3RV1A

Crystal structure of the n-terminal and rnase iii domains of k. polysporus dcr1 e224q mutant
Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
242
structure length
217
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIAKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH4 (86-93)EMPTYTI5 (80-83)AH1 (15-42)AH3 (69-80)TIV1 (47-50)TI1 (43-46)TI2 (44-47)TI3 (50-53)TIV2 (53-56)TIV3 (54-57)TI4 (55-58)AH2 (60-67)TI6 (96-99)TI7 (100-103)3H1 (103-105)AH8 (184-194)AH7 (171-182)AH6 (143-165)AH9 (196-200)TI8 (166-169)TIV5 (201-204)AH5 (114-120)Updating...
connected with : NaN
molecule tags Rna binding protein
source organism Vanderwaltozyma polyspora
publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
molecule keywords K. polysporus Dcr1
total genus 79
structure length 217
sequence length 242
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv1A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv1A01
1YYWA 3O2RB 3RV1A 2EZ6A 2A11A 4OOGC 1U61A 1YYKA 3O2RA 2QVWA 3N3WA 2GSLA 2FFLA 3C4BA 1I4SA 1YZ9A 2NUGA 1JFZA 2NUFA 2EB1A 1O0WA 4M2ZA 1YYOA 3RV0A 4OUNA 1RC5A 4M30A 3C4TA 2NUEA 1RC7A
chains in the Genus database with same CATH superfamily
4DCNC 2QXLA 4JL9A 2A11A 4EZVA 3O2RA 3CAZA 4EZZA 4JLCA 1SUFA 2YKTA 3PLTA 1I49A 3T48A 3G9GA 4IM3A 2F7PA 2X3XA 3BVXA 1X04A 3DX4A 3OK8A 3B51X 4HYBA 2OW6A 4EZPA 3I39X 2YIVX 4EZQA 1LQ7A 4EZRA 1I4TA 4IWOA 2D4CA 3D50A 1GNTA 3LMFA 1TQSA 2Z0NA 4NQIA 2Z0VA 4EZSA 2JNKA 3QNIA 3DDGA 1PS3A 3SOGA 3UITA 1U61A 2EX3B 2O0I1 1SU6A 3EJSA 3B52X 1WDZA 2FFLA 4AZ6A 3EJRA 3D4ZA 4H6HA 1YYOA 1E2UA 1UPXA 2WINM 4R5JA 3BUQA 1MJGA 3CZSA 4HR1B 2RT6A 4IM2A 2YLAA 3RPMA 2EFKA 4AVMA 4F01A 4M2ZA 1I4LA 4OUNA 1O7DC 2C08A 3A98A 3QA8A 4OOGC 4HR1A 3O3MB 3D52A 3N3WA 1QX1A 3CKDA 3BUBA 3KAWA 4AZBA 1O0WA 2EWFA 4G6QA 4NSWA 2YL9A 2Z0OA 1OAOA 4JWDA 2YIBA 1OA1A 2YIAA 2Q12A 3O3NB 4JN4A 3I01A 3C7NA 1YWMA 3D2EA 3ERCC 3DPQA 2NCZA 2OBLA 3C4BA 1DKZA 4IWQA 1R34A 2WYHA 1R5EA 2OZNB 4M30A 3I04A 1RC7A 2YI9A 2QKWA 4JWEA 1JQKA 3DX2A 3EJTA 4WPEA 4EZOA 4H8SA 2JNSA 3D51A 2F1BA 4E3CA 4NPHA 4JNFA 2PY6A 3RV0A 2ELBA 3VKHA 1TQVA 2D1LA 3T49A 2EZ6A 2F1AA 3OHXM 4EZNA 4FZSA 2ND1A 2GA9D 4ATMA 1E9VA 2RAKA 4DYLA 3DDFA 4UDYX 3BUPA 4HY9A 1Y2OA 3ZEDA 5KBPA 3Q84A 5C5BB 3DPOA 3M3WA 4R5LA 2OW7A 2Z8YA 1SU7A 4M0MA 1GNLA 2F7OA 3HAIA 2GSLA 2FICA 3BUIA 2MI7A 5FIGA 1U00A 4EZTA 2EB1A 1OA0A 3QNJA 1I4DA 1ZTDA 2NUEA 3C4TA 1QWNA 2YL6A 4JWCA 1ZWWA 2FYVA 4AZCB 2RAJA 4R5KA 1GN9A 5C5BA 2WYIA 2ND0A 3B53X 4R5IA 4FZOA 4R5GA 4FM3A 3O3OB 3ABHA 4I1QA 3HAHA 4AZHA 2X5CA 1YZ9A 3CVRA 2YI8A 3GI7A 3DX3A 3KDRA 3ER8C 3BVWA 1TQWA 3F7WA 3SYVA 4AZCA 2YL8A 3EJPA 4AKVA 3EJQA 3CZNA 1HTYA 4AZIA 1RC5A 4FZPA 3D4YA 4AZ5A 4PO2A 4JWIA 3Q0KA 2Q13A 3T47A 3BLBA 3L3OM 3EJUA 3DPPA 3KAVA 2OBMA 5TKYA 4KIKB 1HXKA 3HAJA 3LVTA 2QFFA 3VEAA 2X3VA 3BVUA 1ZYLA 1W9MA 4IWPA 1R33A 2V0OA 3I2WA 3BUDA 3T4AG 4AZ7A 2N3KA 4D8JA 1HWWA 3VEBA 4EZXA 5E84A 4KIKA 1YYWA 1QWUA 3QE6A 3RV1A 3CV5A 1TQUA 4IW0A 4H6IA 3DX0A 4UDXX 3QWEA 4EZYA 2LXYA 2OO2A 4F00A 4WPCA 5FLEX 4BNEA 1TQTA 4EZUA 3DX1A 1X03A 4JNEA 3ER9B 2ALWA 2X3WA 4AZGA 2F7RA 2NUGA 1JFZA 2PMRA 3T46A 3BVVA 3LLLA 2GF4A 2RAIA 2NUFA 3DYTA 3D2FA 2F7QA 3O2RB 2YL5A 2EFLA 2YLLA 1URUA 2KHOA 1DKXA 1YYKA 2F18A 1E1DA 2QVWA 3BVTA 4EZWA 1I4SA 2ZXQA 1DKYA 1O7DB 4B9QA 2GAFD 3L3PA 4IM0A 1SU8A 3ACOA 3FD9A 4E81A 2LM0A 3OWGA
chains in the Genus database with same CATH topology
1ZYLA 2QXLA 3DPOA 4JL9A 2A11A 4OOGC 4R5LA 4EZVA 3O2RA 2Z8YA 1SU7A 4M0MA 4EZZA 1GNLA 4HR1A 3O3MB 3N3WA 2GSLA 4JLCA 1W9MA 4IWPA 1SUFA 5FIGA 1U00A 3T4AG 4EZTA 2EB1A 2N3KA 3T48A 3ERCC 1OA0A 3QNJA 3KAWA 4D8JA 1O0WA 2EWFA 4G6QA 4IM3A 3VEBA 1OAOA 4EZXA 2NUEA 3C4TA 4JWDA 5E84A 4KIKA 1YYWA 2YIBA 1OA1A 2YIAA 3RV1A 4JWCA 3O3NB 3B51X 4HYBA 1GN9A 4R5KA 4JN4A 3I01A 2ND0A 4IW0A 4EZPA 3B53X 3C7NA 2YIVX 3D2EA 3I39X 4FM3A 4H6IA 3O3OB 3DPQA 4R5GA 4R5IA 2NCZA 2OBLA 4UDXX 4EZYA 4EZRA 3C4BA 1DKZA 4IWOA 2X5CA 1YZ9A 4F00A 4IWQA 5FLEX 1GNTA 2YI8A 3GI7A 3LMFA 3KDRA 3ER8C 4EZUA 4M30A 3I04A 4EZSA 1RC7A 2YI9A 4JWEA 4EZQA 4JNEA 3F7WA 3ER9B 1JQKA 3UITA 1U61A 2EX3B 4EZOA 2JNSA 1SU6A 3B52X 2FFLA 2NUGA 1JFZA 3T46A 3VEAA 4E3CA 4H6HA 4NPHA 4JNFA 2PY6A 1YYOA 3RV0A 3VKHA 1E2UA 1UPXA 2WINM 1RC5A 2NUFA 3D2FA 4R5JA 3O2RB 3T49A 1MJGA 4PO2A 2EZ6A 4HR1B 2RT6A 4JWIA 4IM2A 2KHOA 1DKXA 1YYKA 3OHXM 4EZNA 1E1DA 2QVWA 2ND1A 2GA9D 3T47A 4EZWA 1I4SA 3L3OM 1E9VA 3DPPA 3KAVA 4F01A 1DKYA 2OBMA 4M2ZA 4UDYX 2GAFD 5TKYA 4B9QA 4KIKB 4IM0A 1SU8A 3FD9A 4OUNA 4HY9A 4E81A 2LM0A 3OWGA 2QFFA 3A98A 3ZEDA 3QA8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YYW A;  3O2R B;  3RV1 A;  2EZ6 A;  2A11 A;  4OOG C;  1U61 A;  1YYK A;  3O2R A;  2QVW A;  3N3W A;  2GSL A;  2FFL A;  3C4B A;  1I4S A;  1YZ9 A;  2NUG A;  1JFZ A;  2NUF A;  2EB1 A;  1O0W A;  4M2Z A;  1YYO A;  3RV0 A;  4OUN A;  1RC5 A;  4M30 A;  3C4T A;  2NUE A;  1RC7 A; 
#chains in the Genus database with same CATH topology
 4DCN C;  2QXL A;  4JL9 A;  2A11 A;  4EZV A;  3O2R A;  3CAZ A;  4EZZ A;  4JLC A;  1SUF A;  2YKT A;  3PLT A;  1I49 A;  3T48 A;  3G9G A;  4IM3 A;  2F7P A;  2X3X A;  3BVX A;  1X04 A;  3DX4 A;  3OK8 A;  3B51 X;  4HYB A;  2OW6 A;  4EZP A;  3I39 X;  2YIV X;  4EZQ A;  1LQ7 A;  4EZR A;  1I4T A;  4IWO A;  2D4C A;  3D50 A;  1GNT A;  3LMF A;  1TQS A;  2Z0N A;  4NQI A;  2Z0V A;  4EZS A;  2JNK A;  3QNI A;  3DDG A;  1PS3 A;  3SOG A;  3UIT A;  1U61 A;  2EX3 B;  2O0I 1;  1SU6 A;  3EJS A;  3B52 X;  1WDZ A;  2FFL A;  4AZ6 A;  3EJR A;  3D4Z A;  4H6H A;  1YYO A;  1E2U A;  1UPX A;  2WIN M;  4R5J A;  3BUQ A;  1MJG A;  3CZS A;  4HR1 B;  2RT6 A;  4IM2 A;  2YLA A;  3RPM A;  2EFK A;  4AVM A;  4F01 A;  4M2Z A;  1I4L A;  4OUN A;  1O7D C;  2C08 A;  3A98 A;  3QA8 A;  4OOG C;  4HR1 A;  3O3M B;  3D52 A;  3N3W A;  1QX1 A;  3CKD A;  3BUB A;  3KAW A;  4AZB A;  1O0W A;  2EWF A;  4G6Q A;  4NSW A;  2YL9 A;  2Z0O A;  1OAO A;  4JWD A;  2YIB A;  1OA1 A;  2YIA A;  2Q12 A;  3O3N B;  4JN4 A;  3I01 A;  3C7N A;  1YWM A;  3D2E A;  3ERC C;  3DPQ A;  2NCZ A;  2OBL A;  3C4B A;  1DKZ A;  4IWQ A;  1R34 A;  2WYH A;  1R5E A;  2OZN B;  4M30 A;  3I04 A;  1RC7 A;  2YI9 A;  2QKW A;  4JWE A;  1JQK A;  3DX2 A;  3EJT A;  4WPE A;  4EZO A;  4H8S A;  2JNS A;  3D51 A;  2F1B A;  4E3C A;  4NPH A;  4JNF A;  2PY6 A;  3RV0 A;  2ELB A;  3VKH A;  1TQV A;  2D1L A;  3T49 A;  2EZ6 A;  2F1A A;  3OHX M;  4EZN A;  4FZS A;  2ND1 A;  2GA9 D;  4ATM A;  1E9V A;  2RAK A;  4DYL A;  3DDF A;  4UDY X;  3BUP A;  4HY9 A;  1Y2O A;  3ZED A;  5KBP A;  3Q84 A;  5C5B B;  3DPO A;  3M3W A;  4R5L A;  2OW7 A;  2Z8Y A;  1SU7 A;  4M0M A;  1GNL A;  2F7O A;  3HAI A;  2GSL A;  2FIC A;  3BUI A;  2MI7 A;  5FIG A;  1U00 A;  4EZT A;  2EB1 A;  1OA0 A;  3QNJ A;  1I4D A;  1ZTD A;  2NUE A;  3C4T A;  1QWN A;  2YL6 A;  4JWC A;  1ZWW A;  2FYV A;  4AZC B;  2RAJ A;  4R5K A;  1GN9 A;  5C5B A;  2WYI A;  2ND0 A;  3B53 X;  4R5I A;  4FZO A;  4R5G A;  4FM3 A;  3O3O B;  3ABH A;  4I1Q A;  3HAH A;  4AZH A;  2X5C A;  1YZ9 A;  3CVR A;  2YI8 A;  3GI7 A;  3DX3 A;  3KDR A;  3ER8 C;  3BVW A;  1TQW A;  3F7W A;  3SYV A;  4AZC A;  2YL8 A;  3EJP A;  4AKV A;  3EJQ A;  3CZN A;  1HTY A;  4AZI A;  1RC5 A;  4FZP A;  3D4Y A;  4AZ5 A;  4PO2 A;  4JWI A;  3Q0K A;  2Q13 A;  3T47 A;  3BLB A;  3L3O M;  3EJU A;  3DPP A;  3KAV A;  2OBM A;  5TKY A;  4KIK B;  1HXK A;  3HAJ A;  3LVT A;  2QFF A;  3VEA A;  2X3V A;  3BVU A;  1ZYL A;  1W9M A;  4IWP A;  1R33 A;  2V0O A;  3I2W A;  3BUD A;  3T4A G;  4AZ7 A;  2N3K A;  4D8J A;  1HWW A;  3VEB A;  4EZX A;  5E84 A;  4KIK A;  1YYW A;  1QWU A;  3QE6 A;  3RV1 A;  3CV5 A;  1TQU A;  4IW0 A;  4H6I A;  3DX0 A;  4UDX X;  3QWE A;  4EZY A;  2LXY A;  2OO2 A;  4F00 A;  4WPC A;  5FLE X;  4BNE A;  1TQT A;  4EZU A;  3DX1 A;  1X03 A;  4JNE A;  3ER9 B;  2ALW A;  2X3W A;  4AZG A;  2F7R A;  2NUG A;  1JFZ A;  2PMR A;  3T46 A;  3BVV A;  3LLL A;  2GF4 A;  2RAI A;  2NUF A;  3DYT A;  3D2F A;  2F7Q A;  3O2R B;  2YL5 A;  2EFL A;  2YLL A;  1URU A;  2KHO A;  1DKX A;  1YYK A;  2F18 A;  1E1D A;  2QVW A;  3BVT A;  4EZW A;  1I4S A;  2ZXQ A;  1DKY A;  1O7D B;  4B9Q A;  2GAF D;  3L3P A;  4IM0 A;  1SU8 A;  3ACO A;  3FD9 A;  4E81 A;  2LM0 A;  3OWG A; 
#chains in the Genus database with same CATH homology
 1ZYL A;  2QXL A;  3DPO A;  4JL9 A;  2A11 A;  4OOG C;  4R5L A;  4EZV A;  3O2R A;  2Z8Y A;  1SU7 A;  4M0M A;  4EZZ A;  1GNL A;  4HR1 A;  3O3M B;  3N3W A;  2GSL A;  4JLC A;  1W9M A;  4IWP A;  1SUF A;  5FIG A;  1U00 A;  3T4A G;  4EZT A;  2EB1 A;  2N3K A;  3T48 A;  3ERC C;  1OA0 A;  3QNJ A;  3KAW A;  4D8J A;  1O0W A;  2EWF A;  4G6Q A;  4IM3 A;  3VEB A;  1OAO A;  4EZX A;  2NUE A;  3C4T A;  4JWD A;  5E84 A;  4KIK A;  1YYW A;  2YIB A;  1OA1 A;  2YIA A;  3RV1 A;  4JWC A;  3O3N B;  3B51 X;  4HYB A;  1GN9 A;  4R5K A;  4JN4 A;  3I01 A;  2ND0 A;  4IW0 A;  4EZP A;  3B53 X;  3C7N A;  2YIV X;  3D2E A;  3I39 X;  4FM3 A;  4H6I A;  3O3O B;  3DPQ A;  4R5G A;  4R5I A;  2NCZ A;  2OBL A;  4UDX X;  4EZY A;  4EZR A;  3C4B A;  1DKZ A;  4IWO A;  2X5C A;  1YZ9 A;  4F00 A;  4IWQ A;  5FLE X;  1GNT A;  2YI8 A;  3GI7 A;  3LMF A;  3KDR A;  3ER8 C;  4EZU A;  4M30 A;  3I04 A;  4EZS A;  1RC7 A;  2YI9 A;  4JWE A;  4EZQ A;  4JNE A;  3F7W A;  3ER9 B;  1JQK A;  3UIT A;  1U61 A;  2EX3 B;  4EZO A;  2JNS A;  1SU6 A;  3B52 X;  2FFL A;  2NUG A;  1JFZ A;  3T46 A;  3VEA A;  4E3C A;  4H6H A;  4NPH A;  4JNF A;  2PY6 A;  1YYO A;  3RV0 A;  3VKH A;  1E2U A;  1UPX A;  2WIN M;  1RC5 A;  2NUF A;  3D2F A;  4R5J A;  3O2R B;  3T49 A;  1MJG A;  4PO2 A;  2EZ6 A;  4HR1 B;  2RT6 A;  4JWI A;  4IM2 A;  2KHO A;  1DKX A;  1YYK A;  3OHX M;  4EZN A;  1E1D A;  2QVW A;  2ND1 A;  2GA9 D;  3T47 A;  4EZW A;  1I4S A;  3L3O M;  1E9V A;  3DPP A;  3KAV A;  4F01 A;  1DKY A;  2OBM A;  4M2Z A;  4UDY X;  2GAF D;  5TKY A;  4B9Q A;  4KIK B;  4IM0 A;  1SU8 A;  3FD9 A;  4OUN A;  4HY9 A;  4E81 A;  2LM0 A;  3OWG A;  2QFF A;  3A98 A;  3ZED A;  3QA8 A; 
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