4AKVA

Crystal structure of human sorting nexin 33 (snx33)
Total Genus 140
50100150200250300020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
363
structure length
345
Chain Sequence
MYSIEMGPRGPQWKANPHPFACSVEDPISYKLTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYDN
5010015020025030030025020015010050
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (267-280)EMPTYAH4 (338-350)S1 (214-217)S2 (220-223)S3 (232-235)3H1 (323-325)S4 (251-256)TVIII2 (259-262)S5 (263-266)TI2 (256-259)TI3 (281-284)AH2 (304-319)TIV1 (320-323)AH3 (327-334)TI1 (217-220)TVIII1 (226-229)TII1 (301-304)Updating...
connected with : NaN
molecule tags Transport protein
source organism Homo sapiens
publication title Structure of Human Sorting Nexin 33
rcsb
molecule keywords SORTING NEXIN-33
total genus 140
structure length 345
sequence length 363
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4akvA02
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 4akvA01
3SYVA 4WPCA 2DYBA 3QNIA 4IKBA 1KMDA 1KQ6A 4IKDA 3HPCX 5C5BB 4AZ9A 2Q13A 3HPBA 4NSWA 3Q0KA 4AVMA 1O7KA 4PQOA 4DYLA 1I4LA 2L73A 2REAA 1I49A 2EFKA 5C5BA 3LUIA 2Z0VA 2WWEA 4HASA 2RAJA 2V6VA 3HAIA 3LLLA 3Q84A 4BNEA 3HAJA 3M3WA 2CSKA 2RAIA 4DCNC 4I1QA 1X04A 3HAHA 2RAKA 1ZWWA 1XTEA 2Q12A 4BGJA 1URUA 4H8SA 3ACOA 3SOGA 3OK8A 2EFLA 1Y2OA 1OCSA 2V0OA 1I4DA 2FICA 2CZOA 3IQ2A 1WDZA 2C08A 2YKTA 3P0CA 4P2JA 2REDA 4WPEA 4ON3A 3CAZA 1H6HA 1XTNA 3ABHA 4PZGA 2D1LA 3QWEA 1GD5A 4ATMA 2Z0NA 2X3VA 4OXWA 3PLTA 4AKVA 4P2IA 2V14A 1I4TA 2YPSA 3FOGA 2ETTA 3DYTA 3I2WA 2I4KA 4PQPA 4IKBB 2D4CA 3G9GA 2IWLX 2X3WA 1X03A 3QE6A 2ELBA 4NQIA 2Z0OA 4FZSA 2X3XA 1OCUA 2AR5A
chains in the Genus database with same CATH superfamily
3BVVA 4IKBA 4IKDA 2YL8A 4AZ9A 1QWUA 1O7KA 1QX1A 2L73A 1HTYA 3BVUA 3GI7A 3BVWA 3LUIA 2WWEA 2OZNB 2EWFA 3O3NB 3B53X 4R5KA 3BUQA 4JN4A 2WYIA 4D8JA 2Q12A 1GN9A 1URUA 1TQTA 1SU8A 3OK8A 3VEBA 4AZCA 3RV1A 2YL9A 1QWNA 2CZOA 1WDZA 3T49A 3VEAA 2REDA 4R5JA 4WPEA 4ON3A 3L3PA 2WYHA 1XTNA 1W9MA 2WINM 4PZGA 1GD5A 3EJPA 2Z0NA 4EZTA 2X3VA 4OXWA 4JL9A 3PLTA 2PMRA 1TQVA 4EZQA 4JWDA 1E2UA 2V14A 3D52A 3OWGA 4EZNA 3DX1A 4KIKA 4JWIA 4B9QA 2JNSA 3FOGA 3EJSA 3O3MB 1YWMA 4FZSA 1R34A 4G6QA 3SYVA 2DYBA 3QNIA 3CZSA 3A98A 4EZOA 3ER9B 1O7DB 3DPOA 3Q0KA 4AVMA 4EZXA 4PQOA 1I4LA 3BLBA 3ZEDA 2Z0VA 3LVTA 2OW7A 4HR1A 1O7DC 3Q84A 3I39X 2RAIA 2Z8YA 4I1QA 1X04A 3HAHA 1ZWWA 1SU7A 1XTEA 4HR1B 2ALWA 3ACOA 3BUPA 4AZBA 2N3KA 3ER8C 1SU6A 2YLAA 2OW6A 2QFFA 3DX4A 3KDRA 4HYBA 2OO2A 3KAVA 2PY6A 2YKTA 2ND0A 4P2JA 3EJTA 3I04A 4EZUA 4UDYX 4JWCA 3ABHA 3ERCC 3D4ZA 5E84A 4ATMA 2YI8A 2ND1A 4AKVA 1GNLA 3DDFA 4AZIA 5KBPA 2F7QA 1I4TA 3T48A 3OHXM 4R5IA 5FLEX 3I2WA 4IW0A 1HXKA 2F7OA 4PQPA 4AZHA 4PO2A 3LMFA 4IWQA 1X03A 1HWWA 3CKDA 2Z0OA 3CV5A 4AZGA 1OCUA 4R5LA 2RT6A 4JNEA 4WPCA 1UPXA 5C5BB 3B51X 2X5CA 2YIBA 1MJGA 1R5EA 3QA8A 1TQUA 3D2FA 2REAA 4EZSA 2F18A 4EZWA 1I49A 2EFKA 2JNKA 4IWOA 2F1AA 1DKXA 4IM0A 1DKZA 4F01A 3LLLA 3T47A 4BNEA 3M3WA 1SUFA 3RPMA 2GAFD 1E1DA 4EZYA 5FIGA 3L3OM 4H8SA 3C7NA 4AZ6A 3DX2A 4AZ5A 2EFLA 1Y2OA 4M0MA 2V0OA 1LQ7A 4EZZA 2FICA 4FZOA 1DKYA 2NCZA 4R5GA 3UITA 2C08A 4H6HA 3P0CA 2EX3B 1OA1A 3CAZA 4EZPA 2QKWA 3D4YA 3I01A 3BUBA 2D1LA 3QWEA 2O0I1 3EJUA 3RV0A 3DDGA 4P2IA 2OBMA 4AZ7A 4NPHA 4EZVA 1OAOA 2LM0A 4HY9A 2YL5A 2ZXQA 2ETTA 3DYTA 1PS3A 3EJQA 3B52X 4IKBB 3G9GA 1TQWA 2GA9D 3VKHA 2FYVA 4NQIA 3CZNA 4EZRA 2AR5A 2F7PA 1KMDA 1KQ6A 3HPCX 2Q13A 4FM3A 3HPBA 3DPPA 4NSWA 4DYLA 2KHOA 4F00A 3BUDA 2YIAA 4IM3A 5C5BA 2YL6A 4HASA 2RAJA 2V6VA 3HAIA 1ZYLA 3HAJA 2CSKA 3DX0A 4DCNC 1GNTA 4JWEA 2RAKA 1R33A 2QXLA 4AZCB 1TQSA 4IWPA 3CVRA 4BGJA 3FD9A 4H6IA 2YI9A 3SOGA 4UDXX 1OCSA 2GF4A 1E9VA 2LXYA 2F1BA 2YIVX 3BVTA 1I4DA 4FZPA 2OBLA 3QNJA 3IQ2A 4IM2A 4JNFA 3KAWA 4JLCA 1U00A 1H6HA 2MI7A 3BVXA 3T4AG 3DX3A 3BUIA 3O3OB 4E3CA 1OA0A 3F7WA 4KIKB 3D50A 3T46A 1JQKA 3D51A 3EJRA 2YPSA 2YLLA 2F7RA 3D2EA 5TKYA 2I4KA 2D4CA 2IWLX 2X3WA 3QE6A 2ELBA 2X3XA 3DPQA 4E81A
chains in the Genus database with same CATH topology
3SYVA 4WPCA 2DYBA 3QNIA 4IKBA 1KMDA 1KQ6A 4IKDA 3HPCX 5C5BB 4AZ9A 2Q13A 3HPBA 4NSWA 3Q0KA 4AVMA 1O7KA 4PQOA 4DYLA 1I4LA 2L73A 2REAA 1I49A 2EFKA 5C5BA 3LUIA 2Z0VA 2WWEA 4HASA 2RAJA 2V6VA 3HAIA 3LLLA 3Q84A 4BNEA 3HAJA 3M3WA 2CSKA 2RAIA 4DCNC 4I1QA 1X04A 3HAHA 2RAKA 1ZWWA 1XTEA 2Q12A 4BGJA 1URUA 4H8SA 3ACOA 3SOGA 3OK8A 2EFLA 1Y2OA 1OCSA 2V0OA 1I4DA 2FICA 2CZOA 3IQ2A 1WDZA 2C08A 2YKTA 3P0CA 4P2JA 2REDA 4WPEA 4ON3A 3CAZA 1H6HA 1XTNA 3ABHA 4PZGA 2D1LA 3QWEA 1GD5A 4ATMA 2Z0NA 2X3VA 4OXWA 3PLTA 4AKVA 4P2IA 2V14A 1I4TA 2YPSA 3FOGA 2ETTA 3DYTA 3I2WA 2I4KA 4PQPA 4IKBB 2D4CA 3G9GA 2IWLX 2X3WA 1X03A 3QE6A 2ELBA 4NQIA 2Z0OA 4FZSA 2X3XA 1OCUA 2AR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYV A;  4WPC A;  2DYB A;  3QNI A;  4IKB A;  1KMD A;  1KQ6 A;  4IKD A;  3HPC X;  5C5B B;  4AZ9 A;  2Q13 A;  3HPB A;  4NSW A;  3Q0K A;  4AVM A;  1O7K A;  4PQO A;  4DYL A;  1I4L A;  2L73 A;  2REA A;  1I49 A;  2EFK A;  5C5B A;  3LUI A;  2Z0V A;  2WWE A;  4HAS A;  2RAJ A;  2V6V A;  3HAI A;  3LLL A;  3Q84 A;  4BNE A;  3HAJ A;  3M3W A;  2CSK A;  2RAI A;  4DCN C;  4I1Q A;  1X04 A;  3HAH A;  2RAK A;  1ZWW A;  1XTE A;  2Q12 A;  4BGJ A;  1URU A;  4H8S A;  3ACO A;  3SOG A;  3OK8 A;  2EFL A;  1Y2O A;  1OCS A;  2V0O A;  1I4D A;  2FIC A;  2CZO A;  3IQ2 A;  1WDZ A;  2C08 A;  2YKT A;  3P0C A;  4P2J A;  2RED A;  4WPE A;  4ON3 A;  3CAZ A;  1H6H A;  1XTN A;  3ABH A;  4PZG A;  2D1L A;  3QWE A;  1GD5 A;  4ATM A;  2Z0N A;  2X3V A;  4OXW A;  3PLT A;  4AKV A;  4P2I A;  2V14 A;  1I4T A;  2YPS A;  3FOG A;  2ETT A;  3DYT A;  3I2W A;  2I4K A;  4PQP A;  4IKB B;  2D4C A;  3G9G A;  2IWL X;  2X3W A;  1X03 A;  3QE6 A;  2ELB A;  4NQI A;  2Z0O A;  4FZS A;  2X3X A;  1OCU A;  2AR5 A; 
#chains in the Genus database with same CATH topology
 3BVV A;  4IKB A;  4IKD A;  2YL8 A;  4AZ9 A;  1QWU A;  1O7K A;  1QX1 A;  2L73 A;  1HTY A;  3BVU A;  3GI7 A;  3BVW A;  3LUI A;  2WWE A;  2OZN B;  2EWF A;  3O3N B;  3B53 X;  4R5K A;  3BUQ A;  4JN4 A;  2WYI A;  4D8J A;  2Q12 A;  1GN9 A;  1URU A;  1TQT A;  1SU8 A;  3OK8 A;  3VEB A;  4AZC A;  3RV1 A;  2YL9 A;  1QWN A;  2CZO A;  1WDZ A;  3T49 A;  3VEA A;  2RED A;  4R5J A;  4WPE A;  4ON3 A;  3L3P A;  2WYH A;  1XTN A;  1W9M A;  2WIN M;  4PZG A;  1GD5 A;  3EJP A;  2Z0N A;  4EZT A;  2X3V A;  4OXW A;  4JL9 A;  3PLT A;  2PMR A;  1TQV A;  4EZQ A;  4JWD A;  1E2U A;  2V14 A;  3D52 A;  3OWG A;  4EZN A;  3DX1 A;  4KIK A;  4JWI A;  4B9Q A;  2JNS A;  3FOG A;  3EJS A;  3O3M B;  1YWM A;  4FZS A;  1R34 A;  4G6Q A;  3SYV A;  2DYB A;  3QNI A;  3CZS A;  3A98 A;  4EZO A;  3ER9 B;  1O7D B;  3DPO A;  3Q0K A;  4AVM A;  4EZX A;  4PQO A;  1I4L A;  3BLB A;  3ZED A;  2Z0V A;  3LVT A;  2OW7 A;  4HR1 A;  1O7D C;  3Q84 A;  3I39 X;  2RAI A;  2Z8Y A;  4I1Q A;  1X04 A;  3HAH A;  1ZWW A;  1SU7 A;  1XTE A;  4HR1 B;  2ALW A;  3ACO A;  3BUP A;  4AZB A;  2N3K A;  3ER8 C;  1SU6 A;  2YLA A;  2OW6 A;  2QFF A;  3DX4 A;  3KDR A;  4HYB A;  2OO2 A;  3KAV A;  2PY6 A;  2YKT A;  2ND0 A;  4P2J A;  3EJT A;  3I04 A;  4EZU A;  4UDY X;  4JWC A;  3ABH A;  3ERC C;  3D4Z A;  5E84 A;  4ATM A;  2YI8 A;  2ND1 A;  4AKV A;  1GNL A;  3DDF A;  4AZI A;  5KBP A;  2F7Q A;  1I4T A;  3T48 A;  3OHX M;  4R5I A;  5FLE X;  3I2W A;  4IW0 A;  1HXK A;  2F7O A;  4PQP A;  4AZH A;  4PO2 A;  3LMF A;  4IWQ A;  1X03 A;  1HWW A;  3CKD A;  2Z0O A;  3CV5 A;  4AZG A;  1OCU A;  4R5L A;  2RT6 A;  4JNE A;  4WPC A;  1UPX A;  5C5B B;  3B51 X;  2X5C A;  2YIB A;  1MJG A;  1R5E A;  3QA8 A;  1TQU A;  3D2F A;  2REA A;  4EZS A;  2F18 A;  4EZW A;  1I49 A;  2EFK A;  2JNK A;  4IWO A;  2F1A A;  1DKX A;  4IM0 A;  1DKZ A;  4F01 A;  3LLL A;  3T47 A;  4BNE A;  3M3W A;  1SUF A;  3RPM A;  2GAF D;  1E1D A;  4EZY A;  5FIG A;  3L3O M;  4H8S A;  3C7N A;  4AZ6 A;  3DX2 A;  4AZ5 A;  2EFL A;  1Y2O A;  4M0M A;  2V0O A;  1LQ7 A;  4EZZ A;  2FIC A;  4FZO A;  1DKY A;  2NCZ A;  4R5G A;  3UIT A;  2C08 A;  4H6H A;  3P0C A;  2EX3 B;  1OA1 A;  3CAZ A;  4EZP A;  2QKW A;  3D4Y A;  3I01 A;  3BUB A;  2D1L A;  3QWE A;  2O0I 1;  3EJU A;  3RV0 A;  3DDG A;  4P2I A;  2OBM A;  4AZ7 A;  4NPH A;  4EZV A;  1OAO A;  2LM0 A;  4HY9 A;  2YL5 A;  2ZXQ A;  2ETT A;  3DYT A;  1PS3 A;  3EJQ A;  3B52 X;  4IKB B;  3G9G A;  1TQW A;  2GA9 D;  3VKH A;  2FYV A;  4NQI A;  3CZN A;  4EZR A;  2AR5 A;  2F7P A;  1KMD A;  1KQ6 A;  3HPC X;  2Q13 A;  4FM3 A;  3HPB A;  3DPP A;  4NSW A;  4DYL A;  2KHO A;  4F00 A;  3BUD A;  2YIA A;  4IM3 A;  5C5B A;  2YL6 A;  4HAS A;  2RAJ A;  2V6V A;  3HAI A;  1ZYL A;  3HAJ A;  2CSK A;  3DX0 A;  4DCN C;  1GNT A;  4JWE A;  2RAK A;  1R33 A;  2QXL A;  4AZC B;  1TQS A;  4IWP A;  3CVR A;  4BGJ A;  3FD9 A;  4H6I A;  2YI9 A;  3SOG A;  4UDX X;  1OCS A;  2GF4 A;  1E9V A;  2LXY A;  2F1B A;  2YIV X;  3BVT A;  1I4D A;  4FZP A;  2OBL A;  3QNJ A;  3IQ2 A;  4IM2 A;  4JNF A;  3KAW A;  4JLC A;  1U00 A;  1H6H A;  2MI7 A;  3BVX A;  3T4A G;  3DX3 A;  3BUI A;  3O3O B;  4E3C A;  1OA0 A;  3F7W A;  4KIK B;  3D50 A;  3T46 A;  1JQK A;  3D51 A;  3EJR A;  2YPS A;  2YLL A;  2F7R A;  3D2E A;  5TKY A;  2I4K A;  2D4C A;  2IWL X;  2X3W A;  3QE6 A;  2ELB A;  2X3X A;  3DPQ A;  4E81 A; 
#chains in the Genus database with same CATH homology
 3SYV A;  4WPC A;  2DYB A;  3QNI A;  4IKB A;  1KMD A;  1KQ6 A;  4IKD A;  3HPC X;  5C5B B;  4AZ9 A;  2Q13 A;  3HPB A;  4NSW A;  3Q0K A;  4AVM A;  1O7K A;  4PQO A;  4DYL A;  1I4L A;  2L73 A;  2REA A;  1I49 A;  2EFK A;  5C5B A;  3LUI A;  2Z0V A;  2WWE A;  4HAS A;  2RAJ A;  2V6V A;  3HAI A;  3LLL A;  3Q84 A;  4BNE A;  3HAJ A;  3M3W A;  2CSK A;  2RAI A;  4DCN C;  4I1Q A;  1X04 A;  3HAH A;  2RAK A;  1ZWW A;  1XTE A;  2Q12 A;  4BGJ A;  1URU A;  4H8S A;  3ACO A;  3SOG A;  3OK8 A;  2EFL A;  1Y2O A;  1OCS A;  2V0O A;  1I4D A;  2FIC A;  2CZO A;  3IQ2 A;  1WDZ A;  2C08 A;  2YKT A;  3P0C A;  4P2J A;  2RED A;  4WPE A;  4ON3 A;  3CAZ A;  1H6H A;  1XTN A;  3ABH A;  4PZG A;  2D1L A;  3QWE A;  1GD5 A;  4ATM A;  2Z0N A;  2X3V A;  4OXW A;  3PLT A;  4AKV A;  4P2I A;  2V14 A;  1I4T A;  2YPS A;  3FOG A;  2ETT A;  3DYT A;  3I2W A;  2I4K A;  4PQP A;  4IKB B;  2D4C A;  3G9G A;  2IWL X;  2X3W A;  1X03 A;  3QE6 A;  2ELB A;  4NQI A;  2Z0O A;  4FZS A;  2X3X A;  1OCU A;  2AR5 A; 
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