2RAJA

So4 bound px-bar membrane remodeling unit of sorting nexin 9
Total Genus 144
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
382
structure length
382
Chain Sequence
PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
5010015020025030035035030025020015010050
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (287-302)EMPTYS3 (252-260)TIV1 (228-231)S2 (240-242)TIV2 (237-240)AH5 (359-371)TIV4 (264-267)TIV5 (265-268)S4 (269-276)TI1 (277-280)S5 (283-286)TIV6 (276-279)AH4 (348-354)3H1 (344-346)AH3 (321-340)3H2 (376-382)TIV9 (341-344)AH1 (215-221)S1 (232-237)TVIII1 (246-249)TIV8 (315-318)TIV7 (302-305)TIV3 (261-264)TIV10 (372-375)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
molecule keywords Sorting nexin-9
total genus 144
structure length 382
sequence length 382
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2rajA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2rajA02
3SYVA 2D4CA 2L73A 2X3WA 3ACOA 4NSWA 1WDZA 3OK8A 2X3VA 1ZWWA 4WPCA 1I4DA 2V14A 2YKTA 2YPSA 2CSKA 4IKBA 3HAIA 4AKVA 4DCNC 2Z0NA 5C5BA 2C08A 1KQ6A 3PLTA 2EFLA 2REDA 2EFKA 2V0OA 4PQPA 3QNIA 1GD5A 4PQOA 2X3XA 4AVMA 2V6VA 1X03A 2Z0OA 3SOGA 2FICA 4FZSA 2AR5A 1KMDA 3I2WA 1O7KA 1I49A 4HASA 2WWEA 4I1QA 3HPBA 4BGJA 3QWEA 3ABHA 2DYBA 4IKDA 4NQIA 2I4KA 3Q0KA 3LLLA 4WPEA 2CZOA 3CAZA 2Q12A 4DYLA 3P0CA 1OCUA 1I4LA 3DYTA 4BNEA 2ETTA 1H6HA 4ON3A 2RAIA 4P2JA 3G9GA 2D1LA 1I4TA 3HAHA 3LUIA 3M3WA 1URUA 1OCSA 4OXWA 4PZGA 3FOGA 2RAJA 4ATMA 1X04A 2IWLX 4IKBB 1XTEA 3HAJA 5C5BB 2Z0VA 2Q13A 3QE6A 1Y2OA 2RAKA 1XTNA 4P2IA 4H8SA 2ELBA 4AZ9A 2REAA 3Q84A 3IQ2A 3HPCX
chains in the Genus database with same CATH superfamily
3D4YA 4AZ7A 3FD9A 2MI7A 3ACOA 1R34A 4NSWA 3L3OM 1QWNA 4IM3A 3T48A 2F7RA 2V14A 3BVXA 3B52X 3HAIA 2YLLA 4AKVA 2C08A 4EZSA 1KQ6A 2JNKA 1U00A 1GD5A 4PQPA 4E3CA 1GN9A 2X3XA 4AVMA 3I01A 2YLAA 1SU6A 2ALWA 1I49A 4HASA 4KIKB 4IM0A 1O7DB 3ABHA 3QWEA 2KHOA 2I4KA 4EZVA 4EZRA 3LLLA 4AZ6A 2OO2A 4HR1A 3CAZA 1TQVA 3P0CA 3EJPA 2F7QA 3DX4A 3DX3A 4ON3A 4IM2A 4R5GA 3G9GA 2D1LA 3ER9B 2F1AA 1OA0A 4AZBA 1I4TA 4JWDA 1E1DA 1URUA 4OXWA 3OWGA 2ND1A 3LMFA 3EJQA 2WINM 5FIGA 1XTNA 3CV5A 1DKZA 2F7OA 3D51A 3Q84A 3IQ2A 3O3MB 2WYIA 3SYVA 1UPXA 2D4CA 3ZEDA 2L73A 4JN4A 3BVUA 3BUIA 3ER8C 2F7PA 3KAWA 1WDZA 3OK8A 4EZNA 4JNEA 2X5CA 4WPCA 2YKTA 1GNLA 4EZPA 3DX1A 3BUBA 3L3PA 4DCNC 4H6IA 3OHXM 3O3NB 4HR1B 2REDA 2GF4A 3B53X 3DPOA 2OW6A 4R5LA 4R5KA 3C7NA 3SOGA 4UDYX 3EJSA 1R33A 2QXLA 3T49A 3HPBA 2NCZA 4E81A 4BGJA 3DDGA 2DYBA 1YWMA 5E84A 2OZNB 2EWFA 2OW7A 2GAFD 2LM0A 3T46A 4FM3A 3D2FA 3DYTA 4EZZA 1TQWA 3BVTA 1OAOA 4PZGA 4ATMA 1X04A 2IWLX 1XTEA 2Z0VA 4JWCA 3T47A 1ZYLA 4P2IA 3B51X 2YL9A 1PS3A 3T4AG 4IWPA 3QNJA 3KAVA 3BUQA 4AZCA 3UITA 4FZPA 3DPPA 3DDFA 3EJUA 4G6QA 2FYVA 1QWUA 4AZ5A 1TQTA 2X3WA 2YIBA 2O0I1 1E9VA 1DKXA 4D8JA 2X3VA 1ZWWA 2EX3B 1I4DA 3I39X 1HXKA 2YPSA 2CSKA 2PY6A 4IKBA 3BLBA 1SU7A 3BVVA 2EFLA 2GA9D 2EFKA 2V0OA 3CZNA 2Z0OA 3VKHA 2FICA 1KMDA 4EZQA 3I2WA 4JWIA 1O7KA 3LVTA 2LXYA 3O3OB 3GI7A 2OBLA 3BVWA 4HY9A 4EZOA 3I04A 4JLCA 4IKDA 4NQIA 2JNSA 2OBMA 3Q0KA 2YL6A 2YIVX 3CZSA 1SUFA 3F7WA 4AZCB 4FZOA 1OCUA 3BUPA 4BNEA 2ETTA 4IW0A 2RAIA 4AZIA 4P2JA 3QA8A 4IWQA 4M0MA 3CKDA 3HAHA 3LUIA 2F18A 4JWEA 1OCSA 3BUDA 3FOGA 2RAJA 4HYBA 4IKBB 4R5JA 4F01A 3DX0A 3HAJA 1W9MA 2Q13A 1SU8A 3DX2A 4UDXX 1TQSA 1HTYA 2PMRA 2YL8A 3D52A 2REAA 4EZTA 3D4ZA 3ERCC 3RPMA 4B9QA 1E2UA 1HWWA 5KBPA 3DPQA 2WYHA 2RT6A 4AZGA 2QKWA 3D2EA 4EZYA 4R5IA 3RV1A 4F00A 4PO2A 2Z0NA 5C5BA 3PLTA 1QX1A 2F1BA 1MJGA 2YIAA 3QNIA 4PQOA 4EZWA 2V6VA 1X03A 4FZSA 2AR5A 4IWOA 4H6HA 2WWEA 4I1QA 3EJTA 3A98A 1DKYA 4JNFA 2YI8A 1OA1A 3EJRA 4WPEA 5FLEX 3KDRA 2CZOA 2Q12A 4DYLA 1R5EA 3RV0A 1I4LA 1LQ7A 3VEAA 1H6HA 5TKYA 3VEBA 3D50A 1GNTA 2ZXQA 3M3WA 4KIKA 2YL5A 4JL9A 1JQKA 4EZXA 2ND0A 4EZUA 3CVRA 1O7DC 5C5BB 3QE6A 1Y2OA 2RAKA 2N3KA 2YI9A 4H8SA 2QFFA 4NPHA 2Z8YA 2ELBA 4AZ9A 1TQUA 4AZHA 3HPCX
chains in the Genus database with same CATH topology
3SYVA 2D4CA 2L73A 2X3WA 3ACOA 4NSWA 1WDZA 3OK8A 2X3VA 1ZWWA 4WPCA 1I4DA 2V14A 2YKTA 2YPSA 2CSKA 4IKBA 3HAIA 4AKVA 4DCNC 2Z0NA 5C5BA 2C08A 1KQ6A 3PLTA 2EFLA 2REDA 2EFKA 2V0OA 4PQPA 3QNIA 1GD5A 4PQOA 2X3XA 4AVMA 2V6VA 1X03A 2Z0OA 3SOGA 2FICA 4FZSA 2AR5A 1KMDA 3I2WA 1O7KA 1I49A 4HASA 2WWEA 4I1QA 3HPBA 4BGJA 3QWEA 3ABHA 2DYBA 4IKDA 4NQIA 2I4KA 3Q0KA 3LLLA 4WPEA 2CZOA 3CAZA 2Q12A 4DYLA 3P0CA 1OCUA 1I4LA 3DYTA 4BNEA 2ETTA 1H6HA 4ON3A 2RAIA 4P2JA 3G9GA 2D1LA 1I4TA 3HAHA 3LUIA 3M3WA 1URUA 1OCSA 4OXWA 4PZGA 3FOGA 2RAJA 4ATMA 1X04A 2IWLX 4IKBB 1XTEA 3HAJA 5C5BB 2Z0VA 2Q13A 3QE6A 1Y2OA 2RAKA 1XTNA 4P2IA 4H8SA 2ELBA 4AZ9A 2REAA 3Q84A 3IQ2A 3HPCX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYV A;  2D4C A;  2L73 A;  2X3W A;  3ACO A;  4NSW A;  1WDZ A;  3OK8 A;  2X3V A;  1ZWW A;  4WPC A;  1I4D A;  2V14 A;  2YKT A;  2YPS A;  2CSK A;  4IKB A;  3HAI A;  4AKV A;  4DCN C;  2Z0N A;  5C5B A;  2C08 A;  1KQ6 A;  3PLT A;  2EFL A;  2RED A;  2EFK A;  2V0O A;  4PQP A;  3QNI A;  1GD5 A;  4PQO A;  2X3X A;  4AVM A;  2V6V A;  1X03 A;  2Z0O A;  3SOG A;  2FIC A;  4FZS A;  2AR5 A;  1KMD A;  3I2W A;  1O7K A;  1I49 A;  4HAS A;  2WWE A;  4I1Q A;  3HPB A;  4BGJ A;  3QWE A;  3ABH A;  2DYB A;  4IKD A;  4NQI A;  2I4K A;  3Q0K A;  3LLL A;  4WPE A;  2CZO A;  3CAZ A;  2Q12 A;  4DYL A;  3P0C A;  1OCU A;  1I4L A;  3DYT A;  4BNE A;  2ETT A;  1H6H A;  4ON3 A;  2RAI A;  4P2J A;  3G9G A;  2D1L A;  1I4T A;  3HAH A;  3LUI A;  3M3W A;  1URU A;  1OCS A;  4OXW A;  4PZG A;  3FOG A;  2RAJ A;  4ATM A;  1X04 A;  2IWL X;  4IKB B;  1XTE A;  3HAJ A;  5C5B B;  2Z0V A;  2Q13 A;  3QE6 A;  1Y2O A;  2RAK A;  1XTN A;  4P2I A;  4H8S A;  2ELB A;  4AZ9 A;  2REA A;  3Q84 A;  3IQ2 A;  3HPC X; 
#chains in the Genus database with same CATH topology
 3D4Y A;  4AZ7 A;  3FD9 A;  2MI7 A;  3ACO A;  1R34 A;  4NSW A;  3L3O M;  1QWN A;  4IM3 A;  3T48 A;  2F7R A;  2V14 A;  3BVX A;  3B52 X;  3HAI A;  2YLL A;  4AKV A;  2C08 A;  4EZS A;  1KQ6 A;  2JNK A;  1U00 A;  1GD5 A;  4PQP A;  4E3C A;  1GN9 A;  2X3X A;  4AVM A;  3I01 A;  2YLA A;  1SU6 A;  2ALW A;  1I49 A;  4HAS A;  4KIK B;  4IM0 A;  1O7D B;  3ABH A;  3QWE A;  2KHO A;  2I4K A;  4EZV A;  4EZR A;  3LLL A;  4AZ6 A;  2OO2 A;  4HR1 A;  3CAZ A;  1TQV A;  3P0C A;  3EJP A;  2F7Q A;  3DX4 A;  3DX3 A;  4ON3 A;  4IM2 A;  4R5G A;  3G9G A;  2D1L A;  3ER9 B;  2F1A A;  1OA0 A;  4AZB A;  1I4T A;  4JWD A;  1E1D A;  1URU A;  4OXW A;  3OWG A;  2ND1 A;  3LMF A;  3EJQ A;  2WIN M;  5FIG A;  1XTN A;  3CV5 A;  1DKZ A;  2F7O A;  3D51 A;  3Q84 A;  3IQ2 A;  3O3M B;  2WYI A;  3SYV A;  1UPX A;  2D4C A;  3ZED A;  2L73 A;  4JN4 A;  3BVU A;  3BUI A;  3ER8 C;  2F7P A;  3KAW A;  1WDZ A;  3OK8 A;  4EZN A;  4JNE A;  2X5C A;  4WPC A;  2YKT A;  1GNL A;  4EZP A;  3DX1 A;  3BUB A;  3L3P A;  4DCN C;  4H6I A;  3OHX M;  3O3N B;  4HR1 B;  2RED A;  2GF4 A;  3B53 X;  3DPO A;  2OW6 A;  4R5L A;  4R5K A;  3C7N A;  3SOG A;  4UDY X;  3EJS A;  1R33 A;  2QXL A;  3T49 A;  3HPB A;  2NCZ A;  4E81 A;  4BGJ A;  3DDG A;  2DYB A;  1YWM A;  5E84 A;  2OZN B;  2EWF A;  2OW7 A;  2GAF D;  2LM0 A;  3T46 A;  4FM3 A;  3D2F A;  3DYT A;  4EZZ A;  1TQW A;  3BVT A;  1OAO A;  4PZG A;  4ATM A;  1X04 A;  2IWL X;  1XTE A;  2Z0V A;  4JWC A;  3T47 A;  1ZYL A;  4P2I A;  3B51 X;  2YL9 A;  1PS3 A;  3T4A G;  4IWP A;  3QNJ A;  3KAV A;  3BUQ A;  4AZC A;  3UIT A;  4FZP A;  3DPP A;  3DDF A;  3EJU A;  4G6Q A;  2FYV A;  1QWU A;  4AZ5 A;  1TQT A;  2X3W A;  2YIB A;  2O0I 1;  1E9V A;  1DKX A;  4D8J A;  2X3V A;  1ZWW A;  2EX3 B;  1I4D A;  3I39 X;  1HXK A;  2YPS A;  2CSK A;  2PY6 A;  4IKB A;  3BLB A;  1SU7 A;  3BVV A;  2EFL A;  2GA9 D;  2EFK A;  2V0O A;  3CZN A;  2Z0O A;  3VKH A;  2FIC A;  1KMD A;  4EZQ A;  3I2W A;  4JWI A;  1O7K A;  3LVT A;  2LXY A;  3O3O B;  3GI7 A;  2OBL A;  3BVW A;  4HY9 A;  4EZO A;  3I04 A;  4JLC A;  4IKD A;  4NQI A;  2JNS A;  2OBM A;  3Q0K A;  2YL6 A;  2YIV X;  3CZS A;  1SUF A;  3F7W A;  4AZC B;  4FZO A;  1OCU A;  3BUP A;  4BNE A;  2ETT A;  4IW0 A;  2RAI A;  4AZI A;  4P2J A;  3QA8 A;  4IWQ A;  4M0M A;  3CKD A;  3HAH A;  3LUI A;  2F18 A;  4JWE A;  1OCS A;  3BUD A;  3FOG A;  2RAJ A;  4HYB A;  4IKB B;  4R5J A;  4F01 A;  3DX0 A;  3HAJ A;  1W9M A;  2Q13 A;  1SU8 A;  3DX2 A;  4UDX X;  1TQS A;  1HTY A;  2PMR A;  2YL8 A;  3D52 A;  2REA A;  4EZT A;  3D4Z A;  3ERC C;  3RPM A;  4B9Q A;  1E2U A;  1HWW A;  5KBP A;  3DPQ A;  2WYH A;  2RT6 A;  4AZG A;  2QKW A;  3D2E A;  4EZY A;  4R5I A;  3RV1 A;  4F00 A;  4PO2 A;  2Z0N A;  5C5B A;  3PLT A;  1QX1 A;  2F1B A;  1MJG A;  2YIA A;  3QNI A;  4PQO A;  4EZW A;  2V6V A;  1X03 A;  4FZS A;  2AR5 A;  4IWO A;  4H6H A;  2WWE A;  4I1Q A;  3EJT A;  3A98 A;  1DKY A;  4JNF A;  2YI8 A;  1OA1 A;  3EJR A;  4WPE A;  5FLE X;  3KDR A;  2CZO A;  2Q12 A;  4DYL A;  1R5E A;  3RV0 A;  1I4L A;  1LQ7 A;  3VEA A;  1H6H A;  5TKY A;  3VEB A;  3D50 A;  1GNT A;  2ZXQ A;  3M3W A;  4KIK A;  2YL5 A;  4JL9 A;  1JQK A;  4EZX A;  2ND0 A;  4EZU A;  3CVR A;  1O7D C;  5C5B B;  3QE6 A;  1Y2O A;  2RAK A;  2N3K A;  2YI9 A;  4H8S A;  2QFF A;  4NPH A;  2Z8Y A;  2ELB A;  4AZ9 A;  1TQU A;  4AZH A;  3HPC X; 
#chains in the Genus database with same CATH homology
 3SYV A;  2D4C A;  2L73 A;  2X3W A;  3ACO A;  4NSW A;  1WDZ A;  3OK8 A;  2X3V A;  1ZWW A;  4WPC A;  1I4D A;  2V14 A;  2YKT A;  2YPS A;  2CSK A;  4IKB A;  3HAI A;  4AKV A;  4DCN C;  2Z0N A;  5C5B A;  2C08 A;  1KQ6 A;  3PLT A;  2EFL A;  2RED A;  2EFK A;  2V0O A;  4PQP A;  3QNI A;  1GD5 A;  4PQO A;  2X3X A;  4AVM A;  2V6V A;  1X03 A;  2Z0O A;  3SOG A;  2FIC A;  4FZS A;  2AR5 A;  1KMD A;  3I2W A;  1O7K A;  1I49 A;  4HAS A;  2WWE A;  4I1Q A;  3HPB A;  4BGJ A;  3QWE A;  3ABH A;  2DYB A;  4IKD A;  4NQI A;  2I4K A;  3Q0K A;  3LLL A;  4WPE A;  2CZO A;  3CAZ A;  2Q12 A;  4DYL A;  3P0C A;  1OCU A;  1I4L A;  3DYT A;  4BNE A;  2ETT A;  1H6H A;  4ON3 A;  2RAI A;  4P2J A;  3G9G A;  2D1L A;  1I4T A;  3HAH A;  3LUI A;  3M3W A;  1URU A;  1OCS A;  4OXW A;  4PZG A;  3FOG A;  2RAJ A;  4ATM A;  1X04 A;  2IWL X;  4IKB B;  1XTE A;  3HAJ A;  5C5B B;  2Z0V A;  2Q13 A;  3QE6 A;  1Y2O A;  2RAK A;  1XTN A;  4P2I A;  4H8S A;  2ELB A;  4AZ9 A;  2REA A;  3Q84 A;  3IQ2 A;  3HPC X; 
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similar chains in the Genus database (?% sequence similarity)
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