The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
69
|
sequence length |
268
|
structure length |
249
|
Chain Sequence |
RQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Detailed Architecture of a DNA Translocating Machine: The High-Resolution Structure of the Bacteriophage Phi29 Connector Particle.
pubmed doi rcsb |
| molecule tags |
Virus
|
| source organism |
Bacteriophage phi-29
|
| molecule keywords |
UPPER COLLAR PROTEIN
|
| total genus |
69
|
| structure length |
249
|
| sequence length |
268
|
| chains with identical sequence |
B, C
|
| ec nomenclature | |
| pdb deposition date | 2001-05-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05352 | Phage_connector | Phage Connector (GP10) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
| Mainly Beta | Beta Barrel | Upper collar protein gp10 (connector protein) fold | Upper collar protein gp10 (connector protein) | ||
| Alpha Beta | 2-Layer Sandwich | Crambin | Bacteriophage PHI-29 conector. Domain 3 |
#chains in the Genus database with same CATH superfamily 1JNB A; 1IJG A; 1FOU A; 1H5W A; #chains in the Genus database with same CATH topology 3DC5 A; 2I2Z A; 1MM8 A; 4FC1 A; 1NBL A; 1CXR A; 1BJ5 A; 2CDY A; 4PO0 A; 2QKA A; 1AP6 A; 3PLA A; 3NVK A; 4BKE A; 5HOZ A; 2EFH A; 1IX9 A; 3TDL A; 2V36 A; 3B9L A; 3NVI A; 1CCN A; 4LB9 A; 2VDB A; 1WUW A; 3DC6 A; 1JMP A; 4C31 B; 2OZB B; 3H3A A; 4LB2 A; 2BXG A; 1E7A A; 1MIW A; 1BSM A; 3CEI A; 3ICX A; 4E99 A; 2BXM A; 4NAW B; 2FD7 A; 2DBX A; 3TJT A; 4FJC B; 1XDC A; 1XIL A; 1J7E A; 1H9Z A; 3A75 A; 2EYB A; 4BR6 A; 4OTT A; 2QM6 A; 3KJL A; 1FOU A; 4OT2 A; 1PL4 A; 1ORL A; 2BXC A; 2BXO A; 1D5N A; 1JXX A; 4K71 A; 1TF0 A; 4E4E A; 2LOQ A; 5IFO A; 4GUN A; 2EFC A; 1HK3 A; 1ZUQ A; 3VQI A; 3M99 C; 2ROH A; 3WHR A; 1AP5 A; 3JRY A; 2XVU A; 4OR0 A; 1IJG A; 1JA8 A; 3G9K D; 1MMM A; 4X9Q A; 1LNS A; 2BXE A; 1N5U A; 2XW0 A; 3GQX A; 2LQI A; 4Z9O A; 1LOT A; 4LUF A; 4GDK B; 4D7X A; 4I9O A; 5GIP A; 4YIP A; 5ID9 A; 3KDR A; 1GN3 A; 5GIO A; 1EN4 A; 4L9K A; 2FD9 A; 3AK1 A; 1ZLZ A; 5IIU A; 3LU7 A; 1BKE A; 4TQ0 A; 2VUE A; 1VEW A; 1MIY A; 5A9G A; 4JK4 A; 5IJ5 A; 1E7I A; 4ZBK A; 3LU8 A; 4EMX A; 3NMU A; 1YVA A; 1MIV A; 2LQH A; 4GG2 A; 4L8U A; 2ADQ B; 3MDS A; 3QVN A; 2XW1 A; 2QHB A; 1KXP D; 3CX9 A; 3SIV B; 1JR9 A; 3FWC C; 3KKY A; 1MUS A; 3UE7 B; 5GIN A; 2LXT A; 2OT3 A; 2Z8K A; 1I08 A; 4L9Q A; 1MA9 A; 1MUH A; 4OTU A; 3FWB C; 5IIX A; 1WB8 A; 1E78 A; 2BXN A; 2XSI A; 2XVV A; 1CBN A; 3V08 A; 1VZS A; 3RN4 A; 3ECP A; 2RCV A; 4N3Z A; 1CRN A; 1BT8 A; 1AR5 A; 1UOR A; 4G01 A; 2BXF A; 2EYD A; 4DHX B; 3WHQ A; 1E7H A; 3C3T A; 3MHS B; 4C7U A; 1MNG A; 2KBZ A; 2VUF A; 2EYC A; 1CCM A; 1WB7 A; 1B06 A; 2Z8J A; 1E7E A; 4DM0 A; 3SZS A; 4S1Y A; 2AW9 A; 1I0H A; 2NNW A; 2AGH B; 1YV8 A; 1Y67 A; 1HA2 A; 1XUQ A; 3SIU B; 4FIP B; 2BXB A; 1OKH A; 1VAR A; 5BPK A; 3UIV A; 2CE4 A; 5DBY A; 2E0Y A; 4ZCG A; 5D7G A; 3LSU A; 5IJF A; 2DG5 A; 1QNM A; 1JXW A; 2QMC A; 1GN6 A; 4K2C A; 1KW2 A; 2BXD A; 3WHS A; 2CKX A; 2XMO A; 1EM1 A; 1XRE A; 5DQF A; 1ZSP A; 4HGK A; 4JZG A; 3JQZ A; 1JXY A; 2LXS A; 1E7C A; 1JNB A; 4LUH A; 4W4U B; 2BXP A; 4J2V A; 1LUW A; 3H37 A; 4N0F D; 2AJE A; 3KIK A; 1JXU A; 1J78 A; 3V09 A; 1MA1 A; 2PLH A; 3LU6 A; 1P7G A; 5AG2 A; 1MSD A; 2GDS A; 1PM9 A; 3K9S A; 2DYM A; 1GNJ A; 2KWF A; 2DYO A; 1HK4 A; 3NVM A; 2EFD A; 1CNR A; 1BHP A; 1O9X A; 1JMN A; 1EJG A; 1LUV A; 1GN2 A; 1SZX A; 2JUH A; 1SB0 A; 4F5T A; 3B9M A; 3BPJ A; 3W1S A; 1AR4 A; 4GDL B; 4JZ2 A; 1E7F A; 5IJE A; 1IDS A; 5GHK A; 4LA0 A; 2XVQ A; 1AB1 A; 2I30 A; 4F5S A; 2EFE A; 1GNI A; 2V9B A; 1ED0 A; 5ID7 A; 3C8P A; 4M70 B; 1AVM A; 2BX8 A; 2Z8I A; 1JXT A; 2YDF A; 1NT2 B; 4ZUX V; 4Z69 A; 1TXU A; 4HGM B; 1EN5 A; 1E7B A; 1KKC A; 1ZTE A; 3GA9 L; 2P4K A; 2BXA A; 4F5V A; 5IIH A; 1KDX A; 1E7G A; 4N0U D; 3GQU A; 4G03 A; 2BXL A; 2GUT A; 3V03 A; 1N0J A; 4YIO A; 3BFR A; 4IW1 A; 3SQJ A; 3C3S A; 3EVK A; 2BXI A; 2DBW A; 1EN6 A; 1AO6 A; 1HK1 A; 4G04 A; 2XVW A; 4F6E A; 2DBU A; 1VFI A; 4ZC6 A; 3FNM A; 4ZBQ A; 2BXK A; 5FUO A; 4BY9 C; 1HK2 A; 2E0X A; 3NIR A; 4MBE C; 1BS3 A; 3OT7 A; 3U7T A; 3MHH B; 2BXQ A; 3A73 A; 2ADP A; 1IXB A; 4TQ1 A; 3AK3 A; 4WA6 B; 3AK2 A; 4ZBR A; 2EYA A; 1N0N A; 4JYY A; 1HK5 A; 4FK5 B; 4GDX A; 1BM0 A; 2K0N A; 1H5W A; 2NQO A; 2QKC A; 1GN4 A; 4F5U A; 4FFK A; 2BXH A; 5B5T A; 4IW2 A; #chains in the Genus database with same CATH homology 5ID9 A; 2NNW A; 2I2Z A; 5GIO A; 4L9K A; 2I30 A; 4F5S A; 1HA2 A; 2EFE A; 1BJ5 A; 1GNI A; 3SIU B; 4FIP B; 4PO0 A; 5ID7 A; 2BXB A; 3PLA A; 5IIU A; 3NVK A; 4BKE A; 4M70 B; 5HOZ A; 3LU7 A; 3UIV A; 1BKE A; 5BPK A; 2EFH A; 4TQ0 A; 2BX8 A; 2Z8I A; 3TDL A; 5DBY A; 2E0Y A; 4ZCG A; 2V36 A; 2VUE A; 2YDF A; 5D7G A; 1NT2 B; 3B9L A; 1MIY A; 5IJF A; 4ZUX V; 2DG5 A; 3NVI A; 4Z69 A; 4JK4 A; 1TXU A; 5IJ5 A; 2QMC A; 1E7I A; 4HGM B; 4ZBK A; 4LB9 A; 2VDB A; 3LU8 A; 4K2C A; 1KW2 A; 1E7B A; 2BXD A; 4EMX A; 4C31 B; 2OZB B; 3WHS A; 3NMU A; 3H3A A; 2CKX A; 2XMO A; 1MIV A; 4GG2 A; 4LB2 A; 2BXG A; 1E7A A; 3GA9 L; 4L8U A; 1MIW A; 2BXA A; 5DQF A; 3ICX A; 4E99 A; 2BXM A; 4NAW B; 4HGK A; 4F5V A; 3JQZ A; 5IIH A; 2XW1 A; 1E7G A; 4N0U D; 2QHB A; 1E7C A; 1KXP D; 3CX9 A; 1JNB A; 4LUH A; 4W4U B; 3SIV B; 2BXP A; 3GQU A; 4J2V A; 4G03 A; 2BXL A; 3V03 A; 2DBX A; 3H37 A; 3FWC C; 4FJC B; 4N0F D; 2AJE A; 4IW1 A; 1J7E A; 3SQJ A; 1H9Z A; 3A75 A; 3KIK A; 5GIN A; 2OT3 A; 2Z8K A; 4L9Q A; 1MA9 A; 1J78 A; 4OTU A; 3V09 A; 2BXI A; 2DBW A; 3LU6 A; 3FWB C; 5IIX A; 4OTT A; 2QM6 A; 1AO6 A; 1HK1 A; 3KJL A; 4G04 A; 1E78 A; 1FOU A; 2BXN A; 2XVW A; 2DBU A; 2DYM A; 1VFI A; 4OT2 A; 2XSI A; 2BXC A; 2BXO A; 3FNM A; 4ZC6 A; 4K71 A; 4ZBQ A; 1TF0 A; 2XVV A; 1GNJ A; 2LOQ A; 3V08 A; 1VZS A; 2BXK A; 5IFO A; 2DYO A; 5FUO A; 1HK4 A; 3NVM A; 2EFD A; 4BY9 C; 1HK2 A; 4N3Z A; 2E0X A; 1O9X A; 4MBE C; 1UOR A; 4G01 A; 2EFC A; 2BXF A; 1HK3 A; 3MHH B; 4DHX B; 3VQI A; 2BXQ A; 3M99 C; 3A73 A; 2JUH A; 3WHQ A; 1E7H A; 2ROH A; 4TQ1 A; 3WHR A; 4WA6 B; 3JRY A; 3MHS B; 2XVU A; 4ZBR A; 4OR0 A; 1IJG A; 3B9M A; 4F5T A; 3W1S A; 2KBZ A; 1HK5 A; 3G9K D; 4FK5 B; 4GDL B; 1E7F A; 2VUF A; 5IJE A; 1LNS A; 2BXE A; 1N5U A; 2XW0 A; 3GQX A; 4GDX A; 1BM0 A; 2Z8J A; 1H5W A; 4Z9O A; 2NQO A; 1E7E A; 1LOT A; 5GHK A; 4LUF A; 4GDK B; 4S1Y A; 4F5U A; 4LA0 A; 5GIP A; 2XVQ A; 2BXH A; 5B5T A; 4IW2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
