3DYTA

Crystal structure of snx9px-bar (230-595), c2221
Total Genus 128

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
366
structure length
355
Chain Sequence
EKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (267-270)S2 (271-276)S3 (283-286)TIV3 (323-327)S1 (252-255)TVIII1 (246-249)AH1 (287-302)3H2 (337-340)AH2 (329-334)EMPTY3H1 (257-259)TI2 (276-279)TIV2 (302-305)TI1 (237-240)Updating...
connected with : NaN
molecule tags Transport protein
source organism Homo sapiens
publication title Structure and plasticity of endophilin and sorting nexin 9.
pubmed doi rcsb
molecule keywords Sorting nexin-9
total genus 128
structure length 355
sequence length 366
ec nomenclature
pdb deposition date 2008-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3dytA02
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 3dytA01
3PLTA 3HAHA 2C08A 4PQPA 2D1LA 3LUIA 1URUA 1XTEA 2FICA 3CAZA 4WPEA 1X03A 3P0CA 3M3WA 2CSKA 4NQIA 4AVMA 2Z0VA 1OCUA 2AR5A 1KMDA 3SOGA 3FOGA 4BGJA 1O7KA 4DCNC 4OXWA 2YKTA 3G9GA 2YPSA 1I4LA 2Q13A 3HAJA 4FZSA 2Q12A 2CZOA 1KQ6A 1XTNA 2ETTA 1H6HA 4P2JA 2REAA 3QNIA 1I49A 2X3VA 2L73A 4BNEA 4P2IA 5C5BA 2EFKA 1X04A 3DYTA 2V14A 2X3XA 5C5BB 3ABHA 4AZ9A 3ACOA 1I4TA 4IKDA 1ZWWA 4I1QA 2I4KA 4AKVA 4IKBA 2WWEA 4ON3A 3I2WA 1GD5A 2IWLX 2ELBA 3SYVA 4IKBB 3QE6A 1OCSA 3LLLA 2DYBA 2V6VA 2RAJA 2Z0NA 2RAKA 3IQ2A 3HPBA 2D4CA 4WPCA 4ATMA 2EFLA 1Y2OA 1I4DA 3Q84A 4PZGA 2RAIA 3Q0KA 1WDZA 4NSWA 4DYLA 4H8SA 2REDA 2X3WA 3QWEA 3OK8A 4PQOA 2V0OA 3HAIA 3HPCX 2Z0OA 4HASA
chains in the Genus database with same CATH superfamily
2GA9D 4EZXA 4AZIA 1URUA 4NPHA 4AZCA 4WPEA 3P0CA 4NQIA 1TQSA 2QXLA 1OA0A 3BVUA 4IM3A 4IWPA 3BVVA 4DCNC 4OXWA 2YL9A 2WYHA 2YLAA 3D52A 2YKTA 3G9GA 4R5IA 3D2EA 2N3KA 2YL5A 3KAVA 3L3OM 1O7DC 4EZQA 3D51A 4AZ7A 4EZUA 1TQUA 1HWWA 3QNIA 1I49A 2EWFA 4UDYX 1X04A 4KIKB 1MJGA 4HYBA 2OW7A 5C5BB 3ABHA 4AZ9A 4IKDA 1ZWWA 1HXKA 3BUBA 4IKBA 1OA1A 2IWLX 3SYVA 2YLLA 4FZOA 2DYBA 3HPBA 2D4CA 3DX0A 4WPCA 2YL6A 4PZGA 3Q0KA 4DYLA 3BLBA 4JNFA 3HAIA 4EZPA 4AZHA 2WINM 2C08A 3CKDA 3T49A 2FICA 4JLCA 3DX1A 3CAZA 3M3WA 3BUPA 4R5JA 3T47A 4AVMA 1HTYA 4BGJA 3DX3A 4B9QA 1DKYA 3FD9A 2O0I1 5KBPA 3HAJA 2CZOA 4R5KA 1KQ6A 1TQWA 3EJQA 3CVRA 4P2JA 3OWGA 4KIKA 1QX1A 2L73A 4BNEA 4P2IA 4IM0A 5C5BA 3BUDA 3QA8A 3GI7A 2ZXQA 4EZTA 4PO2A 3DYTA 2F7PA 2V14A 1JQKA 2F18A 3LMFA 3T48A 1E9VA 1SU8A 4HY9A 3D2FA 1R33A 3BUIA 1TQTA 4AKVA 3T46A 4F01A 1YWMA 2WWEA 3BVXA 3D4ZA 4IW0A 3DDFA 1GD5A 1QWUA 2FYVA 2OO2A 2EX3B 2YIAA 2OW6A 3EJUA 2Z0NA 2RAKA 5E84A 1SU7A 3KDRA 4H6IA 1Y2OA 4IWOA 3B51X 4F00A 3CZNA 4H8SA 2OBLA 3OK8A 3I04A 4G6QA 3HPCX 3RPMA 2Z0OA 3PLTA 4R5GA 3HAHA 1GNLA 4PQPA 2D1LA 1O7DB 3LUIA 4EZOA 1XTEA 4EZWA 2LXYA 4HR1B 3EJSA 2Z0VA 1OCUA 2AR5A 1KMDA 3SOGA 3C7NA 2MI7A 3RV0A 4EZSA 1DKZA 3F7WA 2YPSA 3B53X 4FZSA 3VEBA 2Q12A 4JNEA 2QKWA 1XTNA 2YI8A 2ETTA 1H6HA 3L3PA 4E3CA 5TKYA 3CV5A 4JWCA 3ERCC 3EJPA 2X3VA 2OZNB 3DPOA 2EFKA 1UPXA 2KHOA 2PY6A 3O3NB 4JL9A 4JWIA 1SU6A 1I4TA 3LVTA 4I1QA 1TQVA 3DX4A 3B52X 3OHXM 2YIVX 2F1BA 4JN4A 4JWDA 3DX2A 3QE6A 2ND1A 3LLLA 1PS3A 3IQ2A 2JNKA 3ER9B 2F7QA 4ATMA 2EFLA 3DPPA 1I4DA 1E1DA 2ALWA 4AZ5A 2X3WA 2YL8A 4R5LA 2F7RA 3KAWA 4FZPA 3O3MB 4D8JA 2F1AA 4H6HA 4HR1A 3QNJA 1GN9A 3D50A 4EZZA 2YI9A 1X03A 2CSKA 4AZBA 5FIGA 3ZEDA 1DKXA 4AZGA 3A98A 4AZCB 2X5CA 3FOGA 1O7KA 3DPQA 1R5EA 1U00A 4E81A 3BUQA 2YIBA 4IM2A 1I4LA 2Q13A 1GNTA 2GAFD 2RT6A 2PMRA 3ER8C 2REAA 3I01A 2Z8YA 3O3OB 2NCZA 3CZSA 4FM3A 3EJRA 2X3XA 3UITA 4EZYA 4EZNA 1R34A 3RV1A 3ACOA 4EZVA 4JWEA 2F7OA 2I4KA 1SUFA 3D4YA 4ON3A 1E2UA 1LQ7A 3I2WA 2ND0A 2ELBA 4IKBB 1OCSA 3BVWA 2V6VA 2RAJA 1QWNA 4M0MA 3VKHA 4UDXX 3DDGA 5FLEX 2OBMA 4AZ6A 3BVTA 4EZRA 2WYIA 2JNSA 3Q84A 1W9MA 2RAIA 1WDZA 4NSWA 3EJTA 3VEAA 4IWQA 1OAOA 2REDA 3T4AG 3QWEA 1ZYLA 4PQOA 3I39X 2V0OA 2GF4A 2LM0A 4HASA 2QFFA
chains in the Genus database with same CATH topology
3PLTA 3HAHA 2C08A 4PQPA 2D1LA 3LUIA 1URUA 1XTEA 2FICA 3CAZA 4WPEA 1X03A 3P0CA 3M3WA 2CSKA 4NQIA 4AVMA 2Z0VA 1OCUA 2AR5A 1KMDA 3SOGA 3FOGA 4BGJA 1O7KA 4DCNC 4OXWA 2YKTA 3G9GA 2YPSA 1I4LA 2Q13A 3HAJA 4FZSA 2Q12A 2CZOA 1KQ6A 1XTNA 2ETTA 1H6HA 4P2JA 2REAA 3QNIA 1I49A 2X3VA 2L73A 4BNEA 4P2IA 5C5BA 2EFKA 1X04A 3DYTA 2V14A 2X3XA 5C5BB 3ABHA 4AZ9A 3ACOA 1I4TA 4IKDA 1ZWWA 4I1QA 2I4KA 4AKVA 4IKBA 2WWEA 4ON3A 3I2WA 1GD5A 2IWLX 2ELBA 3SYVA 4IKBB 3QE6A 1OCSA 3LLLA 2DYBA 2V6VA 2RAJA 2Z0NA 2RAKA 3IQ2A 3HPBA 2D4CA 4WPCA 4ATMA 2EFLA 1Y2OA 1I4DA 3Q84A 4PZGA 2RAIA 3Q0KA 1WDZA 4NSWA 4DYLA 4H8SA 2REDA 2X3WA 3QWEA 3OK8A 4PQOA 2V0OA 3HAIA 3HPCX 2Z0OA 4HASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PLT A;  3HAH A;  2C08 A;  4PQP A;  2D1L A;  3LUI A;  1URU A;  1XTE A;  2FIC A;  3CAZ A;  4WPE A;  1X03 A;  3P0C A;  3M3W A;  2CSK A;  4NQI A;  4AVM A;  2Z0V A;  1OCU A;  2AR5 A;  1KMD A;  3SOG A;  3FOG A;  4BGJ A;  1O7K A;  4DCN C;  4OXW A;  2YKT A;  3G9G A;  2YPS A;  1I4L A;  2Q13 A;  3HAJ A;  4FZS A;  2Q12 A;  2CZO A;  1KQ6 A;  1XTN A;  2ETT A;  1H6H A;  4P2J A;  2REA A;  3QNI A;  1I49 A;  2X3V A;  2L73 A;  4BNE A;  4P2I A;  5C5B A;  2EFK A;  1X04 A;  3DYT A;  2V14 A;  2X3X A;  5C5B B;  3ABH A;  4AZ9 A;  3ACO A;  1I4T A;  4IKD A;  1ZWW A;  4I1Q A;  2I4K A;  4AKV A;  4IKB A;  2WWE A;  4ON3 A;  3I2W A;  1GD5 A;  2IWL X;  2ELB A;  3SYV A;  4IKB B;  3QE6 A;  1OCS A;  3LLL A;  2DYB A;  2V6V A;  2RAJ A;  2Z0N A;  2RAK A;  3IQ2 A;  3HPB A;  2D4C A;  4WPC A;  4ATM A;  2EFL A;  1Y2O A;  1I4D A;  3Q84 A;  4PZG A;  2RAI A;  3Q0K A;  1WDZ A;  4NSW A;  4DYL A;  4H8S A;  2RED A;  2X3W A;  3QWE A;  3OK8 A;  4PQO A;  2V0O A;  3HAI A;  3HPC X;  2Z0O A;  4HAS A; 
#chains in the Genus database with same CATH topology
 2GA9 D;  4EZX A;  4AZI A;  1URU A;  4NPH A;  4AZC A;  4WPE A;  3P0C A;  4NQI A;  1TQS A;  2QXL A;  1OA0 A;  3BVU A;  4IM3 A;  4IWP A;  3BVV A;  4DCN C;  4OXW A;  2YL9 A;  2WYH A;  2YLA A;  3D52 A;  2YKT A;  3G9G A;  4R5I A;  3D2E A;  2N3K A;  2YL5 A;  3KAV A;  3L3O M;  1O7D C;  4EZQ A;  3D51 A;  4AZ7 A;  4EZU A;  1TQU A;  1HWW A;  3QNI A;  1I49 A;  2EWF A;  4UDY X;  1X04 A;  4KIK B;  1MJG A;  4HYB A;  2OW7 A;  5C5B B;  3ABH A;  4AZ9 A;  4IKD A;  1ZWW A;  1HXK A;  3BUB A;  4IKB A;  1OA1 A;  2IWL X;  3SYV A;  2YLL A;  4FZO A;  2DYB A;  3HPB A;  2D4C A;  3DX0 A;  4WPC A;  2YL6 A;  4PZG A;  3Q0K A;  4DYL A;  3BLB A;  4JNF A;  3HAI A;  4EZP A;  4AZH A;  2WIN M;  2C08 A;  3CKD A;  3T49 A;  2FIC A;  4JLC A;  3DX1 A;  3CAZ A;  3M3W A;  3BUP A;  4R5J A;  3T47 A;  4AVM A;  1HTY A;  4BGJ A;  3DX3 A;  4B9Q A;  1DKY A;  3FD9 A;  2O0I 1;  5KBP A;  3HAJ A;  2CZO A;  4R5K A;  1KQ6 A;  1TQW A;  3EJQ A;  3CVR A;  4P2J A;  3OWG A;  4KIK A;  1QX1 A;  2L73 A;  4BNE A;  4P2I A;  4IM0 A;  5C5B A;  3BUD A;  3QA8 A;  3GI7 A;  2ZXQ A;  4EZT A;  4PO2 A;  3DYT A;  2F7P A;  2V14 A;  1JQK A;  2F18 A;  3LMF A;  3T48 A;  1E9V A;  1SU8 A;  4HY9 A;  3D2F A;  1R33 A;  3BUI A;  1TQT A;  4AKV A;  3T46 A;  4F01 A;  1YWM A;  2WWE A;  3BVX A;  3D4Z A;  4IW0 A;  3DDF A;  1GD5 A;  1QWU A;  2FYV A;  2OO2 A;  2EX3 B;  2YIA A;  2OW6 A;  3EJU A;  2Z0N A;  2RAK A;  5E84 A;  1SU7 A;  3KDR A;  4H6I A;  1Y2O A;  4IWO A;  3B51 X;  4F00 A;  3CZN A;  4H8S A;  2OBL A;  3OK8 A;  3I04 A;  4G6Q A;  3HPC X;  3RPM A;  2Z0O A;  3PLT A;  4R5G A;  3HAH A;  1GNL A;  4PQP A;  2D1L A;  1O7D B;  3LUI A;  4EZO A;  1XTE A;  4EZW A;  2LXY A;  4HR1 B;  3EJS A;  2Z0V A;  1OCU A;  2AR5 A;  1KMD A;  3SOG A;  3C7N A;  2MI7 A;  3RV0 A;  4EZS A;  1DKZ A;  3F7W A;  2YPS A;  3B53 X;  4FZS A;  3VEB A;  2Q12 A;  4JNE A;  2QKW A;  1XTN A;  2YI8 A;  2ETT A;  1H6H A;  3L3P A;  4E3C A;  5TKY A;  3CV5 A;  4JWC A;  3ERC C;  3EJP A;  2X3V A;  2OZN B;  3DPO A;  2EFK A;  1UPX A;  2KHO A;  2PY6 A;  3O3N B;  4JL9 A;  4JWI A;  1SU6 A;  1I4T A;  3LVT A;  4I1Q A;  1TQV A;  3DX4 A;  3B52 X;  3OHX M;  2YIV X;  2F1B A;  4JN4 A;  4JWD A;  3DX2 A;  3QE6 A;  2ND1 A;  3LLL A;  1PS3 A;  3IQ2 A;  2JNK A;  3ER9 B;  2F7Q A;  4ATM A;  2EFL A;  3DPP A;  1I4D A;  1E1D A;  2ALW A;  4AZ5 A;  2X3W A;  2YL8 A;  4R5L A;  2F7R A;  3KAW A;  4FZP A;  3O3M B;  4D8J A;  2F1A A;  4H6H A;  4HR1 A;  3QNJ A;  1GN9 A;  3D50 A;  4EZZ A;  2YI9 A;  1X03 A;  2CSK A;  4AZB A;  5FIG A;  3ZED A;  1DKX A;  4AZG A;  3A98 A;  4AZC B;  2X5C A;  3FOG A;  1O7K A;  3DPQ A;  1R5E A;  1U00 A;  4E81 A;  3BUQ A;  2YIB A;  4IM2 A;  1I4L A;  2Q13 A;  1GNT A;  2GAF D;  2RT6 A;  2PMR A;  3ER8 C;  2REA A;  3I01 A;  2Z8Y A;  3O3O B;  2NCZ A;  3CZS A;  4FM3 A;  3EJR A;  2X3X A;  3UIT A;  4EZY A;  4EZN A;  1R34 A;  3RV1 A;  3ACO A;  4EZV A;  4JWE A;  2F7O A;  2I4K A;  1SUF A;  3D4Y A;  4ON3 A;  1E2U A;  1LQ7 A;  3I2W A;  2ND0 A;  2ELB A;  4IKB B;  1OCS A;  3BVW A;  2V6V A;  2RAJ A;  1QWN A;  4M0M A;  3VKH A;  4UDX X;  3DDG A;  5FLE X;  2OBM A;  4AZ6 A;  3BVT A;  4EZR A;  2WYI A;  2JNS A;  3Q84 A;  1W9M A;  2RAI A;  1WDZ A;  4NSW A;  3EJT A;  3VEA A;  4IWQ A;  1OAO A;  2RED A;  3T4A G;  3QWE A;  1ZYL A;  4PQO A;  3I39 X;  2V0O A;  2GF4 A;  2LM0 A;  4HAS A;  2QFF A; 
#chains in the Genus database with same CATH homology
 3PLT A;  3HAH A;  2C08 A;  4PQP A;  2D1L A;  3LUI A;  1URU A;  1XTE A;  2FIC A;  3CAZ A;  4WPE A;  1X03 A;  3P0C A;  3M3W A;  2CSK A;  4NQI A;  4AVM A;  2Z0V A;  1OCU A;  2AR5 A;  1KMD A;  3SOG A;  3FOG A;  4BGJ A;  1O7K A;  4DCN C;  4OXW A;  2YKT A;  3G9G A;  2YPS A;  1I4L A;  2Q13 A;  3HAJ A;  4FZS A;  2Q12 A;  2CZO A;  1KQ6 A;  1XTN A;  2ETT A;  1H6H A;  4P2J A;  2REA A;  3QNI A;  1I49 A;  2X3V A;  2L73 A;  4BNE A;  4P2I A;  5C5B A;  2EFK A;  1X04 A;  3DYT A;  2V14 A;  2X3X A;  5C5B B;  3ABH A;  4AZ9 A;  3ACO A;  1I4T A;  4IKD A;  1ZWW A;  4I1Q A;  2I4K A;  4AKV A;  4IKB A;  2WWE A;  4ON3 A;  3I2W A;  1GD5 A;  2IWL X;  2ELB A;  3SYV A;  4IKB B;  3QE6 A;  1OCS A;  3LLL A;  2DYB A;  2V6V A;  2RAJ A;  2Z0N A;  2RAK A;  3IQ2 A;  3HPB A;  2D4C A;  4WPC A;  4ATM A;  2EFL A;  1Y2O A;  1I4D A;  3Q84 A;  4PZG A;  2RAI A;  3Q0K A;  1WDZ A;  4NSW A;  4DYL A;  4H8S A;  2RED A;  2X3W A;  3QWE A;  3OK8 A;  4PQO A;  2V0O A;  3HAI A;  3HPC X;  2Z0O A;  4HAS A; 
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