1E88A

Solution structure of 6f11f22f2, a compact three-module fragment of the gelatin-binding domain of human fibronectin
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
160
structure length
160
Chain Sequence
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
source organism Homo sapiens
publication title The Hairpin Structure of the (6)F1(1)F2(2)F2 Fragment from Human Fibronectin Enhances Gelatin Binding
pubmed doi rcsb
molecule keywords FIBRONECTIN
total genus 15
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2000-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1e88A01
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1e88A02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1e88A03
1HFHA 4B2SA 2UWNA 4CSYA 3EJHA 5JPMG 1TPNA 3OXUD 3T5OA 2XRBA 3INBC 2JRAA 4KKDA 3NFPI 1OK2A 3GXEA 2W80A 3IX0A 2G7IA 3O8EB 4JHSA 1U5MA 1VVDA 5HYTB 4ZH1D 1GPZA 3KXVA 1SRZA 1E8BA 3IU3I 1TPGA 2BZMA 4K12A 4LOTA 1EAKA 1KS0A 3OP8A 1OJYA 1MD8A 5FO8C 2RKZA 4YNXA 4B2RA 1E5GA 1GHQB 1OJVA 3ERBA 4C16A 2V5OA 4AYDA 2JGXA 2FN2A 2XWJI 2YRAA 1O9AA 1QUBA 4IGDA 1PDCA 1GKGA 1FBRA 2RLQA 2QY0A 2JGWA 3MQLA 1E88A 1H04P 1H2QP 3TVJA 3ZD2A 1PPQA 3KZJA 1H8PA 2CG6A 2KRIA 1G4FA 1HFIA 1G4GA 2B5ID 4WJG2 1GKNA 2YBYA 1OJWA 1HCCA 1QGBA 2MCYA 3L89M 1CXWA 1H03P 2RKYA 4PZ5A 1MD7A 1H2PP 3OEDC 2IZ4A 1LY2A 1OK1A 2ERJA 2W81A 4AYIA 2WIIC 4F4OC 3M7PA 1NWVA 2XRDA 2XWBF 3ZRZA 2EHFA 1ELVA 1Q3XA 2LOJA 5HZPB 1L6JA 2RL0A 1VVCA 1C1ZA 1GXDA 2RLPA 1OK9A 5I0QB 2V8EA 4AYMA 3RJ3D 1OK3A 1TPMA 3R62A 2MCZA 2EC3A 4DJZA 4FXGG 1J7MA 3CALA 1ZJKA 4A5WB 1CK7A 5HYUB 2A55A 4LOSA 4MUCA 2XQWC 4ONTD 3ZD1A 5HYPA 1QO6A 3GOVA 3SW0X 1SS2A 1CKLA 2IZ3A 4J38B 2CKUA 4AYEA 1Z92B 2CG7A 1UOTP 2KMSA 2O39C
chains in the Genus database with same CATH superfamily
2X2ZA 1HFHA 4B2SA 2UWNA 4IJEA 4CSYA 3EJHA 5JPMG 5DN5A 4IBFA 1TPNA 2Y2LA 3OXUD 3ZLEA 2FFFB 1GOIA 1YU4A 4QNLA 3FGRA 2XRBA 3INBC 2JRAA 3T5OA 4KKDA 3L28A 4NYYA 3NFPI 3WD3A 4OJOA 1OK2A 4OUIA 1H0IA 3GXEA 2W80A 3IX0A 4NY2A 2G7IA 3O8EB 2UWXA 4JHSA 2Y2HA 3ZRZA 1E15A 1U5MA 1VVDA 5HYTB 2ZYCA 2I2LA 1W1PA 4NZ1A 3WD0A 1E6NA 4IBKA 4ZH1D 4IBEA 4IBIA 1GPZA 3F6KA 3KXVA 1SRZA 1E8BA 3IU3I 1TPGA 2BZMA 4Z2IA 1W1VA 4K12A 2D49A 4GHLA 4LOTA 1EAKA 4IBDA 2Y2KA 4IBGA 1KS0A 3OP8A 1OJYA 1O6IA 1MD8A 2Y8RA 3FKEA 5FO8C 2RKZA 4YIZA 4YNXA 4B2RA 1YUEA 1E5GA 2Y2NA 4Z2HA 3N3FA 1GHQB 1OJVA 1RLHA 3L27A 3ERBA 4C16A 1E6ZA 1OGBA 1YU1A 2V5OA 4NZ5A 4AYDA 4MB5A 3WSXA 2JGXA 1H0GA 1OGGA 3L2AA 3FGTA 2FN2A 2XWJI 2YRAA 1O9AA 1QUBA 3K3TA 4IGDA 1PDCA 3L26A 4NYUA 1FBRA 1GKGA 2RLQA 2QY0A 2JE5A 4APLA 5DN4A 3MQLA 1E88A 3WD2A 1YU0A 4Z2KA 4MB3A 1H04P 1H2QP 2JGWA 3TVJA 3ZD2A 1PPQA 3WX7A 3KZJA 4N7EA 2Y2GA 1H8PA 2CG6A 2KRIA 1G4FA 1HFIA 1G4GA 2IOUA 2B5ID 4WJG2 1GKNA 4TX8A 3NJAA 4GHAA 2YBYA 3KS4A 1OJWA 3WD1A 3OEDC 1HCCA 1QGBA 3HONA 2JCHA 2MCYA 2RTSA 4Z2LA 1CXWA 3L89M 1H03P 2RKYA 4PZ5A 1MD7A 1H2PP 4PO7A 2BG1A 4Z2GA 1YU2A 1E6PA 1GPFA 2Y2IA 4OJ5A 1YU3A 2Y2QA 3KS8A 1LY2A 1OK1A 1UOTP 4MB4A 2ERJA 2IZ4A 2W81A 2WIIC 4AYIA 1W1YA 3M7PA 1NWVA 4F4OC 1UR9A 2Y2JA 2XRDA 2XWBF 2EHFA 1ELVA 1Q3XA 2LOJA 4HMEA 1L6JA 2RL0A 1VVCA 5HZPB 1C1ZA 1GXDA 1ED7A 1UR8A 2RLPA 4HMCA 1OK9A 5I0QB 2V8EA 4AYMA 3RJ3D 4IBBA 1OK3A 1TPMA 4OJLA 2Y8TA 3L25A 3R62A 2Y2MA 2MCZA 3L29A 2EC3A 2XD5A 3CI0J 5BPVA 3WSYA 3VWOA 4FXGG 4IJFA 1J7MA 4DJZA 3CALA 4LG2A 1ZJKA 4GH9A 4IBCA 2Y2PA 2XD1A 4OJPA 4A5WB 4OJ6A 1CK7A 4Z2JA 5HYUB 4NZ4A 1E6RA 4BWCA 3WD4A 2A55A 1AIWA 4LOSA 4MUCA 2XQWC 4ONTD 3ZD1A 5HYPA 1QO6A 3HSHA 3GOVA 3SW0X 1SS2A 1CKLA 2IZ3A 2Y8SA 4HMDA 4J38B 2CKUA 4AYEA 3ZLDA 4IBJA 1Z92B 1W1TA 2CG7A 4MSLA 2KMSA 2O39C 2Y2OA 4NZ3A
chains in the Genus database with same CATH topology
1HFHA 4B2SA 2UWNA 4CSYA 3EJHA 5JPMG 1TPNA 3OXUD 3T5OA 2XRBA 3INBC 2JRAA 4KKDA 3NFPI 1OK2A 3GXEA 2W80A 3IX0A 2G7IA 3O8EB 4JHSA 1U5MA 1VVDA 5HYTB 4ZH1D 1GPZA 3KXVA 1SRZA 1E8BA 3IU3I 1TPGA 2BZMA 4K12A 4LOTA 1EAKA 1KS0A 3OP8A 1OJYA 1MD8A 5FO8C 2RKZA 4YNXA 4B2RA 1E5GA 1GHQB 1OJVA 3ERBA 4C16A 2V5OA 4AYDA 2JGXA 2FN2A 2XWJI 2YRAA 1O9AA 1QUBA 4IGDA 1PDCA 1GKGA 1FBRA 2RLQA 2QY0A 2JGWA 3MQLA 1E88A 1H04P 1H2QP 3TVJA 3ZD2A 1PPQA 3KZJA 1H8PA 2CG6A 2KRIA 1G4FA 1HFIA 1G4GA 2B5ID 4WJG2 1GKNA 2YBYA 1OJWA 1HCCA 1QGBA 2MCYA 3L89M 1CXWA 1H03P 2RKYA 4PZ5A 1MD7A 1H2PP 3OEDC 2IZ4A 1LY2A 1OK1A 2ERJA 2W81A 4AYIA 2WIIC 4F4OC 3M7PA 1NWVA 2XRDA 2XWBF 3ZRZA 2EHFA 1ELVA 1Q3XA 2LOJA 5HZPB 1L6JA 2RL0A 1VVCA 1C1ZA 1GXDA 2RLPA 1OK9A 5I0QB 2V8EA 4AYMA 3RJ3D 1OK3A 1TPMA 3R62A 2MCZA 2EC3A 4DJZA 4FXGG 1J7MA 3CALA 1ZJKA 4A5WB 1CK7A 5HYUB 2A55A 4LOSA 4MUCA 2XQWC 4ONTD 3ZD1A 5HYPA 1QO6A 3GOVA 3SW0X 1SS2A 1CKLA 2IZ3A 4J38B 2CKUA 4AYEA 1Z92B 2CG7A 1UOTP 2KMSA 2O39C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HFH A;  4B2S A;  2UWN A;  4CSY A;  3EJH A;  5JPM G;  1TPN A;  3OXU D;  3T5O A;  2XRB A;  3INB C;  2JRA A;  4KKD A;  3NFP I;  1OK2 A;  3GXE A;  2W80 A;  3IX0 A;  2G7I A;  3O8E B;  4JHS A;  1U5M A;  1VVD A;  5HYT B;  4ZH1 D;  1GPZ A;  3KXV A;  1SRZ A;  1E8B A;  3IU3 I;  1TPG A;  2BZM A;  4K12 A;  4LOT A;  1EAK A;  1KS0 A;  3OP8 A;  1OJY A;  1MD8 A;  5FO8 C;  2RKZ A;  4YNX A;  4B2R A;  1E5G A;  1GHQ B;  1OJV A;  3ERB A;  4C16 A;  2V5O A;  4AYD A;  2JGX A;  2FN2 A;  2XWJ I;  2YRA A;  1O9A A;  1QUB A;  4IGD A;  1PDC A;  1GKG A;  1FBR A;  2RLQ A;  2QY0 A;  2JGW A;  3MQL A;  1E88 A;  1H04 P;  1H2Q P;  3TVJ A;  3ZD2 A;  1PPQ A;  3KZJ A;  1H8P A;  2CG6 A;  2KRI A;  1G4F A;  1HFI A;  1G4G A;  2B5I D;  4WJG 2;  1GKN A;  2YBY A;  1OJW A;  1HCC A;  1QGB A;  2MCY A;  3L89 M;  1CXW A;  1H03 P;  2RKY A;  4PZ5 A;  1MD7 A;  1H2P P;  3OED C;  2IZ4 A;  1LY2 A;  1OK1 A;  2ERJ A;  2W81 A;  4AYI A;  2WII C;  4F4O C;  3M7P A;  1NWV A;  2XRD A;  2XWB F;  3ZRZ A;  2EHF A;  1ELV A;  1Q3X A;  2LOJ A;  5HZP B;  1L6J A;  2RL0 A;  1VVC A;  1C1Z A;  1GXD A;  2RLP A;  1OK9 A;  5I0Q B;  2V8E A;  4AYM A;  3RJ3 D;  1OK3 A;  1TPM A;  3R62 A;  2MCZ A;  2EC3 A;  4DJZ A;  4FXG G;  1J7M A;  3CAL A;  1ZJK A;  4A5W B;  1CK7 A;  5HYU B;  2A55 A;  4LOS A;  4MUC A;  2XQW C;  4ONT D;  3ZD1 A;  5HYP A;  1QO6 A;  3GOV A;  3SW0 X;  1SS2 A;  1CKL A;  2IZ3 A;  4J38 B;  2CKU A;  4AYE A;  1Z92 B;  2CG7 A;  1UOT P;  2KMS A;  2O39 C; 
#chains in the Genus database with same CATH topology
 2X2Z A;  1HFH A;  4B2S A;  2UWN A;  4IJE A;  4CSY A;  3EJH A;  5JPM G;  5DN5 A;  4IBF A;  1TPN A;  2Y2L A;  3OXU D;  3ZLE A;  2FFF B;  1GOI A;  1YU4 A;  4QNL A;  3FGR A;  2XRB A;  3INB C;  2JRA A;  3T5O A;  4KKD A;  3L28 A;  4NYY A;  3NFP I;  3WD3 A;  4OJO A;  1OK2 A;  4OUI A;  1H0I A;  3GXE A;  2W80 A;  3IX0 A;  4NY2 A;  2G7I A;  3O8E B;  2UWX A;  4JHS A;  2Y2H A;  3ZRZ A;  1E15 A;  1U5M A;  1VVD A;  5HYT B;  2ZYC A;  2I2L A;  1W1P A;  4NZ1 A;  3WD0 A;  1E6N A;  4IBK A;  4ZH1 D;  4IBE A;  4IBI A;  1GPZ A;  3F6K A;  3KXV A;  1SRZ A;  1E8B A;  3IU3 I;  1TPG A;  2BZM A;  4Z2I A;  1W1V A;  4K12 A;  2D49 A;  4GHL A;  4LOT A;  1EAK A;  4IBD A;  2Y2K A;  4IBG A;  1KS0 A;  3OP8 A;  1OJY A;  1O6I A;  1MD8 A;  2Y8R A;  3FKE A;  5FO8 C;  2RKZ A;  4YIZ A;  4YNX A;  4B2R A;  1YUE A;  1E5G A;  2Y2N A;  4Z2H A;  3N3F A;  1GHQ B;  1OJV A;  1RLH A;  3L27 A;  3ERB A;  4C16 A;  1E6Z A;  1OGB A;  1YU1 A;  2V5O A;  4NZ5 A;  4AYD A;  4MB5 A;  3WSX A;  2JGX A;  1H0G A;  1OGG A;  3L2A A;  3FGT A;  2FN2 A;  2XWJ I;  2YRA A;  1O9A A;  1QUB A;  3K3T A;  4IGD A;  1PDC A;  3L26 A;  4NYU A;  1FBR A;  1GKG A;  2RLQ A;  2QY0 A;  2JE5 A;  4APL A;  5DN4 A;  3MQL A;  1E88 A;  3WD2 A;  1YU0 A;  4Z2K A;  4MB3 A;  1H04 P;  1H2Q P;  2JGW A;  3TVJ A;  3ZD2 A;  1PPQ A;  3WX7 A;  3KZJ A;  4N7E A;  2Y2G A;  1H8P A;  2CG6 A;  2KRI A;  1G4F A;  1HFI A;  1G4G A;  2IOU A;  2B5I D;  4WJG 2;  1GKN A;  4TX8 A;  3NJA A;  4GHA A;  2YBY A;  3KS4 A;  1OJW A;  3WD1 A;  3OED C;  1HCC A;  1QGB A;  3HON A;  2JCH A;  2MCY A;  2RTS A;  4Z2L A;  1CXW A;  3L89 M;  1H03 P;  2RKY A;  4PZ5 A;  1MD7 A;  1H2P P;  4PO7 A;  2BG1 A;  4Z2G A;  1YU2 A;  1E6P A;  1GPF A;  2Y2I A;  4OJ5 A;  1YU3 A;  2Y2Q A;  3KS8 A;  1LY2 A;  1OK1 A;  1UOT P;  4MB4 A;  2ERJ A;  2IZ4 A;  2W81 A;  2WII C;  4AYI A;  1W1Y A;  3M7P A;  1NWV A;  4F4O C;  1UR9 A;  2Y2J A;  2XRD A;  2XWB F;  2EHF A;  1ELV A;  1Q3X A;  2LOJ A;  4HME A;  1L6J A;  2RL0 A;  1VVC A;  5HZP B;  1C1Z A;  1GXD A;  1ED7 A;  1UR8 A;  2RLP A;  4HMC A;  1OK9 A;  5I0Q B;  2V8E A;  4AYM A;  3RJ3 D;  4IBB A;  1OK3 A;  1TPM A;  4OJL A;  2Y8T A;  3L25 A;  3R62 A;  2Y2M A;  2MCZ A;  3L29 A;  2EC3 A;  2XD5 A;  3CI0 J;  5BPV A;  3WSY A;  3VWO A;  4FXG G;  4IJF A;  1J7M A;  4DJZ A;  3CAL A;  4LG2 A;  1ZJK A;  4GH9 A;  4IBC A;  2Y2P A;  2XD1 A;  4OJP A;  4A5W B;  4OJ6 A;  1CK7 A;  4Z2J A;  5HYU B;  4NZ4 A;  1E6R A;  4BWC A;  3WD4 A;  2A55 A;  1AIW A;  4LOS A;  4MUC A;  2XQW C;  4ONT D;  3ZD1 A;  5HYP A;  1QO6 A;  3HSH A;  3GOV A;  3SW0 X;  1SS2 A;  1CKL A;  2IZ3 A;  2Y8S A;  4HMD A;  4J38 B;  2CKU A;  4AYE A;  3ZLD A;  4IBJ A;  1Z92 B;  1W1T A;  2CG7 A;  4MSL A;  2KMS A;  2O39 C;  2Y2O A;  4NZ3 A; 
#chains in the Genus database with same CATH homology
 1HFH A;  4B2S A;  2UWN A;  4CSY A;  3EJH A;  5JPM G;  1TPN A;  3OXU D;  3T5O A;  2XRB A;  3INB C;  2JRA A;  4KKD A;  3NFP I;  1OK2 A;  3GXE A;  2W80 A;  3IX0 A;  2G7I A;  3O8E B;  4JHS A;  1U5M A;  1VVD A;  5HYT B;  4ZH1 D;  1GPZ A;  3KXV A;  1SRZ A;  1E8B A;  3IU3 I;  1TPG A;  2BZM A;  4K12 A;  4LOT A;  1EAK A;  1KS0 A;  3OP8 A;  1OJY A;  1MD8 A;  5FO8 C;  2RKZ A;  4YNX A;  4B2R A;  1E5G A;  1GHQ B;  1OJV A;  3ERB A;  4C16 A;  2V5O A;  4AYD A;  2JGX A;  2FN2 A;  2XWJ I;  2YRA A;  1O9A A;  1QUB A;  4IGD A;  1PDC A;  1GKG A;  1FBR A;  2RLQ A;  2QY0 A;  2JGW A;  3MQL A;  1E88 A;  1H04 P;  1H2Q P;  3TVJ A;  3ZD2 A;  1PPQ A;  3KZJ A;  1H8P A;  2CG6 A;  2KRI A;  1G4F A;  1HFI A;  1G4G A;  2B5I D;  4WJG 2;  1GKN A;  2YBY A;  1OJW A;  1HCC A;  1QGB A;  2MCY A;  3L89 M;  1CXW A;  1H03 P;  2RKY A;  4PZ5 A;  1MD7 A;  1H2P P;  3OED C;  2IZ4 A;  1LY2 A;  1OK1 A;  2ERJ A;  2W81 A;  4AYI A;  2WII C;  4F4O C;  3M7P A;  1NWV A;  2XRD A;  2XWB F;  3ZRZ A;  2EHF A;  1ELV A;  1Q3X A;  2LOJ A;  5HZP B;  1L6J A;  2RL0 A;  1VVC A;  1C1Z A;  1GXD A;  2RLP A;  1OK9 A;  5I0Q B;  2V8E A;  4AYM A;  3RJ3 D;  1OK3 A;  1TPM A;  3R62 A;  2MCZ A;  2EC3 A;  4DJZ A;  4FXG G;  1J7M A;  3CAL A;  1ZJK A;  4A5W B;  1CK7 A;  5HYU B;  2A55 A;  4LOS A;  4MUC A;  2XQW C;  4ONT D;  3ZD1 A;  5HYP A;  1QO6 A;  3GOV A;  3SW0 X;  1SS2 A;  1CKL A;  2IZ3 A;  4J38 B;  2CKU A;  4AYE A;  1Z92 B;  2CG7 A;  1UOT P;  2KMS A;  2O39 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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