2RAIA

The px-bar membrane remodeling unit of sorting nexin 9
Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
382
structure length
363
Chain Sequence
PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (337-340)S1 (233-235)S2 (252-255)TVIII2 (246-249)TIV2 (276-279)TVIII3 (277-280)S4 (283-286)EMPTYTIV4 (321-324)TIV5 (322-325)AH3 (329-334)3H2 (344-346)AH4 (348-354)TIV1 (237-240)S3 (271-276)AH2 (287-302)TIV3 (302-305)TIV6 (323-327)AH1 (215-221)TIV7 (341-344)TVIII1 (228-231)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
molecule keywords Sorting nexin-9
total genus 118
structure length 363
sequence length 382
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2raiA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2raiA02
4HASA 2X3VA 2YKTA 4AZ9A 4I1QA 1I4LA 3HPCX 2L73A 2CZOA 2WWEA 2V6VA 4PQPA 4AKVA 4WPCA 1ZWWA 3IQ2A 4PQOA 2AR5A 4FZSA 2REAA 3SOGA 1XTNA 3LUIA 2CSKA 4ATMA 4ON3A 4OXWA 1KQ6A 4H8SA 2X3WA 3HPBA 1H6HA 2REDA 3LLLA 3ABHA 2V14A 3CAZA 5C5BB 2Z0OA 2I4KA 4AVMA 2C08A 2RAJA 3QE6A 3M3WA 3QWEA 2D4CA 4P2IA 3I2WA 2X3XA 1Y2OA 3ACOA 4DCNC 4PZGA 4IKBB 3SYVA 3HAHA 1OCUA 1I4TA 4BGJA 1GD5A 1KMDA 3HAIA 4IKBA 4IKDA 3QNIA 1O7KA 2ETTA 1X04A 3Q84A 3DYTA 5C5BA 2IWLX 1URUA 1WDZA 3P0CA 4WPEA 1I49A 2DYBA 4BNEA 2Z0NA 4P2JA 2FICA 1X03A 1XTEA 1OCSA 2EFLA 2Q12A 2RAKA 4NSWA 2V0OA 3Q0KA 2YPSA 2EFKA 3HAJA 4NQIA 1I4DA 3OK8A 3FOGA 3G9GA 2D1LA 2Z0VA 4DYLA 2RAIA 3PLTA 2ELBA 2Q13A
chains in the Genus database with same CATH superfamily
2X3VA 3EJPA 2YLLA 3D2FA 3BVVA 3DX4A 3O3OB 1U00A 2LM0A 2YIBA 4JLCA 5FIGA 4AKVA 4EZRA 4WPCA 3IQ2A 4R5IA 3RPMA 1E1DA 3RV0A 3SOGA 1GNLA 3D4YA 3D51A 1KQ6A 3F7WA 4H8SA 4JNFA 3CV5A 2QXLA 3HPBA 1H6HA 4HYBA 4H6HA 1QWNA 4F01A 3BUBA 1QWUA 4JL9A 3DPQA 2F7PA 4HY9A 2C08A 4FZPA 2GA9D 3M3WA 4JWIA 1OA0A 2OBLA 3ACOA 3DPPA 1TQSA 2YIAA 1SUFA 4R5JA 1O7DC 2F7QA 2NCZA 3EJTA 4IKDA 4EZUA 2GAFD 2YLAA 2RT6A 1DKYA 2ND0A 1O7KA 3BUQA 2WYHA 3DYTA 4IM0A 1TQUA 4IWPA 1R33A 4AZIA 1GN9A 4KIKB 1I49A 4BNEA 2Z0NA 3BUPA 2FICA 4G6QA 4AZ5A 1ZYLA 3O3NB 2Q12A 4R5LA 4NPHA 2V0OA 3Q0KA 3ER8C 1TQTA 1PS3A 3CVRA 4DYLA 1R5EA 2Q13A 4HASA 1GNTA 2OO2A 1HWWA 3BVUA 1I4LA 4KIKA 3T4AG 2L73A 2KHOA 2QKWA 4EZNA 2F7RA 4PQPA 3BVTA 2F1BA 4FZSA 3I01A 4EZVA 1JQKA 2EX3B 3LUIA 4FZOA 4ON3A 2X3WA 2LXYA 2REDA 3VKHA 2V14A 3DX0A 3RV1A 2YI9A 4E3CA 2I4KA 4EZQA 3BVXA 3B53X 4UDYX 4UDXX 3QE6A 3QWEA 2D4CA 3I2WA 3EJRA 2F7OA 2JNKA 2YIVX 4PZGA 4EZXA 3SYVA 1OCUA 5FLEX 4IKBA 4EZPA 4IW0A 3VEAA 4JWCA 2ETTA 2EWFA 2IWLX 2WINM 1WDZA 3KAVA 2GF4A 1HXKA 2DYBA 2F1AA 4JNEA 3D2EA 3EJUA 3BVWA 2EFLA 3D50A 4B9QA 3DPOA 4AZCA 4AZ6A 3HAJA 1OA1A 4EZYA 4NQIA 1E2UA 2D1LA 2Z0VA 2RAIA 5E84A 3KDRA 4AZHA 3CKDA 2YL9A 2YKTA 3OWGA 4EZTA 2JNSA 3LVTA 4AZ9A 2OW6A 2CZOA 4AZGA 2ZXQA 3CZNA 1QX1A 1ZWWA 2O0I1 1SU7A 1XTNA 2CSKA 4IWQA 3T48A 4OXWA 3QNJA 3I04A 2YL5A 4JWEA 3LLLA 3C7NA 3CZSA 4JN4A 1O7DB 3D4ZA 3EJSA 3FD9A 4FM3A 4AVMA 1TQVA 1R34A 4P2IA 2X3XA 3KAWA 5TKYA 3B52X 1HTYA 4D8JA 4IKBB 1UPXA 1I4TA 3L3OM 2PMRA 4EZOA 4BGJA 1GD5A 1KMDA 1LQ7A 3QNIA 4EZWA 3VEBA 3T49A 4IWOA 3Q84A 2OBMA 4EZSA 4WPEA 4P2JA 1X03A 4HR1A 2QFFA 4EZZA 3B51X 4AZCB 2YL6A 2RAKA 4NSWA 3LMFA 3ZEDA 5KBPA 3DX3A 2ND1A 3A98A 3PLTA 2YI8A 2OZNB 3OHXM 3DDFA 1DKZA 4I1QA 4R5GA 3GI7A 3BLBA 3BUIA 3HPCX 1SU6A 4JWDA 3T47A 2V6VA 2WWEA 4PQOA 2AR5A 4H6IA 2REAA 2FYVA 2Z8YA 2X5CA 4ATMA 4F00A 2F18A 3O3MB 4AZ7A 1MJGA 3ABHA 3DX1A 3CAZA 5C5BB 2Z0OA 2WYIA 4R5KA 2RAJA 3BUDA 3ERCC 3QA8A 1W9MA 1Y2OA 1OAOA 3T46A 4DCNC 2MI7A 4AZBA 3ER9B 3HAHA 3D52A 3HAIA 4PO2A 2ALWA 3I39X 1X04A 4HR1B 5C5BA 3UITA 1E9VA 3DDGA 1URUA 1YWMA 3P0CA 2PY6A 3DX2A 2OW7A 1TQWA 1XTEA 1OCSA 4IM2A 1SU8A 2YPSA 4M0MA 2EFKA 3EJQA 4IM3A 1I4DA 2YL8A 3L3PA 3OK8A 3FOGA 3G9GA 2N3KA 1DKXA 2ELBA 4E81A
chains in the Genus database with same CATH topology
4HASA 2X3VA 2YKTA 4AZ9A 4I1QA 1I4LA 3HPCX 2L73A 2CZOA 2WWEA 2V6VA 4PQPA 4AKVA 4WPCA 1ZWWA 3IQ2A 4PQOA 2AR5A 4FZSA 2REAA 3SOGA 1XTNA 3LUIA 2CSKA 4ATMA 4ON3A 4OXWA 1KQ6A 4H8SA 2X3WA 3HPBA 1H6HA 2REDA 3LLLA 3ABHA 2V14A 3CAZA 5C5BB 2Z0OA 2I4KA 4AVMA 2C08A 2RAJA 3QE6A 3M3WA 3QWEA 2D4CA 4P2IA 3I2WA 2X3XA 1Y2OA 3ACOA 4DCNC 4PZGA 4IKBB 3SYVA 3HAHA 1OCUA 1I4TA 4BGJA 1GD5A 1KMDA 3HAIA 4IKBA 4IKDA 3QNIA 1O7KA 2ETTA 1X04A 3Q84A 3DYTA 5C5BA 2IWLX 1URUA 1WDZA 3P0CA 4WPEA 1I49A 2DYBA 4BNEA 2Z0NA 4P2JA 2FICA 1X03A 1XTEA 1OCSA 2EFLA 2Q12A 2RAKA 4NSWA 2V0OA 3Q0KA 2YPSA 2EFKA 3HAJA 4NQIA 1I4DA 3OK8A 3FOGA 3G9GA 2D1LA 2Z0VA 4DYLA 2RAIA 3PLTA 2ELBA 2Q13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HAS A;  2X3V A;  2YKT A;  4AZ9 A;  4I1Q A;  1I4L A;  3HPC X;  2L73 A;  2CZO A;  2WWE A;  2V6V A;  4PQP A;  4AKV A;  4WPC A;  1ZWW A;  3IQ2 A;  4PQO A;  2AR5 A;  4FZS A;  2REA A;  3SOG A;  1XTN A;  3LUI A;  2CSK A;  4ATM A;  4ON3 A;  4OXW A;  1KQ6 A;  4H8S A;  2X3W A;  3HPB A;  1H6H A;  2RED A;  3LLL A;  3ABH A;  2V14 A;  3CAZ A;  5C5B B;  2Z0O A;  2I4K A;  4AVM A;  2C08 A;  2RAJ A;  3QE6 A;  3M3W A;  3QWE A;  2D4C A;  4P2I A;  3I2W A;  2X3X A;  1Y2O A;  3ACO A;  4DCN C;  4PZG A;  4IKB B;  3SYV A;  3HAH A;  1OCU A;  1I4T A;  4BGJ A;  1GD5 A;  1KMD A;  3HAI A;  4IKB A;  4IKD A;  3QNI A;  1O7K A;  2ETT A;  1X04 A;  3Q84 A;  3DYT A;  5C5B A;  2IWL X;  1URU A;  1WDZ A;  3P0C A;  4WPE A;  1I49 A;  2DYB A;  4BNE A;  2Z0N A;  4P2J A;  2FIC A;  1X03 A;  1XTE A;  1OCS A;  2EFL A;  2Q12 A;  2RAK A;  4NSW A;  2V0O A;  3Q0K A;  2YPS A;  2EFK A;  3HAJ A;  4NQI A;  1I4D A;  3OK8 A;  3FOG A;  3G9G A;  2D1L A;  2Z0V A;  4DYL A;  2RAI A;  3PLT A;  2ELB A;  2Q13 A; 
#chains in the Genus database with same CATH topology
 2X3V A;  3EJP A;  2YLL A;  3D2F A;  3BVV A;  3DX4 A;  3O3O B;  1U00 A;  2LM0 A;  2YIB A;  4JLC A;  5FIG A;  4AKV A;  4EZR A;  4WPC A;  3IQ2 A;  4R5I A;  3RPM A;  1E1D A;  3RV0 A;  3SOG A;  1GNL A;  3D4Y A;  3D51 A;  1KQ6 A;  3F7W A;  4H8S A;  4JNF A;  3CV5 A;  2QXL A;  3HPB A;  1H6H A;  4HYB A;  4H6H A;  1QWN A;  4F01 A;  3BUB A;  1QWU A;  4JL9 A;  3DPQ A;  2F7P A;  4HY9 A;  2C08 A;  4FZP A;  2GA9 D;  3M3W A;  4JWI A;  1OA0 A;  2OBL A;  3ACO A;  3DPP A;  1TQS A;  2YIA A;  1SUF A;  4R5J A;  1O7D C;  2F7Q A;  2NCZ A;  3EJT A;  4IKD A;  4EZU A;  2GAF D;  2YLA A;  2RT6 A;  1DKY A;  2ND0 A;  1O7K A;  3BUQ A;  2WYH A;  3DYT A;  4IM0 A;  1TQU A;  4IWP A;  1R33 A;  4AZI A;  1GN9 A;  4KIK B;  1I49 A;  4BNE A;  2Z0N A;  3BUP A;  2FIC A;  4G6Q A;  4AZ5 A;  1ZYL A;  3O3N B;  2Q12 A;  4R5L A;  4NPH A;  2V0O A;  3Q0K A;  3ER8 C;  1TQT A;  1PS3 A;  3CVR A;  4DYL A;  1R5E A;  2Q13 A;  4HAS A;  1GNT A;  2OO2 A;  1HWW A;  3BVU A;  1I4L A;  4KIK A;  3T4A G;  2L73 A;  2KHO A;  2QKW A;  4EZN A;  2F7R A;  4PQP A;  3BVT A;  2F1B A;  4FZS A;  3I01 A;  4EZV A;  1JQK A;  2EX3 B;  3LUI A;  4FZO A;  4ON3 A;  2X3W A;  2LXY A;  2RED A;  3VKH A;  2V14 A;  3DX0 A;  3RV1 A;  2YI9 A;  4E3C A;  2I4K A;  4EZQ A;  3BVX A;  3B53 X;  4UDY X;  4UDX X;  3QE6 A;  3QWE A;  2D4C A;  3I2W A;  3EJR A;  2F7O A;  2JNK A;  2YIV X;  4PZG A;  4EZX A;  3SYV A;  1OCU A;  5FLE X;  4IKB A;  4EZP A;  4IW0 A;  3VEA A;  4JWC A;  2ETT A;  2EWF A;  2IWL X;  2WIN M;  1WDZ A;  3KAV A;  2GF4 A;  1HXK A;  2DYB A;  2F1A A;  4JNE A;  3D2E A;  3EJU A;  3BVW A;  2EFL A;  3D50 A;  4B9Q A;  3DPO A;  4AZC A;  4AZ6 A;  3HAJ A;  1OA1 A;  4EZY A;  4NQI A;  1E2U A;  2D1L A;  2Z0V A;  2RAI A;  5E84 A;  3KDR A;  4AZH A;  3CKD A;  2YL9 A;  2YKT A;  3OWG A;  4EZT A;  2JNS A;  3LVT A;  4AZ9 A;  2OW6 A;  2CZO A;  4AZG A;  2ZXQ A;  3CZN A;  1QX1 A;  1ZWW A;  2O0I 1;  1SU7 A;  1XTN A;  2CSK A;  4IWQ A;  3T48 A;  4OXW A;  3QNJ A;  3I04 A;  2YL5 A;  4JWE A;  3LLL A;  3C7N A;  3CZS A;  4JN4 A;  1O7D B;  3D4Z A;  3EJS A;  3FD9 A;  4FM3 A;  4AVM A;  1TQV A;  1R34 A;  4P2I A;  2X3X A;  3KAW A;  5TKY A;  3B52 X;  1HTY A;  4D8J A;  4IKB B;  1UPX A;  1I4T A;  3L3O M;  2PMR A;  4EZO A;  4BGJ A;  1GD5 A;  1KMD A;  1LQ7 A;  3QNI A;  4EZW A;  3VEB A;  3T49 A;  4IWO A;  3Q84 A;  2OBM A;  4EZS A;  4WPE A;  4P2J A;  1X03 A;  4HR1 A;  2QFF A;  4EZZ A;  3B51 X;  4AZC B;  2YL6 A;  2RAK A;  4NSW A;  3LMF A;  3ZED A;  5KBP A;  3DX3 A;  2ND1 A;  3A98 A;  3PLT A;  2YI8 A;  2OZN B;  3OHX M;  3DDF A;  1DKZ A;  4I1Q A;  4R5G A;  3GI7 A;  3BLB A;  3BUI A;  3HPC X;  1SU6 A;  4JWD A;  3T47 A;  2V6V A;  2WWE A;  4PQO A;  2AR5 A;  4H6I A;  2REA A;  2FYV A;  2Z8Y A;  2X5C A;  4ATM A;  4F00 A;  2F18 A;  3O3M B;  4AZ7 A;  1MJG A;  3ABH A;  3DX1 A;  3CAZ A;  5C5B B;  2Z0O A;  2WYI A;  4R5K A;  2RAJ A;  3BUD A;  3ERC C;  3QA8 A;  1W9M A;  1Y2O A;  1OAO A;  3T46 A;  4DCN C;  2MI7 A;  4AZB A;  3ER9 B;  3HAH A;  3D52 A;  3HAI A;  4PO2 A;  2ALW A;  3I39 X;  1X04 A;  4HR1 B;  5C5B A;  3UIT A;  1E9V A;  3DDG A;  1URU A;  1YWM A;  3P0C A;  2PY6 A;  3DX2 A;  2OW7 A;  1TQW A;  1XTE A;  1OCS A;  4IM2 A;  1SU8 A;  2YPS A;  4M0M A;  2EFK A;  3EJQ A;  4IM3 A;  1I4D A;  2YL8 A;  3L3P A;  3OK8 A;  3FOG A;  3G9G A;  2N3K A;  1DKX A;  2ELB A;  4E81 A; 
#chains in the Genus database with same CATH homology
 4HAS A;  2X3V A;  2YKT A;  4AZ9 A;  4I1Q A;  1I4L A;  3HPC X;  2L73 A;  2CZO A;  2WWE A;  2V6V A;  4PQP A;  4AKV A;  4WPC A;  1ZWW A;  3IQ2 A;  4PQO A;  2AR5 A;  4FZS A;  2REA A;  3SOG A;  1XTN A;  3LUI A;  2CSK A;  4ATM A;  4ON3 A;  4OXW A;  1KQ6 A;  4H8S A;  2X3W A;  3HPB A;  1H6H A;  2RED A;  3LLL A;  3ABH A;  2V14 A;  3CAZ A;  5C5B B;  2Z0O A;  2I4K A;  4AVM A;  2C08 A;  2RAJ A;  3QE6 A;  3M3W A;  3QWE A;  2D4C A;  4P2I A;  3I2W A;  2X3X A;  1Y2O A;  3ACO A;  4DCN C;  4PZG A;  4IKB B;  3SYV A;  3HAH A;  1OCU A;  1I4T A;  4BGJ A;  1GD5 A;  1KMD A;  3HAI A;  4IKB A;  4IKD A;  3QNI A;  1O7K A;  2ETT A;  1X04 A;  3Q84 A;  3DYT A;  5C5B A;  2IWL X;  1URU A;  1WDZ A;  3P0C A;  4WPE A;  1I49 A;  2DYB A;  4BNE A;  2Z0N A;  4P2J A;  2FIC A;  1X03 A;  1XTE A;  1OCS A;  2EFL A;  2Q12 A;  2RAK A;  4NSW A;  2V0O A;  3Q0K A;  2YPS A;  2EFK A;  3HAJ A;  4NQI A;  1I4D A;  3OK8 A;  3FOG A;  3G9G A;  2D1L A;  2Z0V A;  4DYL A;  2RAI A;  3PLT A;  2ELB A;  2Q13 A; 
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