1AYJA

Determination of the three-dimensional solution structure of raphanus sativus antifungal protein 1 (rs-afp1) by 1h nmr, 20 structures
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
51
structure length
51
Chain Sequence
EKLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Determination of the three-dimensional solution structure of Raphanus sativus antifungal protein 1 by 1H NMR.
pubmed doi rcsb
molecule tags Fungicide
molecule keywords ANTIFUNGAL PROTEIN 1
total genus 17
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1997-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1ayjA00
1SNBA 1VNBA 1JZAA 2N69A 1T0ZA 5CY0A 1BMRA 1ICAA 1NRBA 2YBRC 1ZVEA 4AEIA 2E0HA 1OMYA 1I2VA 2LY5A 1I6FA 1PTXA 1WMTA 2ATBA 2MZ0A 1I2UA 1GPSA 4AB0A 1WT7A 2KPYA 1JKZA 1VNAA 1T7AA 2N2QA 1JZBA 2GL1A 1NPIA 1NE5A 1SN4A 2LR3A 1AHOA 1KV0A 1P00A 2LJ7A 1ZYVA 2B3CA 2KYQA 2YC1C 1ZFUA 1ZVGA 2ASCA 1MR4A 3E7UX 4HHFA 2KBHA 1B7DA 4KYPA 2A7TA 1DQ7A 1LQIA 2LT8A 5KK4A 1AYJA 1BCGA 1PX9A 1LQHA 2I61A 2N66A 1GPTA 3E7RL 2M8BB 4CQKA 2B68A 2KBJA 2YEOA 1PE4A 2LJMA 4AAZA 1JXCA 1SEGA 1SN1A 1C55A 2KJAA 1BK8A 2LKBA 2KBKA 1C56A 2SN3A 2NY9X 2N2RA 2BRZA 1FH3A 1B3CA 1WWNA 1TI5A 1T1TA 2NY8X 4UJ0A 1T7EA 1NH5A 1CHZA 1L4VA 4V1DC 1T7BA 2KGQA 1I6GA 1ZU3A 1P0AA 1BRZA 2KSKA 2LI7A 1LQQA 1OZZA 1ZYWA 3PSMA 2LY6A 1NRAA 1N4NA 2E3FA 2E3GA 1CN2A 4HE7A 1MYNA 1ZUTA 1DJTA
chains in the Genus database with same CATH superfamily
1SNBA 5AQXA 2QWPA 5AQWA 1POIA 3BK3C 3FZLA 1VNBA 2QWMA 3LDQA 1JZAA 2N69A 1UGLA 2QW9A 3AY9A 5AQFA 3C7NA 5AQLA 5BPMA 1T0ZA 2QWRA 5AR0A 5CY0A 3GKUA 1BMRA 1ICAA 1NRBA 2YIOA 4HWIA 2YBRC 5BN9A 1ZVEA 4AEIA 2LN8A 3D2EA 5AQYA 2E0HA 2QXLA 4H5RA 5EXWA 3KP1A 2QWNA 4H5WA 4H5TA 3D2FA 3KC6A 1OMYA 1I2VA 1NGBA 2LY5A 3LDPA 1QQMA 5AQHA 1I6FA 1PTXA 1WMTA 2ATBA 2MZ0A 1I2UA 2BUPA 5EVZA 5AQGA 1GPSA 4AB0A 1WT7A 2KPYA 5AQNA 1JKZA 1VNAA 5AQRA 1T7AA 2N2QA 3KVGA 3L56A 1JZBA 5AQOA 1K8BA 1QQOA 2GL1A 1NPIA 1NE5A 2MN5A 1SN4A 2LR3A 1AHOA 1KV0A 1P00A 2LJ7A 1ATSA 1NGIA 3FZFA 1ZYVA 2B3CA 2KYQA 1YUWA 3KOZA 5AQSA 1KAZA 2YC1C 4UADE 1NGCA 1ZFUA 1ZVGA 2G2KA 3GL1A 2ASCA 1MR4A 3E7UX 4GNIA 2KBHA 1XRSB 1B7DA 4HHFA 4KYPA 4UAFE 2A7TA 1DQ7A 1LQIA 2LT8A 5FPEA 3LDOA 1QQNA 3A8YA 5AQJA 5AQTA 5KK4A 1AYJA 1BCGA 3FZKA 1HPMA 1PX9A 1LQHA 2I61A 2YIPA 1HJOA 2N66A 3R2VA 4H5VA 5AQMA 5F0XA 1KAYA 5F1XA 1GPTA 5EX5A 3E7RL 2M8BB 3FE1A 4CQKA 2B68A 2KBJA 2YEOA 1PE4A 4H5NA 2LJMA 4AAZA 1JXCA 2QWQA 1SEGA 1SN1A 3M3ZA 1C55A 2KJAA 2YILA 1BK8A 2LKBA 1DKGD 3LDNA 2KBKA 3IUCA 1C56A 2SN3A 2V7ZA 5AQVA 2NY9X 5BPLA 2JDQD 2N2RA 3KHWA 5BPNA 2BRZA 5EY4A 2E88A 1FH3A 1B3CA 1WWNA 4FL9A 5AQQA 2QWOA 5FPMA 1TI5A 1T1TA 2NY8X 3HSCA 5AQKA 4UJ0A 5FPDA 3KP0A 1BA1A 1NGAA 3CQXA 1T7EA 1NH5A 3ATUA 3QFPA 1CHZA 3QMLA 3KOWA 4V1DC 1T7BA 1L4VA 2KGQA 3ATVA 4IO8A 3JXUA 3L4IA 3LDLA 5AQIA 1BUPA 3KOXA 1I6GA 1ZU3A 3I33A 1S3XA 3C7NB 3KOYA 1BA0A 3QFUA 3QI7A 1P0AA 5AQZA 3SF4D 1BRZA 2KSKA 2K35A 2QWLA 1NGEA 2LI7A 3FZHA 1LQQA 3CW4A 1OZZA 1ZYWA 3PSMA 2E8AA 5AQUA 2GMOA 3D2EB 2D56A 2LY6A 2KHOA 1NRAA 3L6QA 1ATRA 3FZMA 1KAXA 1HX1A 1NGJA 1N4NA 5BN8A 2E3FA 2E3GA 1CN2A 4HE7A 5FPNA 1MYNA 3D2FB 2VY6A 1ZUTA 1NGGA 5F2RA 1NGHA 1NGDA 2E2FA 4KBOA 4UAEF 4FSVA 1DJTA 5AQPA 1NGFA 2MBKA 3GDQA
chains in the Genus database with same CATH topology
1SNBA 1VNBA 1JZAA 2N69A 1T0ZA 5CY0A 1BMRA 1ICAA 1NRBA 2YBRC 1ZVEA 4AEIA 2E0HA 1OMYA 1I2VA 2LY5A 1I6FA 1PTXA 1WMTA 2ATBA 2MZ0A 1I2UA 1GPSA 4AB0A 1WT7A 2KPYA 1JKZA 1VNAA 1T7AA 2N2QA 1JZBA 2GL1A 1NPIA 1NE5A 1SN4A 2LR3A 1AHOA 1KV0A 1P00A 2LJ7A 1ZYVA 2B3CA 2KYQA 2YC1C 1ZFUA 1ZVGA 2ASCA 1MR4A 3E7UX 4HHFA 2KBHA 1B7DA 4KYPA 2A7TA 1DQ7A 1LQIA 2LT8A 5KK4A 1AYJA 1BCGA 1PX9A 1LQHA 2I61A 2N66A 1GPTA 3E7RL 2M8BB 4CQKA 2B68A 2KBJA 2YEOA 1PE4A 2LJMA 4AAZA 1JXCA 1SEGA 1SN1A 1C55A 2KJAA 1BK8A 2LKBA 2KBKA 1C56A 2SN3A 2NY9X 2N2RA 2BRZA 1FH3A 1B3CA 1WWNA 1TI5A 1T1TA 2NY8X 4UJ0A 1T7EA 1NH5A 1CHZA 1L4VA 4V1DC 1T7BA 2KGQA 1I6GA 1ZU3A 1P0AA 1BRZA 2KSKA 2LI7A 1LQQA 1OZZA 1ZYWA 3PSMA 2LY6A 1NRAA 1N4NA 2E3FA 2E3GA 1CN2A 4HE7A 1MYNA 1ZUTA 1DJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SNB A;  1VNB A;  1JZA A;  2N69 A;  1T0Z A;  5CY0 A;  1BMR A;  1ICA A;  1NRB A;  2YBR C;  1ZVE A;  4AEI A;  2E0H A;  1OMY A;  1I2V A;  2LY5 A;  1I6F A;  1PTX A;  1WMT A;  2ATB A;  2MZ0 A;  1I2U A;  1GPS A;  4AB0 A;  1WT7 A;  2KPY A;  1JKZ A;  1VNA A;  1T7A A;  2N2Q A;  1JZB A;  2GL1 A;  1NPI A;  1NE5 A;  1SN4 A;  2LR3 A;  1AHO A;  1KV0 A;  1P00 A;  2LJ7 A;  1ZYV A;  2B3C A;  2KYQ A;  2YC1 C;  1ZFU A;  1ZVG A;  2ASC A;  1MR4 A;  3E7U X;  4HHF A;  2KBH A;  1B7D A;  4KYP A;  2A7T A;  1DQ7 A;  1LQI A;  2LT8 A;  5KK4 A;  1AYJ A;  1BCG A;  1PX9 A;  1LQH A;  2I61 A;  2N66 A;  1GPT A;  3E7R L;  2M8B B;  4CQK A;  2B68 A;  2KBJ A;  2YEO A;  1PE4 A;  2LJM A;  4AAZ A;  1JXC A;  1SEG A;  1SN1 A;  1C55 A;  2KJA A;  1BK8 A;  2LKB A;  2KBK A;  1C56 A;  2SN3 A;  2NY9 X;  2N2R A;  2BRZ A;  1FH3 A;  1B3C A;  1WWN A;  1TI5 A;  1T1T A;  2NY8 X;  4UJ0 A;  1T7E A;  1NH5 A;  1CHZ A;  1L4V A;  4V1D C;  1T7B A;  2KGQ A;  1I6G A;  1ZU3 A;  1P0A A;  1BRZ A;  2KSK A;  2LI7 A;  1LQQ A;  1OZZ A;  1ZYW A;  3PSM A;  2LY6 A;  1NRA A;  1N4N A;  2E3F A;  2E3G A;  1CN2 A;  4HE7 A;  1MYN A;  1ZUT A;  1DJT A; 
#chains in the Genus database with same CATH topology
 1SNB A;  5AQX A;  2QWP A;  5AQW A;  1POI A;  3BK3 C;  3FZL A;  1VNB A;  2QWM A;  3LDQ A;  1JZA A;  2N69 A;  1UGL A;  2QW9 A;  3AY9 A;  5AQF A;  3C7N A;  5AQL A;  5BPM A;  1T0Z A;  2QWR A;  5AR0 A;  5CY0 A;  3GKU A;  1BMR A;  1ICA A;  1NRB A;  2YIO A;  4HWI A;  2YBR C;  5BN9 A;  1ZVE A;  4AEI A;  2LN8 A;  3D2E A;  5AQY A;  2E0H A;  2QXL A;  4H5R A;  5EXW A;  3KP1 A;  2QWN A;  4H5W A;  4H5T A;  3D2F A;  3KC6 A;  1OMY A;  1I2V A;  1NGB A;  2LY5 A;  3LDP A;  1QQM A;  5AQH A;  1I6F A;  1PTX A;  1WMT A;  2ATB A;  2MZ0 A;  1I2U A;  2BUP A;  5EVZ A;  5AQG A;  1GPS A;  4AB0 A;  1WT7 A;  2KPY A;  5AQN A;  1JKZ A;  1VNA A;  5AQR A;  1T7A A;  2N2Q A;  3KVG A;  3L56 A;  1JZB A;  5AQO A;  1K8B A;  1QQO A;  2GL1 A;  1NPI A;  1NE5 A;  2MN5 A;  1SN4 A;  2LR3 A;  1AHO A;  1KV0 A;  1P00 A;  2LJ7 A;  1ATS A;  1NGI A;  3FZF A;  1ZYV A;  2B3C A;  2KYQ A;  1YUW A;  3KOZ A;  5AQS A;  1KAZ A;  2YC1 C;  4UAD E;  1NGC A;  1ZFU A;  1ZVG A;  2G2K A;  3GL1 A;  2ASC A;  1MR4 A;  3E7U X;  4GNI A;  2KBH A;  1XRS B;  1B7D A;  4HHF A;  4KYP A;  4UAF E;  2A7T A;  1DQ7 A;  1LQI A;  2LT8 A;  5FPE A;  3LDO A;  1QQN A;  3A8Y A;  5AQJ A;  5AQT A;  5KK4 A;  1AYJ A;  1BCG A;  3FZK A;  1HPM A;  1PX9 A;  1LQH A;  2I61 A;  2YIP A;  1HJO A;  2N66 A;  3R2V A;  4H5V A;  5AQM A;  5F0X A;  1KAY A;  5F1X A;  1GPT A;  5EX5 A;  3E7R L;  2M8B B;  3FE1 A;  4CQK A;  2B68 A;  2KBJ A;  2YEO A;  1PE4 A;  4H5N A;  2LJM A;  4AAZ A;  1JXC A;  2QWQ A;  1SEG A;  1SN1 A;  3M3Z A;  1C55 A;  2KJA A;  2YIL A;  1BK8 A;  2LKB A;  1DKG D;  3LDN A;  2KBK A;  3IUC A;  1C56 A;  2SN3 A;  2V7Z A;  5AQV A;  2NY9 X;  5BPL A;  2JDQ D;  2N2R A;  3KHW A;  5BPN A;  2BRZ A;  5EY4 A;  2E88 A;  1FH3 A;  1B3C A;  1WWN A;  4FL9 A;  5AQQ A;  2QWO A;  5FPM A;  1TI5 A;  1T1T A;  2NY8 X;  3HSC A;  5AQK A;  4UJ0 A;  5FPD A;  3KP0 A;  1BA1 A;  1NGA A;  3CQX A;  1T7E A;  1NH5 A;  3ATU A;  3QFP A;  1CHZ A;  3QML A;  3KOW A;  4V1D C;  1T7B A;  1L4V A;  2KGQ A;  3ATV A;  4IO8 A;  3JXU A;  3L4I A;  3LDL A;  5AQI A;  1BUP A;  3KOX A;  1I6G A;  1ZU3 A;  3I33 A;  1S3X A;  3C7N B;  3KOY A;  1BA0 A;  3QFU A;  3QI7 A;  1P0A A;  5AQZ A;  3SF4 D;  1BRZ A;  2KSK A;  2K35 A;  2QWL A;  1NGE A;  2LI7 A;  3FZH A;  1LQQ A;  3CW4 A;  1OZZ A;  1ZYW A;  3PSM A;  2E8A A;  5AQU A;  2GMO A;  3D2E B;  2D56 A;  2LY6 A;  2KHO A;  1NRA A;  3L6Q A;  1ATR A;  3FZM A;  1KAX A;  1HX1 A;  1NGJ A;  1N4N A;  5BN8 A;  2E3F A;  2E3G A;  1CN2 A;  4HE7 A;  5FPN A;  1MYN A;  3D2F B;  2VY6 A;  1ZUT A;  1NGG A;  5F2R A;  1NGH A;  1NGD A;  2E2F A;  4KBO A;  4UAE F;  4FSV A;  1DJT A;  5AQP A;  1NGF A;  2MBK A;  3GDQ A; 
#chains in the Genus database with same CATH homology
 1SNB A;  1VNB A;  1JZA A;  2N69 A;  1T0Z A;  5CY0 A;  1BMR A;  1ICA A;  1NRB A;  2YBR C;  1ZVE A;  4AEI A;  2E0H A;  1OMY A;  1I2V A;  2LY5 A;  1I6F A;  1PTX A;  1WMT A;  2ATB A;  2MZ0 A;  1I2U A;  1GPS A;  4AB0 A;  1WT7 A;  2KPY A;  1JKZ A;  1VNA A;  1T7A A;  2N2Q A;  1JZB A;  2GL1 A;  1NPI A;  1NE5 A;  1SN4 A;  2LR3 A;  1AHO A;  1KV0 A;  1P00 A;  2LJ7 A;  1ZYV A;  2B3C A;  2KYQ A;  2YC1 C;  1ZFU A;  1ZVG A;  2ASC A;  1MR4 A;  3E7U X;  4HHF A;  2KBH A;  1B7D A;  4KYP A;  2A7T A;  1DQ7 A;  1LQI A;  2LT8 A;  5KK4 A;  1AYJ A;  1BCG A;  1PX9 A;  1LQH A;  2I61 A;  2N66 A;  1GPT A;  3E7R L;  2M8B B;  4CQK A;  2B68 A;  2KBJ A;  2YEO A;  1PE4 A;  2LJM A;  4AAZ A;  1JXC A;  1SEG A;  1SN1 A;  1C55 A;  2KJA A;  1BK8 A;  2LKB A;  2KBK A;  1C56 A;  2SN3 A;  2NY9 X;  2N2R A;  2BRZ A;  1FH3 A;  1B3C A;  1WWN A;  1TI5 A;  1T1T A;  2NY8 X;  4UJ0 A;  1T7E A;  1NH5 A;  1CHZ A;  1L4V A;  4V1D C;  1T7B A;  2KGQ A;  1I6G A;  1ZU3 A;  1P0A A;  1BRZ A;  2KSK A;  2LI7 A;  1LQQ A;  1OZZ A;  1ZYW A;  3PSM A;  2LY6 A;  1NRA A;  1N4N A;  2E3F A;  2E3G A;  1CN2 A;  4HE7 A;  1MYN A;  1ZUT A;  1DJT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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