1E88A

Solution structure of 6f11f22f2, a compact three-module fragment of the gelatin-binding domain of human fibronectin
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
160
structure length
160
Chain Sequence
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
source organism Homo sapiens
publication title The Hairpin Structure of the (6)F1(1)F2(2)F2 Fragment from Human Fibronectin Enhances Gelatin Binding
pubmed doi rcsb
molecule keywords FIBRONECTIN
total genus 15
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2000-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1e88A01
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1e88A02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1e88A03
3NFPI 3GXEA 1GKGA 1E5GA 2YRAA 2JRAA 4K12A 1OK3A 1LY2A 2V5OA 2RL0A 4FXGG 4AYMA 2V8EA 1OK1A 1SRZA 3GOVA 2B5ID 1CXWA 2JGXA 4ONTD 4AYDA 2EHFA 2RLPA 1KS0A 3M7PA 1H04P 3OEDC 5HYUB 5HYTB 4B2RA 1PPQA 1SS2A 2ERJA 1G4GA 4C16A 1TPMA 1CK7A 1H2PP 4PZ5A 4LOSA 3R62A 1C1ZA 2RLQA 2WIIC 1HFIA 1OK9A 2W81A 3IU3I 3KZJA 4JHSA 4KKDA 1HFHA 2IZ4A 3OXUD 4ZH1D 2XWBF 4J38B 2EC3A 2G7IA 2CG7A 5FO8C 3IX0A 3KXVA 3ZRZA 4YNXA 2XQWC 1GPZA 1OJYA 1ZJKA 1J7MA 2RKYA 2CKUA 1GKNA 2UWNA 4B2SA 1CKLA 2CG6A 4LOTA 3T5OA 2W80A 3O8EB 3INBC 1UOTP 5HZPB 1NWVA 4AYIA 4A5WB 1GHQB 1Z92B 1U5MA 2IZ3A 3MQLA 2JGWA 1FBRA 2KMSA 2KRIA 3ZD1A 2A55A 2YBYA 1O9AA 4IGDA 1L6JA 1QGBA 3ERBA 5HYPA 5JPMG 1QO6A 2RKZA 1ELVA 2FN2A 3RJ3D 1G4FA 1OK2A 2MCYA 2MCZA 3ZD2A 2XRDA 4AYEA 1GXDA 2LOJA 1E8BA 1H8PA 1OJWA 4CSYA 1H2QP 1E88A 1HCCA 1MD8A 2QY0A 1OJVA 4WJG2 1H03P 5I0QB 1TPGA 3EJHA 3TVJA 1TPNA 2XRBA 4MUCA 1PDCA 3L89M 1EAKA 3OP8A 1VVDA 4DJZA 2O39C 4F4OC 1MD7A 1QUBA 3SW0X 1VVCA 2XWJI 2BZMA 3CALA 1Q3XA
chains in the Genus database with same CATH superfamily
2XD5A 1E6PA 4NZ3A 3NFPI 3GXEA 3CALA 3KS8A 1GKGA 1E5GA 2YRAA 4Z2JA 3L29A 2JRAA 4K12A 3FKEA 1OK3A 4NY2A 4QNLA 1LY2A 3L25A 2V5OA 2Y2OA 3WD2A 2Y2PA 2RL0A 2ZYCA 4FXGG 4AYMA 3N3FA 2Y2IA 2V8EA 3K3TA 1OK1A 1SRZA 3GOVA 2B5ID 1CXWA 1UR8A 1YU4A 1W1TA 2IOUA 2Y2QA 3L2AA 1E6NA 2JGXA 4HMDA 4ONTD 3ZLEA 4AYDA 2EHFA 2RLPA 1KS0A 4OUIA 2JCHA 3M7PA 1YU0A 4NZ4A 1H04P 3OEDC 5HYUB 5HYTB 2X2ZA 2Y2GA 4B2RA 1PPQA 1SS2A 2ERJA 1G4GA 4C16A 3WX7A 1CK7A 1H2PP 1TPMA 4PZ5A 4OJPA 4LOSA 2UWXA 1C1ZA 3R62A 2RLQA 1E6RA 1RLHA 4NZ1A 1HFIA 1OK9A 1W1YA 4IBGA 1OGBA 2W81A 2WIIC 4IBBA 3IU3I 3CI0J 4PO7A 3FGRA 5DN5A 3L26A 3F6KA 3KZJA 4N7EA 4LG2A 1ED7A 4YIZA 4JHSA 1E15A 3ZD1A 4KKDA 1HFHA 4MB4A 2IZ4A 3OXUD 4NYUA 4ZH1D 4GHLA 4NYYA 3HONA 1YUEA 2FFFB 2EC3A 2G7IA 2JGWA 2XWBF 4J38B 2Y2JA 1E6ZA 4Z2IA 2CG7A 2I2LA 5FO8C 3IX0A 3KXVA 3ZRZA 4Z2GA 5BPVA 2XQWC 4YNXA 1GPZA 2Y8TA 1OJYA 4APLA 4IBJA 2Y8RA 2Y2NA 1J7MA 1ZJKA 2CKUA 2RKYA 1GKNA 2UWNA 4B2SA 5DN4A 1CKLA 4MSLA 2CG6A 4LOTA 3T5OA 2BG1A 4NZ5A 2W80A 2Y2HA 3INBC 3O8EB 1UOTP 1H0GA 4BWCA 4HMEA 5HZPB 4HMCA 3L28A 1NWVA 4MB5A 3WD3A 3WD1A 4AYIA 4A5WB 4OJLA 1GHQB 1U5MA 1Z92B 3MQLA 2IZ3A 4OJ6A 4Z2HA 4GHAA 1FBRA 4IBKA 2A55A 2KRIA 2YBYA 2D49A 1O9AA 1O6IA 2Y2LA 4IGDA 1L6JA 4GH9A 1QGBA 3ERBA 3ZLDA 5HYPA 5JPMG 1QO6A 2RKZA 1YU2A 3WD0A 1ELVA 2FN2A 2RTSA 3RJ3D 1GPFA 1OK2A 4OJ5A 3WSXA 1G4FA 4Z2LA 2MCYA 2MCZA 2XRDA 3VWOA 3ZD2A 4AYEA 1GXDA 2LOJA 3FGTA 1E8BA 1H8PA 4MB3A 3WD4A 1OJWA 4CSYA 1H2QP 1E88A 1HCCA 3HSHA 1MD8A 4Z2KA 2QY0A 1OJVA 3NJAA 4IBDA 4WJG2 1UR9A 1H0IA 1W1VA 1H03P 4IBIA 5I0QB 1TPGA 3EJHA 3TVJA 1TPNA 2XRBA 2Y2KA 1GOIA 1AIWA 1PDCA 3L89M 4MUCA 3WSYA 4IBCA 4IJEA 2Y2MA 2JE5A 1EAKA 3OP8A 1VVDA 3L27A 2O39C 4IBFA 4DJZA 1MD7A 4F4OC 4IBEA 1QUBA 3SW0X 4OJOA 2XD1A 2Y8SA 4TX8A 4IJFA 1VVCA 2XWJI 1YU3A 1YU1A 1W1PA 2BZMA 2KMSA 1OGGA 3KS4A 1Q3XA
chains in the Genus database with same CATH topology
3NFPI 3GXEA 1GKGA 1E5GA 2YRAA 2JRAA 4K12A 1OK3A 1LY2A 2V5OA 2RL0A 4FXGG 4AYMA 2V8EA 1OK1A 1SRZA 3GOVA 2B5ID 1CXWA 2JGXA 4ONTD 4AYDA 2EHFA 2RLPA 1KS0A 3M7PA 1H04P 3OEDC 5HYUB 5HYTB 4B2RA 1PPQA 1SS2A 2ERJA 1G4GA 4C16A 1TPMA 1CK7A 1H2PP 4PZ5A 4LOSA 3R62A 1C1ZA 2RLQA 2WIIC 1HFIA 1OK9A 2W81A 3IU3I 3KZJA 4JHSA 4KKDA 1HFHA 2IZ4A 3OXUD 4ZH1D 2XWBF 4J38B 2EC3A 2G7IA 2CG7A 5FO8C 3IX0A 3KXVA 3ZRZA 4YNXA 2XQWC 1GPZA 1OJYA 1ZJKA 1J7MA 2RKYA 2CKUA 1GKNA 2UWNA 4B2SA 1CKLA 2CG6A 4LOTA 3T5OA 2W80A 3O8EB 3INBC 1UOTP 5HZPB 1NWVA 4AYIA 4A5WB 1GHQB 1Z92B 1U5MA 2IZ3A 3MQLA 2JGWA 1FBRA 2KMSA 2KRIA 3ZD1A 2A55A 2YBYA 1O9AA 4IGDA 1L6JA 1QGBA 3ERBA 5HYPA 5JPMG 1QO6A 2RKZA 1ELVA 2FN2A 3RJ3D 1G4FA 1OK2A 2MCYA 2MCZA 3ZD2A 2XRDA 4AYEA 1GXDA 2LOJA 1E8BA 1H8PA 1OJWA 4CSYA 1H2QP 1E88A 1HCCA 1MD8A 2QY0A 1OJVA 4WJG2 1H03P 5I0QB 1TPGA 3EJHA 3TVJA 1TPNA 2XRBA 4MUCA 1PDCA 3L89M 1EAKA 3OP8A 1VVDA 4DJZA 2O39C 4F4OC 1MD7A 1QUBA 3SW0X 1VVCA 2XWJI 2BZMA 3CALA 1Q3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NFP I;  3GXE A;  1GKG A;  1E5G A;  2YRA A;  2JRA A;  4K12 A;  1OK3 A;  1LY2 A;  2V5O A;  2RL0 A;  4FXG G;  4AYM A;  2V8E A;  1OK1 A;  1SRZ A;  3GOV A;  2B5I D;  1CXW A;  2JGX A;  4ONT D;  4AYD A;  2EHF A;  2RLP A;  1KS0 A;  3M7P A;  1H04 P;  3OED C;  5HYU B;  5HYT B;  4B2R A;  1PPQ A;  1SS2 A;  2ERJ A;  1G4G A;  4C16 A;  1TPM A;  1CK7 A;  1H2P P;  4PZ5 A;  4LOS A;  3R62 A;  1C1Z A;  2RLQ A;  2WII C;  1HFI A;  1OK9 A;  2W81 A;  3IU3 I;  3KZJ A;  4JHS A;  4KKD A;  1HFH A;  2IZ4 A;  3OXU D;  4ZH1 D;  2XWB F;  4J38 B;  2EC3 A;  2G7I A;  2CG7 A;  5FO8 C;  3IX0 A;  3KXV A;  3ZRZ A;  4YNX A;  2XQW C;  1GPZ A;  1OJY A;  1ZJK A;  1J7M A;  2RKY A;  2CKU A;  1GKN A;  2UWN A;  4B2S A;  1CKL A;  2CG6 A;  4LOT A;  3T5O A;  2W80 A;  3O8E B;  3INB C;  1UOT P;  5HZP B;  1NWV A;  4AYI A;  4A5W B;  1GHQ B;  1Z92 B;  1U5M A;  2IZ3 A;  3MQL A;  2JGW A;  1FBR A;  2KMS A;  2KRI A;  3ZD1 A;  2A55 A;  2YBY A;  1O9A A;  4IGD A;  1L6J A;  1QGB A;  3ERB A;  5HYP A;  5JPM G;  1QO6 A;  2RKZ A;  1ELV A;  2FN2 A;  3RJ3 D;  1G4F A;  1OK2 A;  2MCY A;  2MCZ A;  3ZD2 A;  2XRD A;  4AYE A;  1GXD A;  2LOJ A;  1E8B A;  1H8P A;  1OJW A;  4CSY A;  1H2Q P;  1E88 A;  1HCC A;  1MD8 A;  2QY0 A;  1OJV A;  4WJG 2;  1H03 P;  5I0Q B;  1TPG A;  3EJH A;  3TVJ A;  1TPN A;  2XRB A;  4MUC A;  1PDC A;  3L89 M;  1EAK A;  3OP8 A;  1VVD A;  4DJZ A;  2O39 C;  4F4O C;  1MD7 A;  1QUB A;  3SW0 X;  1VVC A;  2XWJ I;  2BZM A;  3CAL A;  1Q3X A; 
#chains in the Genus database with same CATH topology
 2XD5 A;  1E6P A;  4NZ3 A;  3NFP I;  3GXE A;  3CAL A;  3KS8 A;  1GKG A;  1E5G A;  2YRA A;  4Z2J A;  3L29 A;  2JRA A;  4K12 A;  3FKE A;  1OK3 A;  4NY2 A;  4QNL A;  1LY2 A;  3L25 A;  2V5O A;  2Y2O A;  3WD2 A;  2Y2P A;  2RL0 A;  2ZYC A;  4FXG G;  4AYM A;  3N3F A;  2Y2I A;  2V8E A;  3K3T A;  1OK1 A;  1SRZ A;  3GOV A;  2B5I D;  1CXW A;  1UR8 A;  1YU4 A;  1W1T A;  2IOU A;  2Y2Q A;  3L2A A;  1E6N A;  2JGX A;  4HMD A;  4ONT D;  3ZLE A;  4AYD A;  2EHF A;  2RLP A;  1KS0 A;  4OUI A;  2JCH A;  3M7P A;  1YU0 A;  4NZ4 A;  1H04 P;  3OED C;  5HYU B;  5HYT B;  2X2Z A;  2Y2G A;  4B2R A;  1PPQ A;  1SS2 A;  2ERJ A;  1G4G A;  4C16 A;  3WX7 A;  1CK7 A;  1H2P P;  1TPM A;  4PZ5 A;  4OJP A;  4LOS A;  2UWX A;  1C1Z A;  3R62 A;  2RLQ A;  1E6R A;  1RLH A;  4NZ1 A;  1HFI A;  1OK9 A;  1W1Y A;  4IBG A;  1OGB A;  2W81 A;  2WII C;  4IBB A;  3IU3 I;  3CI0 J;  4PO7 A;  3FGR A;  5DN5 A;  3L26 A;  3F6K A;  3KZJ A;  4N7E A;  4LG2 A;  1ED7 A;  4YIZ A;  4JHS A;  1E15 A;  3ZD1 A;  4KKD A;  1HFH A;  4MB4 A;  2IZ4 A;  3OXU D;  4NYU A;  4ZH1 D;  4GHL A;  4NYY A;  3HON A;  1YUE A;  2FFF B;  2EC3 A;  2G7I A;  2JGW A;  2XWB F;  4J38 B;  2Y2J A;  1E6Z A;  4Z2I A;  2CG7 A;  2I2L A;  5FO8 C;  3IX0 A;  3KXV A;  3ZRZ A;  4Z2G A;  5BPV A;  2XQW C;  4YNX A;  1GPZ A;  2Y8T A;  1OJY A;  4APL A;  4IBJ A;  2Y8R A;  2Y2N A;  1J7M A;  1ZJK A;  2CKU A;  2RKY A;  1GKN A;  2UWN A;  4B2S A;  5DN4 A;  1CKL A;  4MSL A;  2CG6 A;  4LOT A;  3T5O A;  2BG1 A;  4NZ5 A;  2W80 A;  2Y2H A;  3INB C;  3O8E B;  1UOT P;  1H0G A;  4BWC A;  4HME A;  5HZP B;  4HMC A;  3L28 A;  1NWV A;  4MB5 A;  3WD3 A;  3WD1 A;  4AYI A;  4A5W B;  4OJL A;  1GHQ B;  1U5M A;  1Z92 B;  3MQL A;  2IZ3 A;  4OJ6 A;  4Z2H A;  4GHA A;  1FBR A;  4IBK A;  2A55 A;  2KRI A;  2YBY A;  2D49 A;  1O9A A;  1O6I A;  2Y2L A;  4IGD A;  1L6J A;  4GH9 A;  1QGB A;  3ERB A;  3ZLD A;  5HYP A;  5JPM G;  1QO6 A;  2RKZ A;  1YU2 A;  3WD0 A;  1ELV A;  2FN2 A;  2RTS A;  3RJ3 D;  1GPF A;  1OK2 A;  4OJ5 A;  3WSX A;  1G4F A;  4Z2L A;  2MCY A;  2MCZ A;  2XRD A;  3VWO A;  3ZD2 A;  4AYE A;  1GXD A;  2LOJ A;  3FGT A;  1E8B A;  1H8P A;  4MB3 A;  3WD4 A;  1OJW A;  4CSY A;  1H2Q P;  1E88 A;  1HCC A;  3HSH A;  1MD8 A;  4Z2K A;  2QY0 A;  1OJV A;  3NJA A;  4IBD A;  4WJG 2;  1UR9 A;  1H0I A;  1W1V A;  1H03 P;  4IBI A;  5I0Q B;  1TPG A;  3EJH A;  3TVJ A;  1TPN A;  2XRB A;  2Y2K A;  1GOI A;  1AIW A;  1PDC A;  3L89 M;  4MUC A;  3WSY A;  4IBC A;  4IJE A;  2Y2M A;  2JE5 A;  1EAK A;  3OP8 A;  1VVD A;  3L27 A;  2O39 C;  4IBF A;  4DJZ A;  1MD7 A;  4F4O C;  4IBE A;  1QUB A;  3SW0 X;  4OJO A;  2XD1 A;  2Y8S A;  4TX8 A;  4IJF A;  1VVC A;  2XWJ I;  1YU3 A;  1YU1 A;  1W1P A;  2BZM A;  2KMS A;  1OGG A;  3KS4 A;  1Q3X A; 
#chains in the Genus database with same CATH homology
 3NFP I;  3GXE A;  1GKG A;  1E5G A;  2YRA A;  2JRA A;  4K12 A;  1OK3 A;  1LY2 A;  2V5O A;  2RL0 A;  4FXG G;  4AYM A;  2V8E A;  1OK1 A;  1SRZ A;  3GOV A;  2B5I D;  1CXW A;  2JGX A;  4ONT D;  4AYD A;  2EHF A;  2RLP A;  1KS0 A;  3M7P A;  1H04 P;  3OED C;  5HYU B;  5HYT B;  4B2R A;  1PPQ A;  1SS2 A;  2ERJ A;  1G4G A;  4C16 A;  1TPM A;  1CK7 A;  1H2P P;  4PZ5 A;  4LOS A;  3R62 A;  1C1Z A;  2RLQ A;  2WII C;  1HFI A;  1OK9 A;  2W81 A;  3IU3 I;  3KZJ A;  4JHS A;  4KKD A;  1HFH A;  2IZ4 A;  3OXU D;  4ZH1 D;  2XWB F;  4J38 B;  2EC3 A;  2G7I A;  2CG7 A;  5FO8 C;  3IX0 A;  3KXV A;  3ZRZ A;  4YNX A;  2XQW C;  1GPZ A;  1OJY A;  1ZJK A;  1J7M A;  2RKY A;  2CKU A;  1GKN A;  2UWN A;  4B2S A;  1CKL A;  2CG6 A;  4LOT A;  3T5O A;  2W80 A;  3O8E B;  3INB C;  1UOT P;  5HZP B;  1NWV A;  4AYI A;  4A5W B;  1GHQ B;  1Z92 B;  1U5M A;  2IZ3 A;  3MQL A;  2JGW A;  1FBR A;  2KMS A;  2KRI A;  3ZD1 A;  2A55 A;  2YBY A;  1O9A A;  4IGD A;  1L6J A;  1QGB A;  3ERB A;  5HYP A;  5JPM G;  1QO6 A;  2RKZ A;  1ELV A;  2FN2 A;  3RJ3 D;  1G4F A;  1OK2 A;  2MCY A;  2MCZ A;  3ZD2 A;  2XRD A;  4AYE A;  1GXD A;  2LOJ A;  1E8B A;  1H8P A;  1OJW A;  4CSY A;  1H2Q P;  1E88 A;  1HCC A;  1MD8 A;  2QY0 A;  1OJV A;  4WJG 2;  1H03 P;  5I0Q B;  1TPG A;  3EJH A;  3TVJ A;  1TPN A;  2XRB A;  4MUC A;  1PDC A;  3L89 M;  1EAK A;  3OP8 A;  1VVD A;  4DJZ A;  2O39 C;  4F4O C;  1MD7 A;  1QUB A;  3SW0 X;  1VVC A;  2XWJ I;  2BZM A;  3CAL A;  1Q3X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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