1QO6A

Solution structure of a pair of modules from the gelatin-binding domain of fibronectin
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
101
structure length
101
Chain Sequence
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion protein
source organism Homo sapiens
publication title Solution Structure of a Pair of Modules from the Gelatin-Binding Domain of Fibronectin
pubmed doi rcsb
molecule keywords FIBRONECTIN
total genus 6
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1999-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1qo6A02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1qo6A01
3IU3I 1LY2A 2W81A 4CSYA 2JRAA 2RKZA 1MD8A 2CG6A 1C1ZA 4K12A 1GPZA 1H2QP 1QUBA 2RLQA 1OK1A 1G4GA 1SRZA 1OK2A 1E88A 1EAKA 1TPGA 3RJ3D 3R62A 1UOTP 2JGXA 4YNXA 4ONTD 1NWVA 1QGBA 4AYMA 1OK3A 2IZ4A 2XQWC 3ZD1A 4IGDA 2CKUA 1H03P 1GXDA 2V5OA 1SS2A 2RKYA 3KZJA 1GHQB 2IZ3A 3M7PA 5FO8C 3EJHA 4F4OC 2UWNA 2BZMA 1QO6A 2JGWA 3SW0X 3ZD2A 3MQLA 2CG7A 3OEDC 4LOSA 5HZPB 2KRIA 1OJWA 3O8EB 1OJYA 3GOVA 1OJVA 1ELVA 1TPNA 1CXWA 1O9AA 4A5WB 3T5OA 2EC3A 4KKDA 2XWJI 1GKNA 2A55A 5I0QB 2ERJA 1HCCA 2EHFA 1H2PP 3L89M 2RL0A 3OXUD 1CKLA 1HFHA 1E8BA 2MCZA 5JPMG 3INBC 5HYUB 4WJG2 1VVCA 2WIIC 1GKGA 1H8PA 3ERBA 1HFIA 2O39C 1OK9A 3IX0A 2LOJA 2FN2A 1L6JA 3ZRZA 2QY0A 1FBRA 4DJZA 2KMSA 4PZ5A 2B5ID 1J7MA 3CALA 2G7IA 4ZH1D 1PPQA 4AYEA 3OP8A 4B2RA 2YBYA 1MD7A 1KS0A 4B2SA 2RLPA 5HYTB 4C16A 3TVJA 4AYIA 2V8EA 1PDCA 1CK7A 4J38B 4MUCA 1H04P 5HYPA 3GXEA 2MCYA 3NFPI 1Z92B 2XWBF 2W80A 4LOTA 1TPMA 3KXVA 1Q3XA 2YRAA 1ZJKA 1G4FA 4JHSA 4AYDA 1VVDA 2XRDA 1U5MA 1E5GA 4FXGG 2XRBA
chains in the Genus database with same CATH superfamily
3IU3I 1LY2A 3WD4A 2JCHA 4Z2IA 2W81A 2Y2IA 4CSYA 5DN5A 3L2AA 2JRAA 1YU3A 2RKZA 3KS4A 4MB3A 1MD8A 4IBCA 1C1ZA 2CG6A 1GPZA 4TX8A 1H2QP 3CI0J 3L25A 2X2ZA 4NZ5A 2Y2HA 2IOUA 3WD2A 1YU4A 1QUBA 1UR9A 2RLQA 1OK1A 1G4GA 1SRZA 4Z2JA 4GHLA 2Y2JA 1OK2A 1OGGA 1E88A 4HMDA 1EAKA 1AIWA 1TPGA 3K3TA 3R62A 1UOTP 3RJ3D 4MSLA 1W1PA 4HMEA 2JGXA 4YNXA 4ONTD 1NWVA 1QGBA 3L27A 4AYMA 1OK3A 3FGTA 2IZ4A 2XQWC 2D49A 4NYUA 3WX7A 3ZD1A 4IGDA 3KS8A 2Y2KA 1ED7A 4IJEA 2BG1A 1H03P 1GXDA 2CKUA 2Y8SA 3FGRA 4IBFA 1YU0A 2V5OA 1SS2A 2I2LA 2RKYA 3KZJA 3L28A 4NZ3A 1GHQB 3M7PA 1YUEA 4MB5A 2IZ3A 2Y8TA 5FO8C 4MB4A 3EJHA 4IBEA 4F4OC 2UWNA 4IBKA 2BZMA 1QO6A 4NYYA 2JGWA 3SW0X 3HONA 3ZD2A 2Y2GA 4HMCA 3MQLA 2CG7A 3OEDC 4LOSA 4OUIA 5HZPB 4QNLA 2KRIA 1H0GA 1OJWA 3VWOA 3O8EB 4LG2A 1OJYA 3GOVA 1OJVA 1ELVA 1E6ZA 1TPNA 1CXWA 1O9AA 2Y2MA 3NJAA 4A5WB 2XD5A 3T5OA 2EC3A 4KKDA 2XWJI 1GKNA 3WD1A 2A55A 5I0QB 2Y2PA 2Y8RA 2ERJA 2FFFB 1HCCA 2EHFA 1H2PP 3L89M 3WSYA 4GH9A 1RLHA 2RL0A 3OXUD 3ZLEA 1CKLA 1HFHA 1E8BA 1E6RA 2MCZA 5DN4A 5JPMG 3F6KA 2UWXA 3INBC 4OJ6A 5HYUB 4WJG2 1VVCA 2WIIC 1GKGA 1H8PA 4N7EA 1O6IA 5BPVA 3ERBA 1HFIA 2O39C 1OK9A 4IBDA 3IX0A 4NZ1A 2LOJA 2FN2A 1L6JA 3ZRZA 2QY0A 1FBRA 4DJZA 3WD3A 2KMSA 4PZ5A 2B5ID 3FKEA 1J7MA 3CALA 1E15A 3L26A 2G7IA 4Z2KA 2RTSA 4Z2LA 4ZH1D 1GPFA 1PPQA 4AYEA 3OP8A 4B2RA 2YBYA 1MD7A 4GHAA 3WSXA 1KS0A 4OJPA 1W1VA 4B2SA 2RLPA 4YIZA 3L29A 5HYTB 3N3FA 1YU2A 4C16A 4IBJA 4OJ5A 1W1TA 3ZLDA 4APLA 4BWCA 4IBGA 4Z2HA 3TVJA 4AYIA 2Y2QA 2V8EA 1PDCA 1GOIA 1UR8A 1CK7A 4J38B 4IJFA 4MUCA 2Y2NA 4OJLA 1H04P 1YU1A 5HYPA 2JE5A 3GXEA 2MCYA 3NFPI 1Z92B 2XWBF 1OGBA 2ZYCA 3HSHA 2W80A 4K12A 4LOTA 1TPMA 1W1YA 3KXVA 2Y2OA 3WD0A 1Q3XA 2YRAA 1ZJKA 4PO7A 1H0IA 1G4FA 2Y2LA 4OJOA 4JHSA 4IBIA 1VVDA 4AYDA 2XD1A 4NZ4A 2XRDA 1U5MA 4IBBA 4NY2A 4Z2GA 1E6PA 4FXGG 2XRBA 1E5GA 1E6NA
chains in the Genus database with same CATH topology
3IU3I 1LY2A 2W81A 4CSYA 2JRAA 2RKZA 1MD8A 2CG6A 1C1ZA 4K12A 1GPZA 1H2QP 1QUBA 2RLQA 1OK1A 1G4GA 1SRZA 1OK2A 1E88A 1EAKA 1TPGA 3RJ3D 3R62A 1UOTP 2JGXA 4YNXA 4ONTD 1NWVA 1QGBA 4AYMA 1OK3A 2IZ4A 2XQWC 3ZD1A 4IGDA 2CKUA 1H03P 1GXDA 2V5OA 1SS2A 2RKYA 3KZJA 1GHQB 2IZ3A 3M7PA 5FO8C 3EJHA 4F4OC 2UWNA 2BZMA 1QO6A 2JGWA 3SW0X 3ZD2A 3MQLA 2CG7A 3OEDC 4LOSA 5HZPB 2KRIA 1OJWA 3O8EB 1OJYA 3GOVA 1OJVA 1ELVA 1TPNA 1CXWA 1O9AA 4A5WB 3T5OA 2EC3A 4KKDA 2XWJI 1GKNA 2A55A 5I0QB 2ERJA 1HCCA 2EHFA 1H2PP 3L89M 2RL0A 3OXUD 1CKLA 1HFHA 1E8BA 2MCZA 5JPMG 3INBC 5HYUB 4WJG2 1VVCA 2WIIC 1GKGA 1H8PA 3ERBA 1HFIA 2O39C 1OK9A 3IX0A 2LOJA 2FN2A 1L6JA 3ZRZA 2QY0A 1FBRA 4DJZA 2KMSA 4PZ5A 2B5ID 1J7MA 3CALA 2G7IA 4ZH1D 1PPQA 4AYEA 3OP8A 4B2RA 2YBYA 1MD7A 1KS0A 4B2SA 2RLPA 5HYTB 4C16A 3TVJA 4AYIA 2V8EA 1PDCA 1CK7A 4J38B 4MUCA 1H04P 5HYPA 3GXEA 2MCYA 3NFPI 1Z92B 2XWBF 2W80A 4LOTA 1TPMA 3KXVA 1Q3XA 2YRAA 1ZJKA 1G4FA 4JHSA 4AYDA 1VVDA 2XRDA 1U5MA 1E5GA 4FXGG 2XRBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IU3 I;  1LY2 A;  2W81 A;  4CSY A;  2JRA A;  2RKZ A;  1MD8 A;  2CG6 A;  1C1Z A;  4K12 A;  1GPZ A;  1H2Q P;  1QUB A;  2RLQ A;  1OK1 A;  1G4G A;  1SRZ A;  1OK2 A;  1E88 A;  1EAK A;  1TPG A;  3RJ3 D;  3R62 A;  1UOT P;  2JGX A;  4YNX A;  4ONT D;  1NWV A;  1QGB A;  4AYM A;  1OK3 A;  2IZ4 A;  2XQW C;  3ZD1 A;  4IGD A;  2CKU A;  1H03 P;  1GXD A;  2V5O A;  1SS2 A;  2RKY A;  3KZJ A;  1GHQ B;  2IZ3 A;  3M7P A;  5FO8 C;  3EJH A;  4F4O C;  2UWN A;  2BZM A;  1QO6 A;  2JGW A;  3SW0 X;  3ZD2 A;  3MQL A;  2CG7 A;  3OED C;  4LOS A;  5HZP B;  2KRI A;  1OJW A;  3O8E B;  1OJY A;  3GOV A;  1OJV A;  1ELV A;  1TPN A;  1CXW A;  1O9A A;  4A5W B;  3T5O A;  2EC3 A;  4KKD A;  2XWJ I;  1GKN A;  2A55 A;  5I0Q B;  2ERJ A;  1HCC A;  2EHF A;  1H2P P;  3L89 M;  2RL0 A;  3OXU D;  1CKL A;  1HFH A;  1E8B A;  2MCZ A;  5JPM G;  3INB C;  5HYU B;  4WJG 2;  1VVC A;  2WII C;  1GKG A;  1H8P A;  3ERB A;  1HFI A;  2O39 C;  1OK9 A;  3IX0 A;  2LOJ A;  2FN2 A;  1L6J A;  3ZRZ A;  2QY0 A;  1FBR A;  4DJZ A;  2KMS A;  4PZ5 A;  2B5I D;  1J7M A;  3CAL A;  2G7I A;  4ZH1 D;  1PPQ A;  4AYE A;  3OP8 A;  4B2R A;  2YBY A;  1MD7 A;  1KS0 A;  4B2S A;  2RLP A;  5HYT B;  4C16 A;  3TVJ A;  4AYI A;  2V8E A;  1PDC A;  1CK7 A;  4J38 B;  4MUC A;  1H04 P;  5HYP A;  3GXE A;  2MCY A;  3NFP I;  1Z92 B;  2XWB F;  2W80 A;  4LOT A;  1TPM A;  3KXV A;  1Q3X A;  2YRA A;  1ZJK A;  1G4F A;  4JHS A;  4AYD A;  1VVD A;  2XRD A;  1U5M A;  1E5G A;  4FXG G;  2XRB A; 
#chains in the Genus database with same CATH topology
 3IU3 I;  1LY2 A;  3WD4 A;  2JCH A;  4Z2I A;  2W81 A;  2Y2I A;  4CSY A;  5DN5 A;  3L2A A;  2JRA A;  1YU3 A;  2RKZ A;  3KS4 A;  4MB3 A;  1MD8 A;  4IBC A;  1C1Z A;  2CG6 A;  1GPZ A;  4TX8 A;  1H2Q P;  3CI0 J;  3L25 A;  2X2Z A;  4NZ5 A;  2Y2H A;  2IOU A;  3WD2 A;  1YU4 A;  1QUB A;  1UR9 A;  2RLQ A;  1OK1 A;  1G4G A;  1SRZ A;  4Z2J A;  4GHL A;  2Y2J A;  1OK2 A;  1OGG A;  1E88 A;  4HMD A;  1EAK A;  1AIW A;  1TPG A;  3K3T A;  3R62 A;  1UOT P;  3RJ3 D;  4MSL A;  1W1P A;  4HME A;  2JGX A;  4YNX A;  4ONT D;  1NWV A;  1QGB A;  3L27 A;  4AYM A;  1OK3 A;  3FGT A;  2IZ4 A;  2XQW C;  2D49 A;  4NYU A;  3WX7 A;  3ZD1 A;  4IGD A;  3KS8 A;  2Y2K A;  1ED7 A;  4IJE A;  2BG1 A;  1H03 P;  1GXD A;  2CKU A;  2Y8S A;  3FGR A;  4IBF A;  1YU0 A;  2V5O A;  1SS2 A;  2I2L A;  2RKY A;  3KZJ A;  3L28 A;  4NZ3 A;  1GHQ B;  3M7P A;  1YUE A;  4MB5 A;  2IZ3 A;  2Y8T A;  5FO8 C;  4MB4 A;  3EJH A;  4IBE A;  4F4O C;  2UWN A;  4IBK A;  2BZM A;  1QO6 A;  4NYY A;  2JGW A;  3SW0 X;  3HON A;  3ZD2 A;  2Y2G A;  4HMC A;  3MQL A;  2CG7 A;  3OED C;  4LOS A;  4OUI A;  5HZP B;  4QNL A;  2KRI A;  1H0G A;  1OJW A;  3VWO A;  3O8E B;  4LG2 A;  1OJY A;  3GOV A;  1OJV A;  1ELV A;  1E6Z A;  1TPN A;  1CXW A;  1O9A A;  2Y2M A;  3NJA A;  4A5W B;  2XD5 A;  3T5O A;  2EC3 A;  4KKD A;  2XWJ I;  1GKN A;  3WD1 A;  2A55 A;  5I0Q B;  2Y2P A;  2Y8R A;  2ERJ A;  2FFF B;  1HCC A;  2EHF A;  1H2P P;  3L89 M;  3WSY A;  4GH9 A;  1RLH A;  2RL0 A;  3OXU D;  3ZLE A;  1CKL A;  1HFH A;  1E8B A;  1E6R A;  2MCZ A;  5DN4 A;  5JPM G;  3F6K A;  2UWX A;  3INB C;  4OJ6 A;  5HYU B;  4WJG 2;  1VVC A;  2WII C;  1GKG A;  1H8P A;  4N7E A;  1O6I A;  5BPV A;  3ERB A;  1HFI A;  2O39 C;  1OK9 A;  4IBD A;  3IX0 A;  4NZ1 A;  2LOJ A;  2FN2 A;  1L6J A;  3ZRZ A;  2QY0 A;  1FBR A;  4DJZ A;  3WD3 A;  2KMS A;  4PZ5 A;  2B5I D;  3FKE A;  1J7M A;  3CAL A;  1E15 A;  3L26 A;  2G7I A;  4Z2K A;  2RTS A;  4Z2L A;  4ZH1 D;  1GPF A;  1PPQ A;  4AYE A;  3OP8 A;  4B2R A;  2YBY A;  1MD7 A;  4GHA A;  3WSX A;  1KS0 A;  4OJP A;  1W1V A;  4B2S A;  2RLP A;  4YIZ A;  3L29 A;  5HYT B;  3N3F A;  1YU2 A;  4C16 A;  4IBJ A;  4OJ5 A;  1W1T A;  3ZLD A;  4APL A;  4BWC A;  4IBG A;  4Z2H A;  3TVJ A;  4AYI A;  2Y2Q A;  2V8E A;  1PDC A;  1GOI A;  1UR8 A;  1CK7 A;  4J38 B;  4IJF A;  4MUC A;  2Y2N A;  4OJL A;  1H04 P;  1YU1 A;  5HYP A;  2JE5 A;  3GXE A;  2MCY A;  3NFP I;  1Z92 B;  2XWB F;  1OGB A;  2ZYC A;  3HSH A;  2W80 A;  4K12 A;  4LOT A;  1TPM A;  1W1Y A;  3KXV A;  2Y2O A;  3WD0 A;  1Q3X A;  2YRA A;  1ZJK A;  4PO7 A;  1H0I A;  1G4F A;  2Y2L A;  4OJO A;  4JHS A;  4IBI A;  1VVD A;  4AYD A;  2XD1 A;  4NZ4 A;  2XRD A;  1U5M A;  4IBB A;  4NY2 A;  4Z2G A;  1E6P A;  4FXG G;  2XRB A;  1E5G A;  1E6N A; 
#chains in the Genus database with same CATH homology
 3IU3 I;  1LY2 A;  2W81 A;  4CSY A;  2JRA A;  2RKZ A;  1MD8 A;  2CG6 A;  1C1Z A;  4K12 A;  1GPZ A;  1H2Q P;  1QUB A;  2RLQ A;  1OK1 A;  1G4G A;  1SRZ A;  1OK2 A;  1E88 A;  1EAK A;  1TPG A;  3RJ3 D;  3R62 A;  1UOT P;  2JGX A;  4YNX A;  4ONT D;  1NWV A;  1QGB A;  4AYM A;  1OK3 A;  2IZ4 A;  2XQW C;  3ZD1 A;  4IGD A;  2CKU A;  1H03 P;  1GXD A;  2V5O A;  1SS2 A;  2RKY A;  3KZJ A;  1GHQ B;  2IZ3 A;  3M7P A;  5FO8 C;  3EJH A;  4F4O C;  2UWN A;  2BZM A;  1QO6 A;  2JGW A;  3SW0 X;  3ZD2 A;  3MQL A;  2CG7 A;  3OED C;  4LOS A;  5HZP B;  2KRI A;  1OJW A;  3O8E B;  1OJY A;  3GOV A;  1OJV A;  1ELV A;  1TPN A;  1CXW A;  1O9A A;  4A5W B;  3T5O A;  2EC3 A;  4KKD A;  2XWJ I;  1GKN A;  2A55 A;  5I0Q B;  2ERJ A;  1HCC A;  2EHF A;  1H2P P;  3L89 M;  2RL0 A;  3OXU D;  1CKL A;  1HFH A;  1E8B A;  2MCZ A;  5JPM G;  3INB C;  5HYU B;  4WJG 2;  1VVC A;  2WII C;  1GKG A;  1H8P A;  3ERB A;  1HFI A;  2O39 C;  1OK9 A;  3IX0 A;  2LOJ A;  2FN2 A;  1L6J A;  3ZRZ A;  2QY0 A;  1FBR A;  4DJZ A;  2KMS A;  4PZ5 A;  2B5I D;  1J7M A;  3CAL A;  2G7I A;  4ZH1 D;  1PPQ A;  4AYE A;  3OP8 A;  4B2R A;  2YBY A;  1MD7 A;  1KS0 A;  4B2S A;  2RLP A;  5HYT B;  4C16 A;  3TVJ A;  4AYI A;  2V8E A;  1PDC A;  1CK7 A;  4J38 B;  4MUC A;  1H04 P;  5HYP A;  3GXE A;  2MCY A;  3NFP I;  1Z92 B;  2XWB F;  2W80 A;  4LOT A;  1TPM A;  3KXV A;  1Q3X A;  2YRA A;  1ZJK A;  1G4F A;  4JHS A;  4AYD A;  1VVD A;  2XRD A;  1U5M A;  1E5G A;  4FXG G;  2XRB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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