1QO6A

Solution structure of a pair of modules from the gelatin-binding domain of fibronectin
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
101
structure length
101
Chain Sequence
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion protein
source organism Homo sapiens
publication title Solution Structure of a Pair of Modules from the Gelatin-Binding Domain of Fibronectin
pubmed doi rcsb
molecule keywords FIBRONECTIN
total genus 6
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1999-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1qo6A02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1qo6A01
4YNXA 1C1ZA 2ERJA 5I0QB 1LY2A 2YBYA 2XRDA 3T5OA 3OEDC 3TVJA 1ZJKA 3INBC 4FXGG 3ERBA 4MUCA 1TPGA 2RKYA 1GKGA 1SRZA 2KMSA 2IZ4A 1EAKA 1CK7A 4WJG2 4ZH1D 3M7PA 1TPNA 1SS2A 3L89M 2JRAA 3O8EB 4AYDA 2B5ID 3RJ3D 1FBRA 1NWVA 1Q3XA 1H03P 1H2QP 2YRAA 5HYUB 2W80A 3KZJA 4PZ5A 4C16A 1PDCA 3OP8A 1QGBA 2XRBA 2EC3A 1U5MA 3ZD1A 1OJYA 2WIIC 1OK9A 2A55A 3ZRZA 4DJZA 2JGXA 1OK3A 1HFIA 1VVDA 2CG7A 1G4FA 3R62A 1VVCA 2V5OA 2CG6A 2KRIA 2W81A 2RKZA 1E5GA 1PPQA 1HFHA 1GPZA 5FO8C 3ZD2A 1GKNA 1E88A 3IX0A 1J7MA 2O39C 3OXUD 1Z92B 2XWJI 1CKLA 3MQLA 1O9AA 1G4GA 1HCCA 1QO6A 4KKDA 3EJHA 1MD7A 2RLPA 2V8EA 3CALA 5HZPB 4ONTD 3SW0X 4F4OC 4A5WB 1MD8A 1GXDA 2EHFA 2MCYA 1QUBA 4JHSA 5HYPA 4CSYA 4B2SA 2G7IA 1OJWA 1CXWA 3GOVA 2RL0A 2CKUA 1OJVA 3IU3I 4B2RA 2JGWA 2XQWC 2LOJA 1TPMA 4LOTA 1KS0A 3GXEA 4K12A 2BZMA 1H8PA 1GHQB 4AYEA 1UOTP 1H04P 3KXVA 4J38B 4AYIA 5HYTB 4IGDA 2MCZA 2UWNA 3NFPI 2QY0A 5JPMG 2XWBF 4LOSA 2FN2A 1L6JA 1E8BA 2IZ3A 1OK1A 1ELVA 1H2PP 1OK2A 2RLQA 4AYMA
chains in the Genus database with same CATH superfamily
1GPFA 2FFFB 4YNXA 1C1ZA 2ERJA 1YUEA 5I0QB 1LY2A 2YBYA 2XRDA 3T5OA 3L27A 4HMCA 3OEDC 2UWXA 1E6RA 3TVJA 1AIWA 1ZJKA 3INBC 4FXGG 3ERBA 4MUCA 2IOUA 1TPGA 2RKYA 4GHAA 1GKGA 1SRZA 4BWCA 2KMSA 4NYYA 4OJOA 4Z2HA 2Y2JA 4OJ6A 1EAKA 2IZ4A 2BG1A 2Y8RA 1CK7A 4GH9A 4MB3A 4Z2KA 2I2LA 4WJG2 4ZH1D 3M7PA 1W1PA 2Y2MA 4HMEA 4IBEA 1TPNA 1SS2A 3L89M 1YU3A 2JRAA 3O8EB 4AYDA 1OGGA 2B5ID 3RJ3D 1FBRA 1NWVA 1Q3XA 1H03P 2ZYCA 3CI0J 3L29A 1H2QP 2YRAA 4N7EA 5HYUB 1W1YA 2W80A 5DN4A 3KZJA 3L2AA 4PZ5A 4C16A 2Y2KA 2Y2IA 1PDCA 3OP8A 1QGBA 2XRBA 3VWOA 2EC3A 1U5MA 1YU2A 3ZD1A 1W1VA 1OJYA 2WIIC 1OK9A 2A55A 3ZRZA 4PO7A 3FGTA 4DJZA 2JGXA 1OK3A 1HFIA 1VVDA 2XD1A 2CG7A 4NZ4A 4QNLA 3ZLDA 4NZ1A 3R62A 1G4FA 1VVCA 2V5OA 1H0IA 4IJFA 4OJLA 2CG6A 4IBIA 2KRIA 4GHLA 2W81A 4LOTA 2RKZA 4MSLA 1E5GA 1PPQA 4NZ5A 1HFHA 1YU4A 1GPZA 2X2ZA 3WD3A 5FO8C 3ZD2A 1GKNA 4MB4A 1E88A 3IX0A 1J7MA 2Y2OA 2O39C 2Y8SA 2Y2PA 3L26A 3OXUD 1UR8A 3L28A 1E6ZA 2D49A 1Z92B 2XWJI 1YU1A 1OGBA 3FKEA 3MQLA 1CKLA 1O9AA 5DN5A 1G4GA 1HCCA 1QO6A 3FGRA 3HONA 4KKDA 4Z2IA 3EJHA 1MD7A 1E6PA 4NZ3A 2RLPA 2V8EA 1E6NA 3CALA 3L25A 1W1TA 4HMDA 5HZPB 2RTSA 3NJAA 3ZLEA 1O6IA 4IBGA 3F6KA 4ONTD 1GOIA 3SW0X 4F4OC 2JE5A 3WD2A 4A5WB 1MD8A 1GXDA 4IJEA 2EHFA 2MCYA 4APLA 4IBBA 1QUBA 3KS8A 4JHSA 1RLHA 5HYPA 4Z2GA 4CSYA 4B2SA 2XD5A 2G7IA 4Z2JA 1OJWA 1CXWA 3GOVA 4OUIA 5BPVA 2RL0A 2CKUA 1YU0A 1OJVA 4OJPA 3IU3I 4B2RA 2JGWA 2XQWC 2LOJA 1TPMA 4NY2A 4OJ5A 3KS4A 3WD0A 1KS0A 3GXEA 4K12A 2BZMA 3WSYA 1H8PA 3K3TA 1GHQB 4AYEA 2Y2LA 1UOTP 1H04P 3KXVA 4YIZA 3WSXA 2JCHA 4J38B 4AYIA 4Z2LA 3HSHA 5HYTB 4IGDA 2MCZA 2Y2NA 4LG2A 4IBKA 4IBJA 2UWNA 3NFPI 1H0GA 1ED7A 2QY0A 5JPMG 2XWBF 2Y2HA 4IBFA 2Y8TA 4LOSA 3WD1A 2FN2A 4IBDA 1L6JA 4MB5A 1E8BA 2IZ3A 4TX8A 1OK1A 1ELVA 3N3FA 1H2PP 1UR9A 1OK2A 2RLQA 4AYMA 2Y2QA 4NYUA 2Y2GA 4IBCA 3WD4A 1E15A 3WX7A
chains in the Genus database with same CATH topology
4YNXA 1C1ZA 2ERJA 5I0QB 1LY2A 2YBYA 2XRDA 3T5OA 3OEDC 3TVJA 1ZJKA 3INBC 4FXGG 3ERBA 4MUCA 1TPGA 2RKYA 1GKGA 1SRZA 2KMSA 2IZ4A 1EAKA 1CK7A 4WJG2 4ZH1D 3M7PA 1TPNA 1SS2A 3L89M 2JRAA 3O8EB 4AYDA 2B5ID 3RJ3D 1FBRA 1NWVA 1Q3XA 1H03P 1H2QP 2YRAA 5HYUB 2W80A 3KZJA 4PZ5A 4C16A 1PDCA 3OP8A 1QGBA 2XRBA 2EC3A 1U5MA 3ZD1A 1OJYA 2WIIC 1OK9A 2A55A 3ZRZA 4DJZA 2JGXA 1OK3A 1HFIA 1VVDA 2CG7A 1G4FA 3R62A 1VVCA 2V5OA 2CG6A 2KRIA 2W81A 2RKZA 1E5GA 1PPQA 1HFHA 1GPZA 5FO8C 3ZD2A 1GKNA 1E88A 3IX0A 1J7MA 2O39C 3OXUD 1Z92B 2XWJI 1CKLA 3MQLA 1O9AA 1G4GA 1HCCA 1QO6A 4KKDA 3EJHA 1MD7A 2RLPA 2V8EA 3CALA 5HZPB 4ONTD 3SW0X 4F4OC 4A5WB 1MD8A 1GXDA 2EHFA 2MCYA 1QUBA 4JHSA 5HYPA 4CSYA 4B2SA 2G7IA 1OJWA 1CXWA 3GOVA 2RL0A 2CKUA 1OJVA 3IU3I 4B2RA 2JGWA 2XQWC 2LOJA 1TPMA 4LOTA 1KS0A 3GXEA 4K12A 2BZMA 1H8PA 1GHQB 4AYEA 1UOTP 1H04P 3KXVA 4J38B 4AYIA 5HYTB 4IGDA 2MCZA 2UWNA 3NFPI 2QY0A 5JPMG 2XWBF 4LOSA 2FN2A 1L6JA 1E8BA 2IZ3A 1OK1A 1ELVA 1H2PP 1OK2A 2RLQA 4AYMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YNX A;  1C1Z A;  2ERJ A;  5I0Q B;  1LY2 A;  2YBY A;  2XRD A;  3T5O A;  3OED C;  3TVJ A;  1ZJK A;  3INB C;  4FXG G;  3ERB A;  4MUC A;  1TPG A;  2RKY A;  1GKG A;  1SRZ A;  2KMS A;  2IZ4 A;  1EAK A;  1CK7 A;  4WJG 2;  4ZH1 D;  3M7P A;  1TPN A;  1SS2 A;  3L89 M;  2JRA A;  3O8E B;  4AYD A;  2B5I D;  3RJ3 D;  1FBR A;  1NWV A;  1Q3X A;  1H03 P;  1H2Q P;  2YRA A;  5HYU B;  2W80 A;  3KZJ A;  4PZ5 A;  4C16 A;  1PDC A;  3OP8 A;  1QGB A;  2XRB A;  2EC3 A;  1U5M A;  3ZD1 A;  1OJY A;  2WII C;  1OK9 A;  2A55 A;  3ZRZ A;  4DJZ A;  2JGX A;  1OK3 A;  1HFI A;  1VVD A;  2CG7 A;  1G4F A;  3R62 A;  1VVC A;  2V5O A;  2CG6 A;  2KRI A;  2W81 A;  2RKZ A;  1E5G A;  1PPQ A;  1HFH A;  1GPZ A;  5FO8 C;  3ZD2 A;  1GKN A;  1E88 A;  3IX0 A;  1J7M A;  2O39 C;  3OXU D;  1Z92 B;  2XWJ I;  1CKL A;  3MQL A;  1O9A A;  1G4G A;  1HCC A;  1QO6 A;  4KKD A;  3EJH A;  1MD7 A;  2RLP A;  2V8E A;  3CAL A;  5HZP B;  4ONT D;  3SW0 X;  4F4O C;  4A5W B;  1MD8 A;  1GXD A;  2EHF A;  2MCY A;  1QUB A;  4JHS A;  5HYP A;  4CSY A;  4B2S A;  2G7I A;  1OJW A;  1CXW A;  3GOV A;  2RL0 A;  2CKU A;  1OJV A;  3IU3 I;  4B2R A;  2JGW A;  2XQW C;  2LOJ A;  1TPM A;  4LOT A;  1KS0 A;  3GXE A;  4K12 A;  2BZM A;  1H8P A;  1GHQ B;  4AYE A;  1UOT P;  1H04 P;  3KXV A;  4J38 B;  4AYI A;  5HYT B;  4IGD A;  2MCZ A;  2UWN A;  3NFP I;  2QY0 A;  5JPM G;  2XWB F;  4LOS A;  2FN2 A;  1L6J A;  1E8B A;  2IZ3 A;  1OK1 A;  1ELV A;  1H2P P;  1OK2 A;  2RLQ A;  4AYM A; 
#chains in the Genus database with same CATH topology
 1GPF A;  2FFF B;  4YNX A;  1C1Z A;  2ERJ A;  1YUE A;  5I0Q B;  1LY2 A;  2YBY A;  2XRD A;  3T5O A;  3L27 A;  4HMC A;  3OED C;  2UWX A;  1E6R A;  3TVJ A;  1AIW A;  1ZJK A;  3INB C;  4FXG G;  3ERB A;  4MUC A;  2IOU A;  1TPG A;  2RKY A;  4GHA A;  1GKG A;  1SRZ A;  4BWC A;  2KMS A;  4NYY A;  4OJO A;  4Z2H A;  2Y2J A;  4OJ6 A;  1EAK A;  2IZ4 A;  2BG1 A;  2Y8R A;  1CK7 A;  4GH9 A;  4MB3 A;  4Z2K A;  2I2L A;  4WJG 2;  4ZH1 D;  3M7P A;  1W1P A;  2Y2M A;  4HME A;  4IBE A;  1TPN A;  1SS2 A;  3L89 M;  1YU3 A;  2JRA A;  3O8E B;  4AYD A;  1OGG A;  2B5I D;  3RJ3 D;  1FBR A;  1NWV A;  1Q3X A;  1H03 P;  2ZYC A;  3CI0 J;  3L29 A;  1H2Q P;  2YRA A;  4N7E A;  5HYU B;  1W1Y A;  2W80 A;  5DN4 A;  3KZJ A;  3L2A A;  4PZ5 A;  4C16 A;  2Y2K A;  2Y2I A;  1PDC A;  3OP8 A;  1QGB A;  2XRB A;  3VWO A;  2EC3 A;  1U5M A;  1YU2 A;  3ZD1 A;  1W1V A;  1OJY A;  2WII C;  1OK9 A;  2A55 A;  3ZRZ A;  4PO7 A;  3FGT A;  4DJZ A;  2JGX A;  1OK3 A;  1HFI A;  1VVD A;  2XD1 A;  2CG7 A;  4NZ4 A;  4QNL A;  3ZLD A;  4NZ1 A;  3R62 A;  1G4F A;  1VVC A;  2V5O A;  1H0I A;  4IJF A;  4OJL A;  2CG6 A;  4IBI A;  2KRI A;  4GHL A;  2W81 A;  4LOT A;  2RKZ A;  4MSL A;  1E5G A;  1PPQ A;  4NZ5 A;  1HFH A;  1YU4 A;  1GPZ A;  2X2Z A;  3WD3 A;  5FO8 C;  3ZD2 A;  1GKN A;  4MB4 A;  1E88 A;  3IX0 A;  1J7M A;  2Y2O A;  2O39 C;  2Y8S A;  2Y2P A;  3L26 A;  3OXU D;  1UR8 A;  3L28 A;  1E6Z A;  2D49 A;  1Z92 B;  2XWJ I;  1YU1 A;  1OGB A;  3FKE A;  3MQL A;  1CKL A;  1O9A A;  5DN5 A;  1G4G A;  1HCC A;  1QO6 A;  3FGR A;  3HON A;  4KKD A;  4Z2I A;  3EJH A;  1MD7 A;  1E6P A;  4NZ3 A;  2RLP A;  2V8E A;  1E6N A;  3CAL A;  3L25 A;  1W1T A;  4HMD A;  5HZP B;  2RTS A;  3NJA A;  3ZLE A;  1O6I A;  4IBG A;  3F6K A;  4ONT D;  1GOI A;  3SW0 X;  4F4O C;  2JE5 A;  3WD2 A;  4A5W B;  1MD8 A;  1GXD A;  4IJE A;  2EHF A;  2MCY A;  4APL A;  4IBB A;  1QUB A;  3KS8 A;  4JHS A;  1RLH A;  5HYP A;  4Z2G A;  4CSY A;  4B2S A;  2XD5 A;  2G7I A;  4Z2J A;  1OJW A;  1CXW A;  3GOV A;  4OUI A;  5BPV A;  2RL0 A;  2CKU A;  1YU0 A;  1OJV A;  4OJP A;  3IU3 I;  4B2R A;  2JGW A;  2XQW C;  2LOJ A;  1TPM A;  4NY2 A;  4OJ5 A;  3KS4 A;  3WD0 A;  1KS0 A;  3GXE A;  4K12 A;  2BZM A;  3WSY A;  1H8P A;  3K3T A;  1GHQ B;  4AYE A;  2Y2L A;  1UOT P;  1H04 P;  3KXV A;  4YIZ A;  3WSX A;  2JCH A;  4J38 B;  4AYI A;  4Z2L A;  3HSH A;  5HYT B;  4IGD A;  2MCZ A;  2Y2N A;  4LG2 A;  4IBK A;  4IBJ A;  2UWN A;  3NFP I;  1H0G A;  1ED7 A;  2QY0 A;  5JPM G;  2XWB F;  2Y2H A;  4IBF A;  2Y8T A;  4LOS A;  3WD1 A;  2FN2 A;  4IBD A;  1L6J A;  4MB5 A;  1E8B A;  2IZ3 A;  4TX8 A;  1OK1 A;  1ELV A;  3N3F A;  1H2P P;  1UR9 A;  1OK2 A;  2RLQ A;  4AYM A;  2Y2Q A;  4NYU A;  2Y2G A;  4IBC A;  3WD4 A;  1E15 A;  3WX7 A; 
#chains in the Genus database with same CATH homology
 4YNX A;  1C1Z A;  2ERJ A;  5I0Q B;  1LY2 A;  2YBY A;  2XRD A;  3T5O A;  3OED C;  3TVJ A;  1ZJK A;  3INB C;  4FXG G;  3ERB A;  4MUC A;  1TPG A;  2RKY A;  1GKG A;  1SRZ A;  2KMS A;  2IZ4 A;  1EAK A;  1CK7 A;  4WJG 2;  4ZH1 D;  3M7P A;  1TPN A;  1SS2 A;  3L89 M;  2JRA A;  3O8E B;  4AYD A;  2B5I D;  3RJ3 D;  1FBR A;  1NWV A;  1Q3X A;  1H03 P;  1H2Q P;  2YRA A;  5HYU B;  2W80 A;  3KZJ A;  4PZ5 A;  4C16 A;  1PDC A;  3OP8 A;  1QGB A;  2XRB A;  2EC3 A;  1U5M A;  3ZD1 A;  1OJY A;  2WII C;  1OK9 A;  2A55 A;  3ZRZ A;  4DJZ A;  2JGX A;  1OK3 A;  1HFI A;  1VVD A;  2CG7 A;  1G4F A;  3R62 A;  1VVC A;  2V5O A;  2CG6 A;  2KRI A;  2W81 A;  2RKZ A;  1E5G A;  1PPQ A;  1HFH A;  1GPZ A;  5FO8 C;  3ZD2 A;  1GKN A;  1E88 A;  3IX0 A;  1J7M A;  2O39 C;  3OXU D;  1Z92 B;  2XWJ I;  1CKL A;  3MQL A;  1O9A A;  1G4G A;  1HCC A;  1QO6 A;  4KKD A;  3EJH A;  1MD7 A;  2RLP A;  2V8E A;  3CAL A;  5HZP B;  4ONT D;  3SW0 X;  4F4O C;  4A5W B;  1MD8 A;  1GXD A;  2EHF A;  2MCY A;  1QUB A;  4JHS A;  5HYP A;  4CSY A;  4B2S A;  2G7I A;  1OJW A;  1CXW A;  3GOV A;  2RL0 A;  2CKU A;  1OJV A;  3IU3 I;  4B2R A;  2JGW A;  2XQW C;  2LOJ A;  1TPM A;  4LOT A;  1KS0 A;  3GXE A;  4K12 A;  2BZM A;  1H8P A;  1GHQ B;  4AYE A;  1UOT P;  1H04 P;  3KXV A;  4J38 B;  4AYI A;  5HYT B;  4IGD A;  2MCZ A;  2UWN A;  3NFP I;  2QY0 A;  5JPM G;  2XWB F;  4LOS A;  2FN2 A;  1L6J A;  1E8B A;  2IZ3 A;  1OK1 A;  1ELV A;  1H2P P;  1OK2 A;  2RLQ A;  4AYM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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