3M7PA

Fibronectin fragment
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
308
structure length
301
Chain Sequence
QPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMAAHEEICTTNEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEEGHMLNCTCWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
source organism Homo sapiens
publication title Zinc Induces Structural Reorganization of Gelatin Binding Domain from Human Fibronectin and Affects Collagen Binding
pubmed doi rcsb
molecule keywords FN1 protein
total genus 66
structure length 301
sequence length 308
ec nomenclature
pdb deposition date 2010-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 3m7pA03
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 3m7pA02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3m7pA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3m7pA04
1Z92B 2O39C 5JPMG 1L6JA 5HZPB 2XRDA 2YBYA 4J38B 3O8EB 4DJZA 1SRZA 2KRIA 3CALA 1G4GA 2JGWA 1G4FA 1H2PP 2RLQA 2EC3A 3ZRZA 4LOSA 1KS0A 4PZ5A 2RL0A 4IGDA 1CXWA 2EHFA 1QGBA 2XWBF 2JRAA 3ZD2A 1OJYA 2QY0A 1O9AA 1PDCA 4LOTA 3T5OA 2W80A 3IX0A 1H8PA 1OK3A 3OXUD 3TVJA 1HFIA 1UOTP 4AYIA 2IZ3A 3L89M 5HYPA 2BZMA 1Q3XA 3NFPI 2MCZA 1CK7A 2FN2A 3SW0X 2ERJA 2XRBA 4B2SA 5HYUB 1H2QP 3M7PA 1PPQA 1QUBA 1H04P 1GXDA 1HCCA 3OEDC 1E88A 2V8EA 1ELVA 3KZJA 3MQLA 5FO8C 1C1ZA 1TPMA 2LOJA 2XQWC 1E8BA 1E5GA 1U5MA 1MD7A 1NWVA 1GKNA 3ZD1A 2JGXA 1FBRA 3R62A 3KXVA 4A5WB 2CG7A 2RLPA 4F4OC 1MD8A 1GHQB 1SS2A 1VVDA 1OK1A 1QO6A 1TPGA 4FXGG 2UWNA 3GXEA 3OP8A 2RKYA 2G7IA 3INBC 1LY2A 1ZJKA 1TPNA 1OJWA 4JHSA 3IU3I 4MUCA 3GOVA 1CKLA 5I0QB 4AYDA 4AYMA 4C16A 3RJ3D 2IZ4A 3ERBA 1EAKA 1H03P 2B5ID 4WJG2 2W81A 2MCYA 5HYTB 2WIIC 1GKGA 2KMSA 2RKZA 1J7MA 2A55A 4ZH1D 1HFHA 2YRAA 1OJVA 2CG6A 1OK9A 2XWJI 4KKDA 1OK2A 4AYEA 2CKUA 4B2RA 1VVCA 2V5OA 4ONTD 4YNXA 4K12A 4CSYA 1GPZA 3EJHA
chains in the Genus database with same CATH superfamily
1Z92B 2O39C 5JPMG 1L6JA 5HZPB 2XRDA 2YBYA 4J38B 3O8EB 4DJZA 1SRZA 2Y2NA 2KRIA 2D49A 3CALA 4MSLA 1G4GA 2JGWA 1G4FA 1H2PP 2RLQA 2EC3A 2Y2GA 3ZRZA 2Y2LA 4OJ6A 4LOSA 1KS0A 4PZ5A 4MB4A 2RL0A 4IGDA 3ZLEA 2JCHA 3L28A 1CXWA 2EHFA 4HMDA 2Y8RA 3FKEA 1QGBA 2BG1A 2XWBF 2JRAA 4IBIA 1YU0A 4QNLA 1OJYA 3ZD2A 1OGBA 2Y2PA 1UR8A 2QY0A 1O9AA 3CI0J 1PDCA 4NZ3A 1E6RA 4LOTA 4PO7A 4LG2A 3T5OA 4NZ1A 2W80A 3IX0A 3KS8A 1H8PA 1OK3A 3OXUD 1W1YA 2IOUA 3TVJA 3WD1A 4IBCA 1HFIA 1UOTP 3L26A 4AYIA 1E6PA 1E6ZA 2UWXA 2IZ3A 3L89M 5HYPA 2BZMA 2XD5A 3N3FA 1AIWA 1Q3XA 2MCZA 3NFPI 1CK7A 2FN2A 3SW0X 4NZ5A 2ERJA 2XRBA 4NY2A 4B2SA 5HYUB 4MB3A 3M7PA 1H2QP 1PPQA 1QUBA 4IBDA 2RTSA 4Z2HA 1GXDA 4Z2KA 1H04P 3L2AA 1HCCA 3FGRA 3K3TA 1ED7A 3OEDC 3KS4A 1E88A 4Z2JA 2V8EA 3L25A 1UR9A 1ELVA 1W1VA 3KZJA 3MQLA 4MB5A 4IBEA 4OJOA 4HMEA 1W1TA 1C1ZA 1TPMA 2LOJA 1E8BA 2XQWC 5FO8C 1E5GA 1U5MA 3NJAA 1YU1A 1MD7A 1NWVA 1H0IA 4GHLA 5DN4A 1GKNA 3ZD1A 4Z2GA 2Y2JA 1FBRA 2JGXA 4N7EA 2X2ZA 3R62A 3KXVA 4A5WB 1W1PA 2CG7A 2RLPA 4APLA 4F4OC 4Z2IA 1MD8A 3F6KA 4NYUA 4IBKA 1GHQB 1GOIA 1SS2A 4GH9A 1VVDA 1OK1A 1QO6A 2Y2IA 1TPGA 2ZYCA 2UWNA 3GXEA 3OP8A 4FXGG 5DN5A 2RKYA 1YU4A 2G7IA 3INBC 2Y8TA 1LY2A 1ZJKA 1TPNA 4IBBA 3VWOA 1E15A 1OJWA 1GPFA 4JHSA 3IU3I 3HONA 4MUCA 4BWCA 1OGGA 3WD0A 3GOVA 2I2LA 1CKLA 2Y2HA 4IBJA 4NYYA 2XD1A 2Y8SA 5I0QB 4AYDA 4AYMA 2FFFB 4C16A 3RJ3D 2Y2QA 2IZ4A 1EAKA 1H03P 1O6IA 2B5ID 3ERBA 4WJG2 2W81A 2Y2MA 2MCYA 1H0GA 2WIIC 3ZLDA 5HYTB 4NZ4A 1E6NA 1GKGA 2KMSA 1YU2A 4TX8A 4HMCA 4IBFA 4IBGA 4IJFA 2RKZA 1J7MA 2A55A 4ZH1D 1HFHA 2YRAA 2JE5A 3WSXA 4OJPA 2Y2OA 1OJVA 3L27A 2CG6A 1OK9A 4YIZA 4OJLA 4GHAA 5BPVA 2XWJI 4OJ5A 4KKDA 1OK2A 3FGTA 4IJEA 4AYEA 2CKUA 4B2RA 1VVCA 3WD2A 3HSHA 2V5OA 1YU3A 3WD4A 3WSYA 4ONTD 4OUIA 4YNXA 1YUEA 3WD3A 3WX7A 4Z2LA 4K12A 1RLHA 2Y2KA 3L29A 4CSYA 1GPZA 3EJHA
chains in the Genus database with same CATH topology
1Z92B 2O39C 5JPMG 1L6JA 5HZPB 2XRDA 2YBYA 4J38B 3O8EB 4DJZA 1SRZA 2KRIA 3CALA 1G4GA 2JGWA 1G4FA 1H2PP 2RLQA 2EC3A 3ZRZA 4LOSA 1KS0A 4PZ5A 2RL0A 4IGDA 1CXWA 2EHFA 1QGBA 2XWBF 2JRAA 3ZD2A 1OJYA 2QY0A 1O9AA 1PDCA 4LOTA 3T5OA 2W80A 3IX0A 1H8PA 1OK3A 3OXUD 3TVJA 1HFIA 1UOTP 4AYIA 2IZ3A 3L89M 5HYPA 2BZMA 1Q3XA 3NFPI 2MCZA 1CK7A 2FN2A 3SW0X 2ERJA 2XRBA 4B2SA 5HYUB 1H2QP 3M7PA 1PPQA 1QUBA 1H04P 1GXDA 1HCCA 3OEDC 1E88A 2V8EA 1ELVA 3KZJA 3MQLA 5FO8C 1C1ZA 1TPMA 2LOJA 2XQWC 1E8BA 1E5GA 1U5MA 1MD7A 1NWVA 1GKNA 3ZD1A 2JGXA 1FBRA 3R62A 3KXVA 4A5WB 2CG7A 2RLPA 4F4OC 1MD8A 1GHQB 1SS2A 1VVDA 1OK1A 1QO6A 1TPGA 4FXGG 2UWNA 3GXEA 3OP8A 2RKYA 2G7IA 3INBC 1LY2A 1ZJKA 1TPNA 1OJWA 4JHSA 3IU3I 4MUCA 3GOVA 1CKLA 5I0QB 4AYDA 4AYMA 4C16A 3RJ3D 2IZ4A 3ERBA 1EAKA 1H03P 2B5ID 4WJG2 2W81A 2MCYA 5HYTB 2WIIC 1GKGA 2KMSA 2RKZA 1J7MA 2A55A 4ZH1D 1HFHA 2YRAA 1OJVA 2CG6A 1OK9A 2XWJI 4KKDA 1OK2A 4AYEA 2CKUA 4B2RA 1VVCA 2V5OA 4ONTD 4YNXA 4K12A 4CSYA 1GPZA 3EJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z92 B;  2O39 C;  5JPM G;  1L6J A;  5HZP B;  2XRD A;  2YBY A;  4J38 B;  3O8E B;  4DJZ A;  1SRZ A;  2KRI A;  3CAL A;  1G4G A;  2JGW A;  1G4F A;  1H2P P;  2RLQ A;  2EC3 A;  3ZRZ A;  4LOS A;  1KS0 A;  4PZ5 A;  2RL0 A;  4IGD A;  1CXW A;  2EHF A;  1QGB A;  2XWB F;  2JRA A;  3ZD2 A;  1OJY A;  2QY0 A;  1O9A A;  1PDC A;  4LOT A;  3T5O A;  2W80 A;  3IX0 A;  1H8P A;  1OK3 A;  3OXU D;  3TVJ A;  1HFI A;  1UOT P;  4AYI A;  2IZ3 A;  3L89 M;  5HYP A;  2BZM A;  1Q3X A;  3NFP I;  2MCZ A;  1CK7 A;  2FN2 A;  3SW0 X;  2ERJ A;  2XRB A;  4B2S A;  5HYU B;  1H2Q P;  3M7P A;  1PPQ A;  1QUB A;  1H04 P;  1GXD A;  1HCC A;  3OED C;  1E88 A;  2V8E A;  1ELV A;  3KZJ A;  3MQL A;  5FO8 C;  1C1Z A;  1TPM A;  2LOJ A;  2XQW C;  1E8B A;  1E5G A;  1U5M A;  1MD7 A;  1NWV A;  1GKN A;  3ZD1 A;  2JGX A;  1FBR A;  3R62 A;  3KXV A;  4A5W B;  2CG7 A;  2RLP A;  4F4O C;  1MD8 A;  1GHQ B;  1SS2 A;  1VVD A;  1OK1 A;  1QO6 A;  1TPG A;  4FXG G;  2UWN A;  3GXE A;  3OP8 A;  2RKY A;  2G7I A;  3INB C;  1LY2 A;  1ZJK A;  1TPN A;  1OJW A;  4JHS A;  3IU3 I;  4MUC A;  3GOV A;  1CKL A;  5I0Q B;  4AYD A;  4AYM A;  4C16 A;  3RJ3 D;  2IZ4 A;  3ERB A;  1EAK A;  1H03 P;  2B5I D;  4WJG 2;  2W81 A;  2MCY A;  5HYT B;  2WII C;  1GKG A;  2KMS A;  2RKZ A;  1J7M A;  2A55 A;  4ZH1 D;  1HFH A;  2YRA A;  1OJV A;  2CG6 A;  1OK9 A;  2XWJ I;  4KKD A;  1OK2 A;  4AYE A;  2CKU A;  4B2R A;  1VVC A;  2V5O A;  4ONT D;  4YNX A;  4K12 A;  4CSY A;  1GPZ A;  3EJH A; 
#chains in the Genus database with same CATH topology
 1Z92 B;  2O39 C;  5JPM G;  1L6J A;  5HZP B;  2XRD A;  2YBY A;  4J38 B;  3O8E B;  4DJZ A;  1SRZ A;  2Y2N A;  2KRI A;  2D49 A;  3CAL A;  4MSL A;  1G4G A;  2JGW A;  1G4F A;  1H2P P;  2RLQ A;  2EC3 A;  2Y2G A;  3ZRZ A;  2Y2L A;  4OJ6 A;  4LOS A;  1KS0 A;  4PZ5 A;  4MB4 A;  2RL0 A;  4IGD A;  3ZLE A;  2JCH A;  3L28 A;  1CXW A;  2EHF A;  4HMD A;  2Y8R A;  3FKE A;  1QGB A;  2BG1 A;  2XWB F;  2JRA A;  4IBI A;  1YU0 A;  4QNL A;  1OJY A;  3ZD2 A;  1OGB A;  2Y2P A;  1UR8 A;  2QY0 A;  1O9A A;  3CI0 J;  1PDC A;  4NZ3 A;  1E6R A;  4LOT A;  4PO7 A;  4LG2 A;  3T5O A;  4NZ1 A;  2W80 A;  3IX0 A;  3KS8 A;  1H8P A;  1OK3 A;  3OXU D;  1W1Y A;  2IOU A;  3TVJ A;  3WD1 A;  4IBC A;  1HFI A;  1UOT P;  3L26 A;  4AYI A;  1E6P A;  1E6Z A;  2UWX A;  2IZ3 A;  3L89 M;  5HYP A;  2BZM A;  2XD5 A;  3N3F A;  1AIW A;  1Q3X A;  2MCZ A;  3NFP I;  1CK7 A;  2FN2 A;  3SW0 X;  4NZ5 A;  2ERJ A;  2XRB A;  4NY2 A;  4B2S A;  5HYU B;  4MB3 A;  3M7P A;  1H2Q P;  1PPQ A;  1QUB A;  4IBD A;  2RTS A;  4Z2H A;  1GXD A;  4Z2K A;  1H04 P;  3L2A A;  1HCC A;  3FGR A;  3K3T A;  1ED7 A;  3OED C;  3KS4 A;  1E88 A;  4Z2J A;  2V8E A;  3L25 A;  1UR9 A;  1ELV A;  1W1V A;  3KZJ A;  3MQL A;  4MB5 A;  4IBE A;  4OJO A;  4HME A;  1W1T A;  1C1Z A;  1TPM A;  2LOJ A;  1E8B A;  2XQW C;  5FO8 C;  1E5G A;  1U5M A;  3NJA A;  1YU1 A;  1MD7 A;  1NWV A;  1H0I A;  4GHL A;  5DN4 A;  1GKN A;  3ZD1 A;  4Z2G A;  2Y2J A;  1FBR A;  2JGX A;  4N7E A;  2X2Z A;  3R62 A;  3KXV A;  4A5W B;  1W1P A;  2CG7 A;  2RLP A;  4APL A;  4F4O C;  4Z2I A;  1MD8 A;  3F6K A;  4NYU A;  4IBK A;  1GHQ B;  1GOI A;  1SS2 A;  4GH9 A;  1VVD A;  1OK1 A;  1QO6 A;  2Y2I A;  1TPG A;  2ZYC A;  2UWN A;  3GXE A;  3OP8 A;  4FXG G;  5DN5 A;  2RKY A;  1YU4 A;  2G7I A;  3INB C;  2Y8T A;  1LY2 A;  1ZJK A;  1TPN A;  4IBB A;  3VWO A;  1E15 A;  1OJW A;  1GPF A;  4JHS A;  3IU3 I;  3HON A;  4MUC A;  4BWC A;  1OGG A;  3WD0 A;  3GOV A;  2I2L A;  1CKL A;  2Y2H A;  4IBJ A;  4NYY A;  2XD1 A;  2Y8S A;  5I0Q B;  4AYD A;  4AYM A;  2FFF B;  4C16 A;  3RJ3 D;  2Y2Q A;  2IZ4 A;  1EAK A;  1H03 P;  1O6I A;  2B5I D;  3ERB A;  4WJG 2;  2W81 A;  2Y2M A;  2MCY A;  1H0G A;  2WII C;  3ZLD A;  5HYT B;  4NZ4 A;  1E6N A;  1GKG A;  2KMS A;  1YU2 A;  4TX8 A;  4HMC A;  4IBF A;  4IBG A;  4IJF A;  2RKZ A;  1J7M A;  2A55 A;  4ZH1 D;  1HFH A;  2YRA A;  2JE5 A;  3WSX A;  4OJP A;  2Y2O A;  1OJV A;  3L27 A;  2CG6 A;  1OK9 A;  4YIZ A;  4OJL A;  4GHA A;  5BPV A;  2XWJ I;  4OJ5 A;  4KKD A;  1OK2 A;  3FGT A;  4IJE A;  4AYE A;  2CKU A;  4B2R A;  1VVC A;  3WD2 A;  3HSH A;  2V5O A;  1YU3 A;  3WD4 A;  3WSY A;  4ONT D;  4OUI A;  4YNX A;  1YUE A;  3WD3 A;  3WX7 A;  4Z2L A;  4K12 A;  1RLH A;  2Y2K A;  3L29 A;  4CSY A;  1GPZ A;  3EJH A; 
#chains in the Genus database with same CATH homology
 1Z92 B;  2O39 C;  5JPM G;  1L6J A;  5HZP B;  2XRD A;  2YBY A;  4J38 B;  3O8E B;  4DJZ A;  1SRZ A;  2KRI A;  3CAL A;  1G4G A;  2JGW A;  1G4F A;  1H2P P;  2RLQ A;  2EC3 A;  3ZRZ A;  4LOS A;  1KS0 A;  4PZ5 A;  2RL0 A;  4IGD A;  1CXW A;  2EHF A;  1QGB A;  2XWB F;  2JRA A;  3ZD2 A;  1OJY A;  2QY0 A;  1O9A A;  1PDC A;  4LOT A;  3T5O A;  2W80 A;  3IX0 A;  1H8P A;  1OK3 A;  3OXU D;  3TVJ A;  1HFI A;  1UOT P;  4AYI A;  2IZ3 A;  3L89 M;  5HYP A;  2BZM A;  1Q3X A;  3NFP I;  2MCZ A;  1CK7 A;  2FN2 A;  3SW0 X;  2ERJ A;  2XRB A;  4B2S A;  5HYU B;  1H2Q P;  3M7P A;  1PPQ A;  1QUB A;  1H04 P;  1GXD A;  1HCC A;  3OED C;  1E88 A;  2V8E A;  1ELV A;  3KZJ A;  3MQL A;  5FO8 C;  1C1Z A;  1TPM A;  2LOJ A;  2XQW C;  1E8B A;  1E5G A;  1U5M A;  1MD7 A;  1NWV A;  1GKN A;  3ZD1 A;  2JGX A;  1FBR A;  3R62 A;  3KXV A;  4A5W B;  2CG7 A;  2RLP A;  4F4O C;  1MD8 A;  1GHQ B;  1SS2 A;  1VVD A;  1OK1 A;  1QO6 A;  1TPG A;  4FXG G;  2UWN A;  3GXE A;  3OP8 A;  2RKY A;  2G7I A;  3INB C;  1LY2 A;  1ZJK A;  1TPN A;  1OJW A;  4JHS A;  3IU3 I;  4MUC A;  3GOV A;  1CKL A;  5I0Q B;  4AYD A;  4AYM A;  4C16 A;  3RJ3 D;  2IZ4 A;  3ERB A;  1EAK A;  1H03 P;  2B5I D;  4WJG 2;  2W81 A;  2MCY A;  5HYT B;  2WII C;  1GKG A;  2KMS A;  2RKZ A;  1J7M A;  2A55 A;  4ZH1 D;  1HFH A;  2YRA A;  1OJV A;  2CG6 A;  1OK9 A;  2XWJ I;  4KKD A;  1OK2 A;  4AYE A;  2CKU A;  4B2R A;  1VVC A;  2V5O A;  4ONT D;  4YNX A;  4K12 A;  4CSY A;  1GPZ A;  3EJH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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