4IWO A;  4WPC A;  1QWN A;  3D4Z A;  5FIG A;  1SU6 A;  4AZ6 A;  3T49 A;  2X3W A;  2F7O A;  2FYV A;  3C4B A;  4E81 A;  1R33 A;  3BVX A;  1TQV A;  3BUP A;  4WPE A;  2EFL A;  4AZH A;  4JWI A;  3VEB A;  3BLB A;  3DYT A;  4AZ7 A;  3GI7 A;  1YZ9 A;  1GNT A;  2GA9 D;  2RAI A;  4FZS A;  3RV1 A;  4EZY A;  2YIB A;  4M0M A;  4IWP A;  3CAZ A;  2ND1 A;  3KAV A;  1SUF A;  3RPM A;  3ZED A;  1OA1 A;  2RAJ A;  1X04 A;  4B9Q A;  3T47 A;  1JFZ A;  3D51 A;  4G6Q A;  4F01 A;  3OK8 A;  4AZI A;  3B53 X;  1JQK A;  2YKT A;  4EZX A;  2YIV X;  2ALW A;  3VKH A;  3G9G A;  3QNJ A;  3BUB A;  4DCN C;  3BVU A;  1I4T A;  2EFK A;  3DX0 A;  2RT6 A;  2YI8 A;  1ZTD A;  3UIT A;  3QNI A;  4H8S A;  4EZS A;  4D8J A;  4H6I A;  1ZWW A;  4R5J A;  3EJP A;  3SOG A;  4IW0 A;  2EZ6 A;  1URU A;  3F7W A;  2EX3 B;  4KIK A;  1GNL A;  4JWC A;  4NQI A;  4HY9 A;  3C7N A;  1HTY A;  2ZXQ A;  2GF4 A;  3CZN A;  4UDX X;  3RV0 A;  2GAF D;  4IM0 A;  3CKD A;  3BVW A;  2Z8Y A;  3QA8 A;  3EJT A;  2F7R A;  4FM3 A;  1U00 A;  3HAJ A;  5KBP A;  2NUG A;  3T48 A;  2OW7 A;  2YL9 A;  3BUI A;  2N3K A;  1O7D B;  5TKY A;  3L3O M;  1DKX A;  1YYW A;  3OHX M;  4JNF A;  1HXK A;  1OAO A;  3DX3 A;  2OBL A;  4EZP A;  2JNS A;  3KAW A;  3OWG A;  2F1B A;  3CVR A;  4HR1 A;  2NCZ A;  2F7Q A;  2PMR A;  3VEA A;  3C4T A;  3N3W A;  3SYV A;  3DDF A;  3LVT A;  3L3P A;  2Q12 A;  4H6H A;  2MI7 A;  2QKW A;  4R5L A;  1I4L A;  3EJQ A;  1SU7 A;  2A11 A;  4EZN A;  2X3X A;  4IM2 A;  4EZU A;  3O2R A;  3HAH A;  2Q13 A;  4BNE A;  3M3W A;  2NUF A;  2PY6 A;  2WYH A;  4PO2 A;  2JNK A;  3DPO A;  3D52 A;  1MJG A;  4JWE A;  1PS3 A;  1I49 A;  3DX1 A;  2ELB A;  4JWD A;  1YWM A; 
#chains in the Genus database with same CATH homology
 3GI7 A;  2YIA A;  2Z8Y A;  3QA8 A;  4M2Z A;  1YZ9 A;  2QFF A;  3DPP A;  3I01 A;  1GNT A;  4EZO A;  4FM3 A;  1U00 A;  2GA9 D;  3ER8 C;  4IWQ A;  3RV1 A;  4EZY A;  1O0W A;  2NUG A;  3T48 A;  1OA0 A;  4E3C A;  2YIB A;  4M0M A;  4IWP A;  5FLE X;  2ND1 A;  3KAV A;  2N3K A;  4M30 A;  5TKY A;  5E84 A;  1SUF A;  4JNE A;  3L3O M;  2GSL A;  3ZED A;  2FFL A;  2QVW A;  1DKX A;  2EB1 A;  1OA1 A;  1YYO A;  1YYW A;  3OHX M;  4B9Q A;  4EZZ A;  3T47 A;  2NUE A;  1JFZ A;  4JNF A;  3T46 A;  1YYK A;  4G6Q A;  2LM0 A;  3O3O B;  4F01 A;  3FD9 A;  1OAO A;  2OBM A;  3KDR A;  3B53 X;  2OBL A;  4EZP A;  1DKY A;  3D2F A;  1JQK A;  3I04 A;  2WIN M;  4JLC A;  4NPH A;  4EZX A;  2JNS A;  3KAW A;  2YIV X;  3OWG A;  4IM3 A;  4OUN A;  2X5C A;  3B51 X;  3VKH A;  4JWD A;  4HR1 A;  3O3N B;  4EZW A;  2NCZ A;  1E9V A;  3VEA A;  3C4T A;  3N3W A;  3I39 X;  2EWF A;  3QNJ A;  4R5G A;  1DKZ A;  4UDY X;  4F00 A;  4HR1 B;  4H6H A;  1E2U A;  2RT6 A;  1RC7 A;  4R5K A;  2YI8 A;  3O3M B;  3UIT A;  1SU8 A;  4R5L A;  3ERC C;  4EZS A;  4JN4 A;  3DPQ A;  4R5I A;  4D8J A;  4H6I A;  4EZT A;  1W9M A;  1UPX A;  3ER9 B;  4R5J A;  1SU7 A;  1RC5 A;  2A11 A;  3LMF A;  4EZN A;  4EZQ A;  4IM2 A;  4EZU A;  3O2R A;  2QXL A;  4IW0 A;  4OOG C;  2EZ6 A;  3F7W A;  1E1D A;  1GN9 A;  2KHO A;  3B52 X;  4HYB A;  2YI9 A;  2EX3 B;  1I4S A;  3O2R B;  4IWO A;  4KIK A;  2NUF A;  2PY6 A;  4JL9 A;  1GNL A;  4JWC A;  4EZV A;  4PO2 A;  5FIG A;  1SU6 A;  3DPO A;  4HY9 A;  3T4A G;  3T49 A;  3D2E A;  3C7N A;  4KIK B;  1MJG A;  2ND0 A;  3C4B A;  4JWE A;  3A98 A;  4E81 A;  4UDX X;  4EZR A;  1U61 A;  3RV0 A;  2GAF D;  4JWI A;  3VEB A;  4IM0 A;  1ZYL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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