3M7PA

Fibronectin fragment
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
308
structure length
301
Chain Sequence
QPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMAAHEEICTTNEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEEGHMLNCTCWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
source organism Homo sapiens
publication title Zinc Induces Structural Reorganization of Gelatin Binding Domain from Human Fibronectin and Affects Collagen Binding
pubmed doi rcsb
molecule keywords FN1 protein
total genus 66
structure length 301
sequence length 308
ec nomenclature
pdb deposition date 2010-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 3m7pA03
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 3m7pA02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3m7pA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3m7pA04
1GPZA 1ZJKA 2XRBA 5HYUB 3EJHA 1O9AA 1OJYA 1CK7A 1H2QP 1VVCA 4FXGG 2A55A 2EHFA 1H2PP 1HCCA 3OXUD 3TVJA 2QY0A 1OK9A 4A5WB 4DJZA 5HYPA 2JGXA 1U5MA 1OJVA 1Z92B 3IX0A 3RJ3D 3ZRZA 1H8PA 1MD8A 1SS2A 1G4FA 3O8EB 2RLQA 1H03P 4B2SA 2G7IA 1OK3A 4LOSA 4B2RA 1EAKA 3ZD2A 3OP8A 2XQWC 4CSYA 1OJWA 2XRDA 2EC3A 1E8BA 4IGDA 2YRAA 4AYDA 1J7MA 2WIIC 2JGWA 1QO6A 2XWJI 1GKNA 2CG7A 1CXWA 3IU3I 2CG6A 4JHSA 3NFPI 1C1ZA 3INBC 3ZD1A 4AYMA 2RLPA 2W81A 4F4OC 1OK1A 2V8EA 1UOTP 2MCYA 3CALA 3KXVA 5HYTB 1PDCA 1L6JA 3SW0X 2KMSA 1HFHA 2UWNA 4MUCA 1SRZA 1PPQA 1QGBA 1NWVA 2JRAA 4YNXA 1E88A 1KS0A 1HFIA 4ONTD 1G4GA 2RKZA 1ELVA 1LY2A 4J38B 2RKYA 2YBYA 1OK2A 1FBRA 3GXEA 4PZ5A 3T5OA 2MCZA 5JPMG 5FO8C 1H04P 4WJG2 1CKLA 3R62A 2W80A 1TPGA 3M7PA 2ERJA 2B5ID 2RL0A 3ERBA 2BZMA 2O39C 1TPMA 3GOVA 4C16A 5HZPB 1TPNA 2V5OA 2IZ3A 2IZ4A 4KKDA 1E5GA 1GHQB 3MQLA 2FN2A 4K12A 5I0QB 4LOTA 2CKUA 1MD7A 3OEDC 1QUBA 4ZH1D 3L89M 1VVDA 1GKGA 3KZJA 4AYEA 1Q3XA 2LOJA 1GXDA 2KRIA 4AYIA 2XWBF
chains in the Genus database with same CATH superfamily
1GPZA 1ZJKA 4Z2KA 1W1PA 4C16A 4APLA 1OGGA 1O6IA 2XRBA 4OJ6A 3EJHA 5HYUB 2BG1A 1O9AA 4NZ4A 1OJYA 1CK7A 1H2QP 1VVCA 3L29A 4HMDA 4NYUA 2JE5A 1YU0A 4Z2JA 2A55A 1OGBA 2EHFA 1H2PP 1HCCA 3KS4A 4N7EA 3OXUD 3TVJA 3HSHA 3L27A 4Z2HA 2QY0A 3CI0J 1YU2A 3L2AA 1OK9A 4A5WB 4DJZA 5HYPA 2JGXA 3WD1A 1OJVA 1U5MA 1E15A 1Z92B 3IX0A 3RJ3D 3ZRZA 3FKEA 1H8PA 1MD8A 2Y2OA 1SS2A 4GH9A 1G4FA 3O8EB 1YU3A 2Y8RA 2RLQA 1H03P 2Y2GA 4B2SA 2G7IA 1OK3A 4LOSA 4IBJA 4NZ5A 4IBDA 3KS8A 4B2RA 1E6RA 1GPFA 5HZPB 1EAKA 5DN4A 3ZD2A 3WSXA 3FGTA 3OP8A 3WD3A 2XQWC 4CSYA 1OJWA 4NZ1A 2XD5A 2XRDA 1W1TA 2EC3A 1E8BA 4IGDA 2YRAA 4AYDA 2Y2NA 3N3FA 1J7MA 2WIIC 1W1YA 2JGWA 4OJ5A 1QO6A 4HMEA 2XWJI 4NY2A 3ZLDA 1GKNA 2JCHA 2CG7A 1H0GA 1CXWA 2Y2JA 3IU3I 1YU4A 2CG6A 4IJEA 4JHSA 3F6KA 3NFPI 4Z2IA 1C1ZA 3INBC 2XD1A 4FXGG 3ZD1A 2RLPA 3ZLEA 4AYMA 1E6PA 4IBFA 2W81A 4F4OC 5DN5A 1UR8A 3L28A 1OK1A 2V8EA 1E6NA 1UOTP 4LG2A 2MCYA 3CALA 3KXVA 5HYTB 1PDCA 2X2ZA 3L25A 1W1VA 2Y2IA 1L6JA 3SW0X 4HMCA 2KMSA 4MB3A 4GHLA 1AIWA 1HFHA 1ED7A 2UWNA 4MUCA 1SRZA 1YU1A 4MB4A 1PPQA 1QGBA 1NWVA 2JRAA 4YNXA 1E88A 1KS0A 1HFIA 3WSYA 4BWCA 3L26A 4ONTD 4GHAA 1G4GA 4Z2LA 2RKZA 1ELVA 1LY2A 4NYYA 4J38B 2RKYA 2Y2PA 4OJOA 2YBYA 1OK2A 4Z2GA 4YIZA 2Y2KA 3WX7A 1FBRA 3GXEA 4PZ5A 3T5OA 2MCZA 5JPMG 3K3TA 5FO8C 3HONA 1H04P 1CKLA 4IBBA 4WJG2 3VWOA 4OUIA 3R62A 2W80A 1H0IA 2UWXA 2I2LA 1YUEA 1TPGA 3M7PA 2ERJA 2B5ID 2IOUA 2RL0A 2RTSA 2Y2MA 3ERBA 2BZMA 4IJFA 1TPMA 2O39C 2ZYCA 3GOVA 3NJAA 1TPNA 2V5OA 4MSLA 2IZ3A 2IZ4A 3WD2A 4KKDA 4IBKA 4IBCA 1E5GA 1GHQB 3MQLA 2Y8TA 2FN2A 5BPVA 4K12A 5I0QB 4MB5A 4LOTA 4IBIA 4NZ3A 3WD4A 3WD0A 1GOIA 2CKUA 1E6ZA 1MD7A 1RLHA 3OEDC 4IBEA 2Y2HA 1QUBA 4ZH1D 2Y2LA 4IBGA 3L89M 1VVDA 2FFFB 2D49A 1GKGA 3FGRA 4QNLA 4PO7A 3KZJA 2Y2QA 2Y8SA 1UR9A 4OJLA 4TX8A 1Q3XA 4AYEA 2LOJA 1GXDA 2KRIA 4AYIA 2XWBF 4OJPA
chains in the Genus database with same CATH topology
1GPZA 1ZJKA 2XRBA 5HYUB 3EJHA 1O9AA 1OJYA 1CK7A 1H2QP 1VVCA 4FXGG 2A55A 2EHFA 1H2PP 1HCCA 3OXUD 3TVJA 2QY0A 1OK9A 4A5WB 4DJZA 5HYPA 2JGXA 1U5MA 1OJVA 1Z92B 3IX0A 3RJ3D 3ZRZA 1H8PA 1MD8A 1SS2A 1G4FA 3O8EB 2RLQA 1H03P 4B2SA 2G7IA 1OK3A 4LOSA 4B2RA 1EAKA 3ZD2A 3OP8A 2XQWC 4CSYA 1OJWA 2XRDA 2EC3A 1E8BA 4IGDA 2YRAA 4AYDA 1J7MA 2WIIC 2JGWA 1QO6A 2XWJI 1GKNA 2CG7A 1CXWA 3IU3I 2CG6A 4JHSA 3NFPI 1C1ZA 3INBC 3ZD1A 4AYMA 2RLPA 2W81A 4F4OC 1OK1A 2V8EA 1UOTP 2MCYA 3CALA 3KXVA 5HYTB 1PDCA 1L6JA 3SW0X 2KMSA 1HFHA 2UWNA 4MUCA 1SRZA 1PPQA 1QGBA 1NWVA 2JRAA 4YNXA 1E88A 1KS0A 1HFIA 4ONTD 1G4GA 2RKZA 1ELVA 1LY2A 4J38B 2RKYA 2YBYA 1OK2A 1FBRA 3GXEA 4PZ5A 3T5OA 2MCZA 5JPMG 5FO8C 1H04P 4WJG2 1CKLA 3R62A 2W80A 1TPGA 3M7PA 2ERJA 2B5ID 2RL0A 3ERBA 2BZMA 2O39C 1TPMA 3GOVA 4C16A 5HZPB 1TPNA 2V5OA 2IZ3A 2IZ4A 4KKDA 1E5GA 1GHQB 3MQLA 2FN2A 4K12A 5I0QB 4LOTA 2CKUA 1MD7A 3OEDC 1QUBA 4ZH1D 3L89M 1VVDA 1GKGA 3KZJA 4AYEA 1Q3XA 2LOJA 1GXDA 2KRIA 4AYIA 2XWBF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPZ A;  1ZJK A;  2XRB A;  5HYU B;  3EJH A;  1O9A A;  1OJY A;  1CK7 A;  1H2Q P;  1VVC A;  4FXG G;  2A55 A;  2EHF A;  1H2P P;  1HCC A;  3OXU D;  3TVJ A;  2QY0 A;  1OK9 A;  4A5W B;  4DJZ A;  5HYP A;  2JGX A;  1U5M A;  1OJV A;  1Z92 B;  3IX0 A;  3RJ3 D;  3ZRZ A;  1H8P A;  1MD8 A;  1SS2 A;  1G4F A;  3O8E B;  2RLQ A;  1H03 P;  4B2S A;  2G7I A;  1OK3 A;  4LOS A;  4B2R A;  1EAK A;  3ZD2 A;  3OP8 A;  2XQW C;  4CSY A;  1OJW A;  2XRD A;  2EC3 A;  1E8B A;  4IGD A;  2YRA A;  4AYD A;  1J7M A;  2WII C;  2JGW A;  1QO6 A;  2XWJ I;  1GKN A;  2CG7 A;  1CXW A;  3IU3 I;  2CG6 A;  4JHS A;  3NFP I;  1C1Z A;  3INB C;  3ZD1 A;  4AYM A;  2RLP A;  2W81 A;  4F4O C;  1OK1 A;  2V8E A;  1UOT P;  2MCY A;  3CAL A;  3KXV A;  5HYT B;  1PDC A;  1L6J A;  3SW0 X;  2KMS A;  1HFH A;  2UWN A;  4MUC A;  1SRZ A;  1PPQ A;  1QGB A;  1NWV A;  2JRA A;  4YNX A;  1E88 A;  1KS0 A;  1HFI A;  4ONT D;  1G4G A;  2RKZ A;  1ELV A;  1LY2 A;  4J38 B;  2RKY A;  2YBY A;  1OK2 A;  1FBR A;  3GXE A;  4PZ5 A;  3T5O A;  2MCZ A;  5JPM G;  5FO8 C;  1H04 P;  4WJG 2;  1CKL A;  3R62 A;  2W80 A;  1TPG A;  3M7P A;  2ERJ A;  2B5I D;  2RL0 A;  3ERB A;  2BZM A;  2O39 C;  1TPM A;  3GOV A;  4C16 A;  5HZP B;  1TPN A;  2V5O A;  2IZ3 A;  2IZ4 A;  4KKD A;  1E5G A;  1GHQ B;  3MQL A;  2FN2 A;  4K12 A;  5I0Q B;  4LOT A;  2CKU A;  1MD7 A;  3OED C;  1QUB A;  4ZH1 D;  3L89 M;  1VVD A;  1GKG A;  3KZJ A;  4AYE A;  1Q3X A;  2LOJ A;  1GXD A;  2KRI A;  4AYI A;  2XWB F; 
#chains in the Genus database with same CATH topology
 1GPZ A;  1ZJK A;  4Z2K A;  1W1P A;  4C16 A;  4APL A;  1OGG A;  1O6I A;  2XRB A;  4OJ6 A;  3EJH A;  5HYU B;  2BG1 A;  1O9A A;  4NZ4 A;  1OJY A;  1CK7 A;  1H2Q P;  1VVC A;  3L29 A;  4HMD A;  4NYU A;  2JE5 A;  1YU0 A;  4Z2J A;  2A55 A;  1OGB A;  2EHF A;  1H2P P;  1HCC A;  3KS4 A;  4N7E A;  3OXU D;  3TVJ A;  3HSH A;  3L27 A;  4Z2H A;  2QY0 A;  3CI0 J;  1YU2 A;  3L2A A;  1OK9 A;  4A5W B;  4DJZ A;  5HYP A;  2JGX A;  3WD1 A;  1OJV A;  1U5M A;  1E15 A;  1Z92 B;  3IX0 A;  3RJ3 D;  3ZRZ A;  3FKE A;  1H8P A;  1MD8 A;  2Y2O A;  1SS2 A;  4GH9 A;  1G4F A;  3O8E B;  1YU3 A;  2Y8R A;  2RLQ A;  1H03 P;  2Y2G A;  4B2S A;  2G7I A;  1OK3 A;  4LOS A;  4IBJ A;  4NZ5 A;  4IBD A;  3KS8 A;  4B2R A;  1E6R A;  1GPF A;  5HZP B;  1EAK A;  5DN4 A;  3ZD2 A;  3WSX A;  3FGT A;  3OP8 A;  3WD3 A;  2XQW C;  4CSY A;  1OJW A;  4NZ1 A;  2XD5 A;  2XRD A;  1W1T A;  2EC3 A;  1E8B A;  4IGD A;  2YRA A;  4AYD A;  2Y2N A;  3N3F A;  1J7M A;  2WII C;  1W1Y A;  2JGW A;  4OJ5 A;  1QO6 A;  4HME A;  2XWJ I;  4NY2 A;  3ZLD A;  1GKN A;  2JCH A;  2CG7 A;  1H0G A;  1CXW A;  2Y2J A;  3IU3 I;  1YU4 A;  2CG6 A;  4IJE A;  4JHS A;  3F6K A;  3NFP I;  4Z2I A;  1C1Z A;  3INB C;  2XD1 A;  4FXG G;  3ZD1 A;  2RLP A;  3ZLE A;  4AYM A;  1E6P A;  4IBF A;  2W81 A;  4F4O C;  5DN5 A;  1UR8 A;  3L28 A;  1OK1 A;  2V8E A;  1E6N A;  1UOT P;  4LG2 A;  2MCY A;  3CAL A;  3KXV A;  5HYT B;  1PDC A;  2X2Z A;  3L25 A;  1W1V A;  2Y2I A;  1L6J A;  3SW0 X;  4HMC A;  2KMS A;  4MB3 A;  4GHL A;  1AIW A;  1HFH A;  1ED7 A;  2UWN A;  4MUC A;  1SRZ A;  1YU1 A;  4MB4 A;  1PPQ A;  1QGB A;  1NWV A;  2JRA A;  4YNX A;  1E88 A;  1KS0 A;  1HFI A;  3WSY A;  4BWC A;  3L26 A;  4ONT D;  4GHA A;  1G4G A;  4Z2L A;  2RKZ A;  1ELV A;  1LY2 A;  4NYY A;  4J38 B;  2RKY A;  2Y2P A;  4OJO A;  2YBY A;  1OK2 A;  4Z2G A;  4YIZ A;  2Y2K A;  3WX7 A;  1FBR A;  3GXE A;  4PZ5 A;  3T5O A;  2MCZ A;  5JPM G;  3K3T A;  5FO8 C;  3HON A;  1H04 P;  1CKL A;  4IBB A;  4WJG 2;  3VWO A;  4OUI A;  3R62 A;  2W80 A;  1H0I A;  2UWX A;  2I2L A;  1YUE A;  1TPG A;  3M7P A;  2ERJ A;  2B5I D;  2IOU A;  2RL0 A;  2RTS A;  2Y2M A;  3ERB A;  2BZM A;  4IJF A;  1TPM A;  2O39 C;  2ZYC A;  3GOV A;  3NJA A;  1TPN A;  2V5O A;  4MSL A;  2IZ3 A;  2IZ4 A;  3WD2 A;  4KKD A;  4IBK A;  4IBC A;  1E5G A;  1GHQ B;  3MQL A;  2Y8T A;  2FN2 A;  5BPV A;  4K12 A;  5I0Q B;  4MB5 A;  4LOT A;  4IBI A;  4NZ3 A;  3WD4 A;  3WD0 A;  1GOI A;  2CKU A;  1E6Z A;  1MD7 A;  1RLH A;  3OED C;  4IBE A;  2Y2H A;  1QUB A;  4ZH1 D;  2Y2L A;  4IBG A;  3L89 M;  1VVD A;  2FFF B;  2D49 A;  1GKG A;  3FGR A;  4QNL A;  4PO7 A;  3KZJ A;  2Y2Q A;  2Y8S A;  1UR9 A;  4OJL A;  4TX8 A;  1Q3X A;  4AYE A;  2LOJ A;  1GXD A;  2KRI A;  4AYI A;  2XWB F;  4OJP A; 
#chains in the Genus database with same CATH homology
 1GPZ A;  1ZJK A;  2XRB A;  5HYU B;  3EJH A;  1O9A A;  1OJY A;  1CK7 A;  1H2Q P;  1VVC A;  4FXG G;  2A55 A;  2EHF A;  1H2P P;  1HCC A;  3OXU D;  3TVJ A;  2QY0 A;  1OK9 A;  4A5W B;  4DJZ A;  5HYP A;  2JGX A;  1U5M A;  1OJV A;  1Z92 B;  3IX0 A;  3RJ3 D;  3ZRZ A;  1H8P A;  1MD8 A;  1SS2 A;  1G4F A;  3O8E B;  2RLQ A;  1H03 P;  4B2S A;  2G7I A;  1OK3 A;  4LOS A;  4B2R A;  1EAK A;  3ZD2 A;  3OP8 A;  2XQW C;  4CSY A;  1OJW A;  2XRD A;  2EC3 A;  1E8B A;  4IGD A;  2YRA A;  4AYD A;  1J7M A;  2WII C;  2JGW A;  1QO6 A;  2XWJ I;  1GKN A;  2CG7 A;  1CXW A;  3IU3 I;  2CG6 A;  4JHS A;  3NFP I;  1C1Z A;  3INB C;  3ZD1 A;  4AYM A;  2RLP A;  2W81 A;  4F4O C;  1OK1 A;  2V8E A;  1UOT P;  2MCY A;  3CAL A;  3KXV A;  5HYT B;  1PDC A;  1L6J A;  3SW0 X;  2KMS A;  1HFH A;  2UWN A;  4MUC A;  1SRZ A;  1PPQ A;  1QGB A;  1NWV A;  2JRA A;  4YNX A;  1E88 A;  1KS0 A;  1HFI A;  4ONT D;  1G4G A;  2RKZ A;  1ELV A;  1LY2 A;  4J38 B;  2RKY A;  2YBY A;  1OK2 A;  1FBR A;  3GXE A;  4PZ5 A;  3T5O A;  2MCZ A;  5JPM G;  5FO8 C;  1H04 P;  4WJG 2;  1CKL A;  3R62 A;  2W80 A;  1TPG A;  3M7P A;  2ERJ A;  2B5I D;  2RL0 A;  3ERB A;  2BZM A;  2O39 C;  1TPM A;  3GOV A;  4C16 A;  5HZP B;  1TPN A;  2V5O A;  2IZ3 A;  2IZ4 A;  4KKD A;  1E5G A;  1GHQ B;  3MQL A;  2FN2 A;  4K12 A;  5I0Q B;  4LOT A;  2CKU A;  1MD7 A;  3OED C;  1QUB A;  4ZH1 D;  3L89 M;  1VVD A;  1GKG A;  3KZJ A;  4AYE A;  1Q3X A;  2LOJ A;  1GXD A;  2KRI A;  4AYI A;  2XWB F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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