2RAKA

Pi(3)p bound px-bar membrane remodeling unit of sorting nexin 9
Total Genus 128
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
382
structure length
382
Chain Sequence
PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (341-344)AH1 (216-221)TIV1 (264-267)S4 (270-276)AH5 (359-371)TIV2 (277-280)S5 (283-286)TI2 (276-279)AH4 (348-354)TIV4 (342-345)TI4 (344-347)TIV5 (343-346)AH2 (287-302)TIV3 (302-305)TVIII2 (246-249)S3 (252-259)O1 (314-316)3H1 (376-382)S1 (232-235)TI1 (237-240)TIV6 (372-375)TVIII1 (222-225)AH3 (321-340)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
molecule keywords Sorting nexin-9
total genus 128
structure length 382
sequence length 382
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2rakA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2rakA02
3QNIA 4AVMA 4NSWA 3FOGA 4AZ9A 1H6HA 2FICA 1Y2OA 2RAJA 4BNEA 2EFKA 2X3VA 3ACOA 1KMDA 4ATMA 2AR5A 3SOGA 3OK8A 2X3XA 2V6VA 1URUA 2V14A 4H8SA 3CAZA 2YPSA 2CZOA 2Z0OA 3SYVA 3ABHA 4OXWA 4WPEA 1OCSA 1WDZA 3LUIA 2D1LA 1KQ6A 2C08A 4P2IA 3Q84A 1I4LA 2Z0NA 1XTEA 4IKDA 3HPCX 2Q13A 3DYTA 4IKBB 4AKVA 2RAKA 2ETTA 1X04A 1I4DA 2X3WA 4DCNC 2I4KA 1XTNA 4NQIA 1O7KA 4PQPA 3Q0KA 2WWEA 3LLLA 4IKBA 3QE6A 1I49A 2DYBA 1I4TA 4ON3A 2V0OA 3QWEA 2Q12A 3G9GA 1GD5A 3IQ2A 4I1QA 2REDA 1OCUA 4BGJA 4WPCA 4PZGA 1ZWWA 4P2JA 4PQOA 3PLTA 2YKTA 5C5BA 2L73A 3HAIA 2IWLX 3I2WA 3HAHA 2RAIA 2D4CA 3P0CA 2REAA 2CSKA 1X03A 2EFLA 2Z0VA 4DYLA 3HAJA 5C5BB 4FZSA 2ELBA 3HPBA 4HASA 3M3WA
chains in the Genus database with same CATH superfamily
3QNIA 2LM0A 4AVMA 2JNSA 3VEAA 3ERCC 4EZVA 3DDFA 2F7QA 2N3KA 4UDYX 1H6HA 2FICA 3ACOA 3T49A 4ATMA 2AR5A 2X3XA 4IM2A 1YWMA 4JWDA 1URUA 2YPSA 1U00A 3CVRA 1OA0A 3D51A 3SYVA 4IWOA 4F00A 4WPEA 4EZXA 1WDZA 3B52X 3D2EA 3LUIA 1UPXA 3I04A 1E2UA 2C08A 2O0I1 1E9VA 2Z0NA 2ZXQA 2ND1A 3DPPA 2MI7A 4JLCA 3RV1A 4NPHA 4E81A 2F1BA 1GNLA 1X04A 2YIVX 2X3WA 1TQSA 2YL6A 3O3NB 3LLLA 2X5CA 3QE6A 3DPQA 2PMRA 2YLAA 4R5LA 4ON3A 2F7PA 3QWEA 4PO2A 3CZSA 2Q12A 4G6QA 3EJQA 3BUBA 4P2JA 1SUFA 2F1AA 4B9QA 1TQTA 3EJUA 2IWLX 3BUQA 4HR1A 3GI7A 2RAIA 1X03A 4DYLA 4IW0A 3EJSA 4JNFA 3ZEDA 4JNEA 4HR1B 1SU8A 3RPMA 3ER9B 2YLLA 1TQVA 4JWCA 3FOGA 3F7WA 1Y2OA 4EZWA 3CZNA 3OK8A 5KBPA 2OBMA 4FM3A 4H8SA 1R5EA 1SU7A 4R5GA 1HTYA 3BVXA 1DKZA 1QX1A 5TKYA 3Q84A 4EZOA 2OBLA 1JQKA 1XTEA 3O3MB 2NCZA 2GA9D 2Q13A 3T47A 2ALWA 3DX2A 4AKVA 1OA1A 2RAKA 2PY6A 2QFFA 4DCNC 3EJTA 4R5IA 4IWQA 3L3OM 2WINM 2RT6A 4HYBA 2DYBA 4AZ7A 3VKHA 1GNTA 3G9GA 1GD5A 3IQ2A 4I1QA 2YIAA 3B51X 3KAVA 3A98A 3BVUA 5FLEX 2L73A 3HAIA 2GAFD 4IWPA 3HAHA 1TQWA 2CSKA 2Z0VA 2QKWA 3DX4A 3RV0A 2ELBA 3BVTA 3DX1A 4HASA 4EZQA 3BLBA 4EZPA 3CKDA 4AZ9A 2EFKA 1R33A 3B53X 4H6HA 2X3VA 4E3CA 4IM3A 3DX0A 2V6VA 2V14A 3CAZA 2WYIA 4EZTA 2CZOA 4HY9A 3EJPA 2Z0OA 1DKXA 4OXWA 1OCSA 3DPOA 3KAWA 1LQ7A 1SU6A 2D1LA 3BVWA 3QNJA 3LMFA 3DX3A 1TQUA 5FIGA 3QA8A 4EZRA 4IKDA 2F18A 4UDXX 4AZCA 3HPCX 4AZHA 2OO2A 4IKBB 4EZNA 2FYVA 3BVVA 3T48A 2I4KA 2YL8A 3CV5A 4FZOA 4NQIA 1PS3A 2KHOA 3OWGA 3Q0KA 4PQPA 4JWEA 4AZCB 2EX3B 4AZGA 2V0OA 2REDA 4EZUA 4PZGA 3T46A 3UITA 4PQOA 1HXKA 2YKTA 3OHXM 2YI9A 4H6IA 2YI8A 3ER8C 1DKYA 2LXYA 4EZZA 2WYHA 4AZIA 3I39X 2D4CA 3P0CA 4R5KA 3D4ZA 2EFLA 2OZNB 2OW7A 3HAJA 4KIKA 1HWWA 4FZSA 4F01A 3HPBA 4IM0A 4AZBA 2YL5A 3M3WA 4NSWA 5E84A 4KIKB 2EWFA 2RAJA 4JWIA 4BNEA 1E1DA 3T4AG 1KMDA 3SOGA 1OAOA 1O7DB 2QXLA 2YL9A 2JNKA 4EZYA 1O7DC 1GN9A 3BUPA 1QWNA 2F7OA 3BUDA 3ABHA 2OW6A 4EZSA 1KQ6A 1MJGA 1ZYLA 4R5JA 4P2IA 1I4LA 3I01A 3O3OB 3DYTA 3C7NA 4AZ5A 3BUIA 2ETTA 1I4DA 3LVTA 1XTNA 4AZ6A 1O7KA 2YIBA 3DDGA 2WWEA 2F7RA 4D8JA 4IKBA 1I49A 1I4TA 1OCUA 4BGJA 4WPCA 1ZWWA 1W9MA 3FD9A 3D2FA 3PLTA 5C5BA 2GF4A 3D52A 3L3PA 3I2WA 3EJRA 3KDRA 4M0MA 4FZPA 3D50A 2ND0A 4JL9A 2REAA 1R34A 5C5BB 3VEBA 3D4YA 1QWUA 4JN4A 2Z8YA
chains in the Genus database with same CATH topology
3QNIA 4AVMA 4NSWA 3FOGA 4AZ9A 1H6HA 2FICA 1Y2OA 2RAJA 4BNEA 2EFKA 2X3VA 3ACOA 1KMDA 4ATMA 2AR5A 3SOGA 3OK8A 2X3XA 2V6VA 1URUA 2V14A 4H8SA 3CAZA 2YPSA 2CZOA 2Z0OA 3SYVA 3ABHA 4OXWA 4WPEA 1OCSA 1WDZA 3LUIA 2D1LA 1KQ6A 2C08A 4P2IA 3Q84A 1I4LA 2Z0NA 1XTEA 4IKDA 3HPCX 2Q13A 3DYTA 4IKBB 4AKVA 2RAKA 2ETTA 1X04A 1I4DA 2X3WA 4DCNC 2I4KA 1XTNA 4NQIA 1O7KA 4PQPA 3Q0KA 2WWEA 3LLLA 4IKBA 3QE6A 1I49A 2DYBA 1I4TA 4ON3A 2V0OA 3QWEA 2Q12A 3G9GA 1GD5A 3IQ2A 4I1QA 2REDA 1OCUA 4BGJA 4WPCA 4PZGA 1ZWWA 4P2JA 4PQOA 3PLTA 2YKTA 5C5BA 2L73A 3HAIA 2IWLX 3I2WA 3HAHA 2RAIA 2D4CA 3P0CA 2REAA 2CSKA 1X03A 2EFLA 2Z0VA 4DYLA 3HAJA 5C5BB 4FZSA 2ELBA 3HPBA 4HASA 3M3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QNI A;  4AVM A;  4NSW A;  3FOG A;  4AZ9 A;  1H6H A;  2FIC A;  1Y2O A;  2RAJ A;  4BNE A;  2EFK A;  2X3V A;  3ACO A;  1KMD A;  4ATM A;  2AR5 A;  3SOG A;  3OK8 A;  2X3X A;  2V6V A;  1URU A;  2V14 A;  4H8S A;  3CAZ A;  2YPS A;  2CZO A;  2Z0O A;  3SYV A;  3ABH A;  4OXW A;  4WPE A;  1OCS A;  1WDZ A;  3LUI A;  2D1L A;  1KQ6 A;  2C08 A;  4P2I A;  3Q84 A;  1I4L A;  2Z0N A;  1XTE A;  4IKD A;  3HPC X;  2Q13 A;  3DYT A;  4IKB B;  4AKV A;  2RAK A;  2ETT A;  1X04 A;  1I4D A;  2X3W A;  4DCN C;  2I4K A;  1XTN A;  4NQI A;  1O7K A;  4PQP A;  3Q0K A;  2WWE A;  3LLL A;  4IKB A;  3QE6 A;  1I49 A;  2DYB A;  1I4T A;  4ON3 A;  2V0O A;  3QWE A;  2Q12 A;  3G9G A;  1GD5 A;  3IQ2 A;  4I1Q A;  2RED A;  1OCU A;  4BGJ A;  4WPC A;  4PZG A;  1ZWW A;  4P2J A;  4PQO A;  3PLT A;  2YKT A;  5C5B A;  2L73 A;  3HAI A;  2IWL X;  3I2W A;  3HAH A;  2RAI A;  2D4C A;  3P0C A;  2REA A;  2CSK A;  1X03 A;  2EFL A;  2Z0V A;  4DYL A;  3HAJ A;  5C5B B;  4FZS A;  2ELB A;  3HPB A;  4HAS A;  3M3W A; 
#chains in the Genus database with same CATH topology
 3QNI A;  2LM0 A;  4AVM A;  2JNS A;  3VEA A;  3ERC C;  4EZV A;  3DDF A;  2F7Q A;  2N3K A;  4UDY X;  1H6H A;  2FIC A;  3ACO A;  3T49 A;  4ATM A;  2AR5 A;  2X3X A;  4IM2 A;  1YWM A;  4JWD A;  1URU A;  2YPS A;  1U00 A;  3CVR A;  1OA0 A;  3D51 A;  3SYV A;  4IWO A;  4F00 A;  4WPE A;  4EZX A;  1WDZ A;  3B52 X;  3D2E A;  3LUI A;  1UPX A;  3I04 A;  1E2U A;  2C08 A;  2O0I 1;  1E9V A;  2Z0N A;  2ZXQ A;  2ND1 A;  3DPP A;  2MI7 A;  4JLC A;  3RV1 A;  4NPH A;  4E81 A;  2F1B A;  1GNL A;  1X04 A;  2YIV X;  2X3W A;  1TQS A;  2YL6 A;  3O3N B;  3LLL A;  2X5C A;  3QE6 A;  3DPQ A;  2PMR A;  2YLA A;  4R5L A;  4ON3 A;  2F7P A;  3QWE A;  4PO2 A;  3CZS A;  2Q12 A;  4G6Q A;  3EJQ A;  3BUB A;  4P2J A;  1SUF A;  2F1A A;  4B9Q A;  1TQT A;  3EJU A;  2IWL X;  3BUQ A;  4HR1 A;  3GI7 A;  2RAI A;  1X03 A;  4DYL A;  4IW0 A;  3EJS A;  4JNF A;  3ZED A;  4JNE A;  4HR1 B;  1SU8 A;  3RPM A;  3ER9 B;  2YLL A;  1TQV A;  4JWC A;  3FOG A;  3F7W A;  1Y2O A;  4EZW A;  3CZN A;  3OK8 A;  5KBP A;  2OBM A;  4FM3 A;  4H8S A;  1R5E A;  1SU7 A;  4R5G A;  1HTY A;  3BVX A;  1DKZ A;  1QX1 A;  5TKY A;  3Q84 A;  4EZO A;  2OBL A;  1JQK A;  1XTE A;  3O3M B;  2NCZ A;  2GA9 D;  2Q13 A;  3T47 A;  2ALW A;  3DX2 A;  4AKV A;  1OA1 A;  2RAK A;  2PY6 A;  2QFF A;  4DCN C;  3EJT A;  4R5I A;  4IWQ A;  3L3O M;  2WIN M;  2RT6 A;  4HYB A;  2DYB A;  4AZ7 A;  3VKH A;  1GNT A;  3G9G A;  1GD5 A;  3IQ2 A;  4I1Q A;  2YIA A;  3B51 X;  3KAV A;  3A98 A;  3BVU A;  5FLE X;  2L73 A;  3HAI A;  2GAF D;  4IWP A;  3HAH A;  1TQW A;  2CSK A;  2Z0V A;  2QKW A;  3DX4 A;  3RV0 A;  2ELB A;  3BVT A;  3DX1 A;  4HAS A;  4EZQ A;  3BLB A;  4EZP A;  3CKD A;  4AZ9 A;  2EFK A;  1R33 A;  3B53 X;  4H6H A;  2X3V A;  4E3C A;  4IM3 A;  3DX0 A;  2V6V A;  2V14 A;  3CAZ A;  2WYI A;  4EZT A;  2CZO A;  4HY9 A;  3EJP A;  2Z0O A;  1DKX A;  4OXW A;  1OCS A;  3DPO A;  3KAW A;  1LQ7 A;  1SU6 A;  2D1L A;  3BVW A;  3QNJ A;  3LMF A;  3DX3 A;  1TQU A;  5FIG A;  3QA8 A;  4EZR A;  4IKD A;  2F18 A;  4UDX X;  4AZC A;  3HPC X;  4AZH A;  2OO2 A;  4IKB B;  4EZN A;  2FYV A;  3BVV A;  3T48 A;  2I4K A;  2YL8 A;  3CV5 A;  4FZO A;  4NQI A;  1PS3 A;  2KHO A;  3OWG A;  3Q0K A;  4PQP A;  4JWE A;  4AZC B;  2EX3 B;  4AZG A;  2V0O A;  2RED A;  4EZU A;  4PZG A;  3T46 A;  3UIT A;  4PQO A;  1HXK A;  2YKT A;  3OHX M;  2YI9 A;  4H6I A;  2YI8 A;  3ER8 C;  1DKY A;  2LXY A;  4EZZ A;  2WYH A;  4AZI A;  3I39 X;  2D4C A;  3P0C A;  4R5K A;  3D4Z A;  2EFL A;  2OZN B;  2OW7 A;  3HAJ A;  4KIK A;  1HWW A;  4FZS A;  4F01 A;  3HPB A;  4IM0 A;  4AZB A;  2YL5 A;  3M3W A;  4NSW A;  5E84 A;  4KIK B;  2EWF A;  2RAJ A;  4JWI A;  4BNE A;  1E1D A;  3T4A G;  1KMD A;  3SOG A;  1OAO A;  1O7D B;  2QXL A;  2YL9 A;  2JNK A;  4EZY A;  1O7D C;  1GN9 A;  3BUP A;  1QWN A;  2F7O A;  3BUD A;  3ABH A;  2OW6 A;  4EZS A;  1KQ6 A;  1MJG A;  1ZYL A;  4R5J A;  4P2I A;  1I4L A;  3I01 A;  3O3O B;  3DYT A;  3C7N A;  4AZ5 A;  3BUI A;  2ETT A;  1I4D A;  3LVT A;  1XTN A;  4AZ6 A;  1O7K A;  2YIB A;  3DDG A;  2WWE A;  2F7R A;  4D8J A;  4IKB A;  1I49 A;  1I4T A;  1OCU A;  4BGJ A;  4WPC A;  1ZWW A;  1W9M A;  3FD9 A;  3D2F A;  3PLT A;  5C5B A;  2GF4 A;  3D52 A;  3L3P A;  3I2W A;  3EJR A;  3KDR A;  4M0M A;  4FZP A;  3D50 A;  2ND0 A;  4JL9 A;  2REA A;  1R34 A;  5C5B B;  3VEB A;  3D4Y A;  1QWU A;  4JN4 A;  2Z8Y A; 
#chains in the Genus database with same CATH homology
 3QNI A;  4AVM A;  4NSW A;  3FOG A;  4AZ9 A;  1H6H A;  2FIC A;  1Y2O A;  2RAJ A;  4BNE A;  2EFK A;  2X3V A;  3ACO A;  1KMD A;  4ATM A;  2AR5 A;  3SOG A;  3OK8 A;  2X3X A;  2V6V A;  1URU A;  2V14 A;  4H8S A;  3CAZ A;  2YPS A;  2CZO A;  2Z0O A;  3SYV A;  3ABH A;  4OXW A;  4WPE A;  1OCS A;  1WDZ A;  3LUI A;  2D1L A;  1KQ6 A;  2C08 A;  4P2I A;  3Q84 A;  1I4L A;  2Z0N A;  1XTE A;  4IKD A;  3HPC X;  2Q13 A;  3DYT A;  4IKB B;  4AKV A;  2RAK A;  2ETT A;  1X04 A;  1I4D A;  2X3W A;  4DCN C;  2I4K A;  1XTN A;  4NQI A;  1O7K A;  4PQP A;  3Q0K A;  2WWE A;  3LLL A;  4IKB A;  3QE6 A;  1I49 A;  2DYB A;  1I4T A;  4ON3 A;  2V0O A;  3QWE A;  2Q12 A;  3G9G A;  1GD5 A;  3IQ2 A;  4I1Q A;  2RED A;  1OCU A;  4BGJ A;  4WPC A;  4PZG A;  1ZWW A;  4P2J A;  4PQO A;  3PLT A;  2YKT A;  5C5B A;  2L73 A;  3HAI A;  2IWL X;  3I2W A;  3HAH A;  2RAI A;  2D4C A;  3P0C A;  2REA A;  2CSK A;  1X03 A;  2EFL A;  2Z0V A;  4DYL A;  3HAJ A;  5C5B B;  4FZS A;  2ELB A;  3HPB A;  4HAS A;  3M3W A; 
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similar chains in the Genus database (?% sequence similarity)
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