2MZ0A

Solution nmr structure of pdfl2.1 from arabidopsis thaliana
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
55
structure length
55
Chain Sequence
b'KDIDGRKPLLIGTCIEFPTEKCNKTCIESNFAGGKCVHIGQSLDFVCVCFPKYYI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR Structure of PDFL2.1 from Arabidopsis thaliana
rcsb
molecule keywords Defensin-like protein 32
source organism Arabidopsis thaliana
molecule tags Antimicrobial protein
total genus 8
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2015-02-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2mz0A00
2BRZA 4V1DC 1SEGA 1DQ7A 4AEIA 3E7RL 1LQHA 4AB0A 2B68A 2LKBA 1OZZA 1T7AA 2MZ0A 2YEOA 2E0HA 1ZYVA 2N2QA 1MYNA 1BRZA 1ICAA 1AHOA 1TI5A 1C56A 2NY9X 2N69A 2KBHA 2LT8A 1JKZA 1ZFUA 2E3FA 2A7TA 2ATBA 1T0ZA 1FH3A 1NH5A 1JZAA 1LQQA 1MR4A 2LJMA 2N2RA 2KBKA 2NY8X 1PX9A 1T7BA 2KBJA 1DJTA 4CQKA 1WMTA 1I2VA 1PTXA 2KPYA 1WT7A 1ZUTA 2LY5A 1L4VA 2YBRC 2LY6A 2ASCA 1VNBA 1B7DA 5KK4A 2N66A 1ZU3A 3PSMA 1BCGA 4KYPA 1I6GA 1PE4A 1CHZA 1ZVGA 2KJAA 1SNBA 3E7UX 1T7EA 4UJ0A 2KYQA 4HE7A 5CY0A 1I2UA 1OMYA 2M8BB 2LJ7A 4AAZA 1AYJA 2I61A 1SN1A 1ZVEA 2LR3A 4HHFA 2YC1C 2E3GA 1NPIA 2KSKA 1C55A 2GL1A 1I6FA 1NRAA 1GPSA 1B3CA 1JXCA 1GPTA 2B3CA 1NE5A 2SN3A 1SN4A 1ZYWA 2LI7A 1BK8A 1BMRA 2KGQA 1CN2A 1T1TA 1VNAA 1N4NA 1KV0A 1P00A 1P0AA 1JZBA 1WWNA 1NRBA 1LQIA
chains in the Genus database with same CATH superfamily
3ATUA 2BRZA 3FZFA 4V1DC 5F0XA 3CQXA 3GDQA 3A8YA 1SEGA 5AQFA 3LDNA 1DQ7A 5BPNA 1NGFA 4AEIA 5FPDA 3E7RL 1LQHA 3I33A 3BK3C 5AQQA 1BA1A 3KP0A 3FZKA 5AQVA 2B68A 2BUPA 1OZZA 1T7AA 2LKBA 2MZ0A 2E0HA 2LN8A 2YEOA 5AQWA 1ZYVA 2N2QA 1MYNA 1BRZA 1BA0A 3D2EB 5AQKA 3GKUA 1NGJA 1ICAA 1AHOA 1TI5A 3KOZA 5AQSA 2GMOA 5BN9A 1C56A 2NY9X 5EX5A 3L4IA 5AQOA 2YIPA 2N69A 3QI7A 2KBHA 2LT8A 2KHOA 1JKZA 1ZFUA 4H5TA 5AQNA 5AQRA 2E3FA 5BPLA 2A7TA 2JDQD 3KVGA 3IUCA 2ATBA 1NGGA 4UADE 4GNIA 1HJOA 3FZMA 1NGDA 1T0ZA 2YILA 3HSCA 2QWQA 3SF4D 1FH3A 1S3XA 3JXUA 1KAYA 1NH5A 1JZAA 1LQQA 3ATVA 1MR4A 5EVZA 1POIA 1BUPA 5AQTA 2LJMA 2N2RA 5AQZA 2KBKA 2NY8X 4IO8A 1PX9A 4KBOA 1T7BA 2KBJA 4FSVA 1DJTA 4CQKA 1NGBA 1WMTA 3LDOA 3QMLA 1I2VA 3KP1A 1YUWA 1PTXA 3KOWA 2KPYA 2VY6A 1WT7A 1ZUTA 2YIOA 2E2FA 5AQJA 3M3ZA 4H5RA 2LY5A 5AQIA 5AR0A 4HWIA 2QWOA 1L4VA 3KHWA 1NGEA 1DKGD 2E88A 5EY4A 5AQXA 1NGCA 2YBRC 2LY6A 1KAZA 2ASCA 5AQYA 3LDQA 5FPMA 1VNBA 1B7DA 3AY9A 2QWNA 5KK4A 1NGAA 3KOYA 2QWLA 2N66A 2QWPA 3KOXA 3LDLA 3R2VA 1ZU3A 3PSMA 1BCGA 2QXLA 5FPNA 4KYPA 1I6GA 1PE4A 1CHZA 2E8AA 4UAEF 1ZVGA 2KJAA 3KC6A 1SNBA 3E7UX 1ATSA 3D2EA 1T7EA 3C7NB 3FZLA 3GL1A 4UJ0A 2KYQA 3QFUA 4HE7A 5AQGA 3L56A 5CY0A 1I2UA 1QQMA 1KAXA 3LDPA 1OMYA 2M8BB 1ATRA 2LJ7A 3D2FB 5AQMA 5AQHA 4AAZA 1AYJA 1UGLA 2I61A 4UAFE 1NGIA 1SN1A 5EXWA 2MBKA 2K35A 2QWRA 1NGHA 1ZVEA 2LR3A 4HHFA 2YC1C 5AQUA 2E3GA 3CW4A 1QQNA 1NPIA 1QQOA 2KSKA 3L6QA 4H5WA 5AQPA 1C55A 4H5NA 4FL9A 2GL1A 3FZHA 1I6FA 1NRAA 1GPSA 2QWMA 1B3CA 1JXCA 1GPTA 2B3CA 4AB0A 3FE1A 5BPMA 1K8BA 1NE5A 3C7NA 5AQLA 2SN3A 1SN4A 1ZYWA 2LI7A 1HPMA 1BK8A 1BMRA 2KGQA 5F2RA 5FPEA 1CN2A 2V7ZA 4H5VA 1T1TA 3D2FA 1VNAA 1HX1A 1N4NA 2QW9A 1KV0A 1P00A 1P0AA 1JZBA 1WWNA 1NRBA 1XRSB 2MN5A 5BN8A 5F1XA 2D56A 2G2KA 1LQIA 3QFPA
chains in the Genus database with same CATH topology
2BRZA 4V1DC 1SEGA 1DQ7A 4AEIA 3E7RL 1LQHA 4AB0A 2B68A 2LKBA 1OZZA 1T7AA 2MZ0A 2YEOA 2E0HA 1ZYVA 2N2QA 1MYNA 1BRZA 1ICAA 1AHOA 1TI5A 1C56A 2NY9X 2N69A 2KBHA 2LT8A 1JKZA 1ZFUA 2E3FA 2A7TA 2ATBA 1T0ZA 1FH3A 1NH5A 1JZAA 1LQQA 1MR4A 2LJMA 2N2RA 2KBKA 2NY8X 1PX9A 1T7BA 2KBJA 1DJTA 4CQKA 1WMTA 1I2VA 1PTXA 2KPYA 1WT7A 1ZUTA 2LY5A 1L4VA 2YBRC 2LY6A 2ASCA 1VNBA 1B7DA 5KK4A 2N66A 1ZU3A 3PSMA 1BCGA 4KYPA 1I6GA 1PE4A 1CHZA 1ZVGA 2KJAA 1SNBA 3E7UX 1T7EA 4UJ0A 2KYQA 4HE7A 5CY0A 1I2UA 1OMYA 2M8BB 2LJ7A 4AAZA 1AYJA 2I61A 1SN1A 1ZVEA 2LR3A 4HHFA 2YC1C 2E3GA 1NPIA 2KSKA 1C55A 2GL1A 1I6FA 1NRAA 1GPSA 1B3CA 1JXCA 1GPTA 2B3CA 1NE5A 2SN3A 1SN4A 1ZYWA 2LI7A 1BK8A 1BMRA 2KGQA 1CN2A 1T1TA 1VNAA 1N4NA 1KV0A 1P00A 1P0AA 1JZBA 1WWNA 1NRBA 1LQIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BRZ A;  4V1D C;  1SEG A;  1DQ7 A;  4AEI A;  3E7R L;  1LQH A;  4AB0 A;  2B68 A;  2LKB A;  1OZZ A;  1T7A A;  2MZ0 A;  2YEO A;  2E0H A;  1ZYV A;  2N2Q A;  1MYN A;  1BRZ A;  1ICA A;  1AHO A;  1TI5 A;  1C56 A;  2NY9 X;  2N69 A;  2KBH A;  2LT8 A;  1JKZ A;  1ZFU A;  2E3F A;  2A7T A;  2ATB A;  1T0Z A;  1FH3 A;  1NH5 A;  1JZA A;  1LQQ A;  1MR4 A;  2LJM A;  2N2R A;  2KBK A;  2NY8 X;  1PX9 A;  1T7B A;  2KBJ A;  1DJT A;  4CQK A;  1WMT A;  1I2V A;  1PTX A;  2KPY A;  1WT7 A;  1ZUT A;  2LY5 A;  1L4V A;  2YBR C;  2LY6 A;  2ASC A;  1VNB A;  1B7D A;  5KK4 A;  2N66 A;  1ZU3 A;  3PSM A;  1BCG A;  4KYP A;  1I6G A;  1PE4 A;  1CHZ A;  1ZVG A;  2KJA A;  1SNB A;  3E7U X;  1T7E A;  4UJ0 A;  2KYQ A;  4HE7 A;  5CY0 A;  1I2U A;  1OMY A;  2M8B B;  2LJ7 A;  4AAZ A;  1AYJ A;  2I61 A;  1SN1 A;  1ZVE A;  2LR3 A;  4HHF A;  2YC1 C;  2E3G A;  1NPI A;  2KSK A;  1C55 A;  2GL1 A;  1I6F A;  1NRA A;  1GPS A;  1B3C A;  1JXC A;  1GPT A;  2B3C A;  1NE5 A;  2SN3 A;  1SN4 A;  1ZYW A;  2LI7 A;  1BK8 A;  1BMR A;  2KGQ A;  1CN2 A;  1T1T A;  1VNA A;  1N4N A;  1KV0 A;  1P00 A;  1P0A A;  1JZB A;  1WWN A;  1NRB A;  1LQI A; 
#chains in the Genus database with same CATH topology
 3ATU A;  2BRZ A;  3FZF A;  4V1D C;  5F0X A;  3CQX A;  3GDQ A;  3A8Y A;  1SEG A;  5AQF A;  3LDN A;  1DQ7 A;  5BPN A;  1NGF A;  4AEI A;  5FPD A;  3E7R L;  1LQH A;  3I33 A;  3BK3 C;  5AQQ A;  1BA1 A;  3KP0 A;  3FZK A;  5AQV A;  2B68 A;  2BUP A;  1OZZ A;  1T7A A;  2LKB A;  2MZ0 A;  2E0H A;  2LN8 A;  2YEO A;  5AQW A;  1ZYV A;  2N2Q A;  1MYN A;  1BRZ A;  1BA0 A;  3D2E B;  5AQK A;  3GKU A;  1NGJ A;  1ICA A;  1AHO A;  1TI5 A;  3KOZ A;  5AQS A;  2GMO A;  5BN9 A;  1C56 A;  2NY9 X;  5EX5 A;  3L4I A;  5AQO A;  2YIP A;  2N69 A;  3QI7 A;  2KBH A;  2LT8 A;  2KHO A;  1JKZ A;  1ZFU A;  4H5T A;  5AQN A;  5AQR A;  2E3F A;  5BPL A;  2A7T A;  2JDQ D;  3KVG A;  3IUC A;  2ATB A;  1NGG A;  4UAD E;  4GNI A;  1HJO A;  3FZM A;  1NGD A;  1T0Z A;  2YIL A;  3HSC A;  2QWQ A;  3SF4 D;  1FH3 A;  1S3X A;  3JXU A;  1KAY A;  1NH5 A;  1JZA A;  1LQQ A;  3ATV A;  1MR4 A;  5EVZ A;  1POI A;  1BUP A;  5AQT A;  2LJM A;  2N2R A;  5AQZ A;  2KBK A;  2NY8 X;  4IO8 A;  1PX9 A;  4KBO A;  1T7B A;  2KBJ A;  4FSV A;  1DJT A;  4CQK A;  1NGB A;  1WMT A;  3LDO A;  3QML A;  1I2V A;  3KP1 A;  1YUW A;  1PTX A;  3KOW A;  2KPY A;  2VY6 A;  1WT7 A;  1ZUT A;  2YIO A;  2E2F A;  5AQJ A;  3M3Z A;  4H5R A;  2LY5 A;  5AQI A;  5AR0 A;  4HWI A;  2QWO A;  1L4V A;  3KHW A;  1NGE A;  1DKG D;  2E88 A;  5EY4 A;  5AQX A;  1NGC A;  2YBR C;  2LY6 A;  1KAZ A;  2ASC A;  5AQY A;  3LDQ A;  5FPM A;  1VNB A;  1B7D A;  3AY9 A;  2QWN A;  5KK4 A;  1NGA A;  3KOY A;  2QWL A;  2N66 A;  2QWP A;  3KOX A;  3LDL A;  3R2V A;  1ZU3 A;  3PSM A;  1BCG A;  2QXL A;  5FPN A;  4KYP A;  1I6G A;  1PE4 A;  1CHZ A;  2E8A A;  4UAE F;  1ZVG A;  2KJA A;  3KC6 A;  1SNB A;  3E7U X;  1ATS A;  3D2E A;  1T7E A;  3C7N B;  3FZL A;  3GL1 A;  4UJ0 A;  2KYQ A;  3QFU A;  4HE7 A;  5AQG A;  3L56 A;  5CY0 A;  1I2U A;  1QQM A;  1KAX A;  3LDP A;  1OMY A;  2M8B B;  1ATR A;  2LJ7 A;  3D2F B;  5AQM A;  5AQH A;  4AAZ A;  1AYJ A;  1UGL A;  2I61 A;  4UAF E;  1NGI A;  1SN1 A;  5EXW A;  2MBK A;  2K35 A;  2QWR A;  1NGH A;  1ZVE A;  2LR3 A;  4HHF A;  2YC1 C;  5AQU A;  2E3G A;  3CW4 A;  1QQN A;  1NPI A;  1QQO A;  2KSK A;  3L6Q A;  4H5W A;  5AQP A;  1C55 A;  4H5N A;  4FL9 A;  2GL1 A;  3FZH A;  1I6F A;  1NRA A;  1GPS A;  2QWM A;  1B3C A;  1JXC A;  1GPT A;  2B3C A;  4AB0 A;  3FE1 A;  5BPM A;  1K8B A;  1NE5 A;  3C7N A;  5AQL A;  2SN3 A;  1SN4 A;  1ZYW A;  2LI7 A;  1HPM A;  1BK8 A;  1BMR A;  2KGQ A;  5F2R A;  5FPE A;  1CN2 A;  2V7Z A;  4H5V A;  1T1T A;  3D2F A;  1VNA A;  1HX1 A;  1N4N A;  2QW9 A;  1KV0 A;  1P00 A;  1P0A A;  1JZB A;  1WWN A;  1NRB A;  1XRS B;  2MN5 A;  5BN8 A;  5F1X A;  2D56 A;  2G2K A;  1LQI A;  3QFP A; 
#chains in the Genus database with same CATH homology
 2BRZ A;  4V1D C;  1SEG A;  1DQ7 A;  4AEI A;  3E7R L;  1LQH A;  4AB0 A;  2B68 A;  2LKB A;  1OZZ A;  1T7A A;  2MZ0 A;  2YEO A;  2E0H A;  1ZYV A;  2N2Q A;  1MYN A;  1BRZ A;  1ICA A;  1AHO A;  1TI5 A;  1C56 A;  2NY9 X;  2N69 A;  2KBH A;  2LT8 A;  1JKZ A;  1ZFU A;  2E3F A;  2A7T A;  2ATB A;  1T0Z A;  1FH3 A;  1NH5 A;  1JZA A;  1LQQ A;  1MR4 A;  2LJM A;  2N2R A;  2KBK A;  2NY8 X;  1PX9 A;  1T7B A;  2KBJ A;  1DJT A;  4CQK A;  1WMT A;  1I2V A;  1PTX A;  2KPY A;  1WT7 A;  1ZUT A;  2LY5 A;  1L4V A;  2YBR C;  2LY6 A;  2ASC A;  1VNB A;  1B7D A;  5KK4 A;  2N66 A;  1ZU3 A;  3PSM A;  1BCG A;  4KYP A;  1I6G A;  1PE4 A;  1CHZ A;  1ZVG A;  2KJA A;  1SNB A;  3E7U X;  1T7E A;  4UJ0 A;  2KYQ A;  4HE7 A;  5CY0 A;  1I2U A;  1OMY A;  2M8B B;  2LJ7 A;  4AAZ A;  1AYJ A;  2I61 A;  1SN1 A;  1ZVE A;  2LR3 A;  4HHF A;  2YC1 C;  2E3G A;  1NPI A;  2KSK A;  1C55 A;  2GL1 A;  1I6F A;  1NRA A;  1GPS A;  1B3C A;  1JXC A;  1GPT A;  2B3C A;  1NE5 A;  2SN3 A;  1SN4 A;  1ZYW A;  2LI7 A;  1BK8 A;  1BMR A;  2KGQ A;  1CN2 A;  1T1T A;  1VNA A;  1N4N A;  1KV0 A;  1P00 A;  1P0A A;  1JZB A;  1WWN A;  1NRB A;  1LQI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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