2MZ0A

Solution nmr structure of pdfl2.1 from arabidopsis thaliana
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
55
structure length
55
Chain Sequence
KDIDGRKPLLIGTCIEFPTEKCNKTCIESNFAGGKCVHIGQSLDFVCVCFPKYYI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
source organism Arabidopsis thaliana
publication title Solution NMR Structure of PDFL2.1 from Arabidopsis thaliana
rcsb
molecule keywords Defensin-like protein 32
total genus 8
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2015-02-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2mz0A00
1NRBA 2E3FA 1T1TA 1I6GA 2E0HA 2YC1C 2GL1A 2LR3A 1B7DA 2LT8A 1BK8A 1NE5A 1FH3A 2N2QA 1SN1A 1OMYA 2A7TA 4AEIA 1NRAA 1CN2A 4CQKA 1ZYWA 1BCGA 1JZAA 1WMTA 1C56A 1LQIA 3PSMA 3E7UX 2KGQA 2LI7A 3E7RL 1OZZA 1JXCA 2KBJA 1MR4A 1MYNA 2N2RA 1JZBA 1NH5A 2KPYA 2N66A 1GPSA 2ASCA 1I2UA 1ZVGA 1PX9A 1WT7A 1NPIA 2KJAA 1T7BA 1P00A 1WWNA 2N69A 1VNAA 2KBHA 4V1DC 2SN3A 1BMRA 1PE4A 1ZVEA 4AB0A 1C55A 1T7EA 2LY6A 2E3GA 1ZUTA 1CHZA 1ZYVA 1ZU3A 4HE7A 1TI5A 5KK4A 2KYQA 4KYPA 1AHOA 1DJTA 1ZFUA 1B3CA 1T0ZA 2B3CA 1DQ7A 1N4NA 1SEGA 2LJMA 1LQQA 2B68A 1SNBA 1I6FA 2I61A 2LJ7A 2NY9X 2YEOA 4AAZA 1PTXA 1BRZA 2KSKA 1JKZA 1KV0A 1T7AA 2YBRC 1LQHA 1SN4A 2KBKA 1L4VA 2ATBA 1ICAA 4UJ0A 1P0AA 2MZ0A 5CY0A 4HHFA 2LKBA 1VNBA 2NY8X 1AYJA 2LY5A 1I2VA 2M8BB 2BRZA 1GPTA
chains in the Genus database with same CATH superfamily
1NRBA 2E3FA 1QQOA 4KBOA 3C7NA 1KAXA 5AQRA 5FPDA 1NGJA 1T1TA 3CW4A 1NGDA 3FZFA 2QWNA 2VY6A 5BN9A 1I6GA 2E0HA 3D2EB 2YC1C 2GL1A 2LR3A 1B7DA 2QWMA 2LT8A 1BK8A 2QWOA 1NE5A 1NGCA 5BPLA 2N2QA 1FH3A 1SN1A 4GNIA 1OMYA 2A7TA 4AEIA 5BN8A 1NGEA 3FZLA 1NRAA 1CN2A 1KAZA 2QWLA 4H5TA 4UAEF 3LDNA 1NGGA 4CQKA 1ZYWA 1BCGA 1JZAA 3GDQA 2QWPA 1WMTA 1C56A 5AQJA 5FPNA 1LQIA 1BUPA 3PSMA 3E7UX 5AQWA 2QW9A 2KGQA 2LI7A 3C7NB 3E7RL 3FZHA 3LDPA 1OZZA 5EXWA 1JXCA 2KBJA 1MR4A 2E88A 1MYNA 2N2RA 1JZBA 1NH5A 2GMOA 2KPYA 2N66A 3KP1A 1K8BA 1NGIA 1ATRA 4H5RA 5AQIA 5AQGA 1GPSA 3KOYA 1BA1A 1YUWA 1DKGD 2ASCA 3GKUA 3KOXA 1ZVGA 1PX9A 1NGAA 1I2UA 1WT7A 1NPIA 2KJAA 2YIOA 5AQHA 1T7BA 5AQSA 3SF4D 4FL9A 3LDQA 5AQXA 1P00A 1QQMA 3BK3C 4H5VA 2K35A 5AQNA 1WWNA 2YILA 5AQVA 2N69A 3KVGA 1VNAA 2KBHA 2G2KA 4V1DC 2SN3A 1BMRA 1PE4A 2MBKA 1ATSA 5AQLA 5F1XA 1ZVEA 3M3ZA 2QXLA 3FZKA 4AB0A 5AQTA 3KOWA 3FZMA 1NGBA 3L4IA 5AQYA 5F0XA 1C55A 3LDOA 1T7EA 3I33A 2LY6A 2E3GA 3HSCA 1ZUTA 2E8AA 1CHZA 2BUPA 4H5NA 5AQOA 1ZYVA 3GL1A 1ZU3A 3KC6A 4HE7A 1XRSB 1S3XA 1TI5A 3QI7A 5BPMA 2V7ZA 5KK4A 2KYQA 5EY4A 1POIA 3R2VA 4KYPA 5AQFA 3IUCA 1AHOA 1DJTA 1ZFUA 1B3CA 2YIPA 1T0ZA 2B3CA 1DQ7A 1GPTA 2QWQA 3QFPA 1KAYA 2D56A 1N4NA 1SEGA 2LJMA 1HPMA 2LN8A 2MN5A 3CQXA 1LQQA 1HX1A 2B68A 1SNBA 1I6FA 4FSVA 2I61A 2LJ7A 2NY9X 2YEOA 3ATVA 3D2FA 1PTXA 5AR0A 2KSKA 1BA0A 3LDLA 1BRZA 3KHWA 5F2RA 1JKZA 1KV0A 1T7AA 3L6QA 2YBRC 1HJOA 1QQNA 1LQHA 5AQUA 3D2EA 3QFUA 1NGHA 1SN4A 1UGLA 3KP0A 2KBKA 3JXUA 2ATBA 3L56A 3QMLA 4UADE 1ICAA 1L4VA 5EVZA 3AY9A 4AAZA 4UJ0A 1P0AA 2MZ0A 5AQZA 5CY0A 5AQPA 4HHFA 2LKBA 5AQKA 5FPMA 5BPNA 5FPEA 2QWRA 5EX5A 1VNBA 3ATUA 2NY8X 4UAFE 1AYJA 2JDQD 2E2FA 2KHOA 4HWIA 2LY5A 1I2VA 2M8BB 3KOZA 3FE1A 4IO8A 5AQQA 4H5WA 2BRZA 3A8YA 3D2FB 5AQMA 1NGFA
chains in the Genus database with same CATH topology
1NRBA 2E3FA 1T1TA 1I6GA 2E0HA 2YC1C 2GL1A 2LR3A 1B7DA 2LT8A 1BK8A 1NE5A 1FH3A 2N2QA 1SN1A 1OMYA 2A7TA 4AEIA 1NRAA 1CN2A 4CQKA 1ZYWA 1BCGA 1JZAA 1WMTA 1C56A 1LQIA 3PSMA 3E7UX 2KGQA 2LI7A 3E7RL 1OZZA 1JXCA 2KBJA 1MR4A 1MYNA 2N2RA 1JZBA 1NH5A 2KPYA 2N66A 1GPSA 2ASCA 1I2UA 1ZVGA 1PX9A 1WT7A 1NPIA 2KJAA 1T7BA 1P00A 1WWNA 2N69A 1VNAA 2KBHA 4V1DC 2SN3A 1BMRA 1PE4A 1ZVEA 4AB0A 1C55A 1T7EA 2LY6A 2E3GA 1ZUTA 1CHZA 1ZYVA 1ZU3A 4HE7A 1TI5A 5KK4A 2KYQA 4KYPA 1AHOA 1DJTA 1ZFUA 1B3CA 1T0ZA 2B3CA 1DQ7A 1N4NA 1SEGA 2LJMA 1LQQA 2B68A 1SNBA 1I6FA 2I61A 2LJ7A 2NY9X 2YEOA 4AAZA 1PTXA 1BRZA 2KSKA 1JKZA 1KV0A 1T7AA 2YBRC 1LQHA 1SN4A 2KBKA 1L4VA 2ATBA 1ICAA 4UJ0A 1P0AA 2MZ0A 5CY0A 4HHFA 2LKBA 1VNBA 2NY8X 1AYJA 2LY5A 1I2VA 2M8BB 2BRZA 1GPTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NRB A;  2E3F A;  1T1T A;  1I6G A;  2E0H A;  2YC1 C;  2GL1 A;  2LR3 A;  1B7D A;  2LT8 A;  1BK8 A;  1NE5 A;  1FH3 A;  2N2Q A;  1SN1 A;  1OMY A;  2A7T A;  4AEI A;  1NRA A;  1CN2 A;  4CQK A;  1ZYW A;  1BCG A;  1JZA A;  1WMT A;  1C56 A;  1LQI A;  3PSM A;  3E7U X;  2KGQ A;  2LI7 A;  3E7R L;  1OZZ A;  1JXC A;  2KBJ A;  1MR4 A;  1MYN A;  2N2R A;  1JZB A;  1NH5 A;  2KPY A;  2N66 A;  1GPS A;  2ASC A;  1I2U A;  1ZVG A;  1PX9 A;  1WT7 A;  1NPI A;  2KJA A;  1T7B A;  1P00 A;  1WWN A;  2N69 A;  1VNA A;  2KBH A;  4V1D C;  2SN3 A;  1BMR A;  1PE4 A;  1ZVE A;  4AB0 A;  1C55 A;  1T7E A;  2LY6 A;  2E3G A;  1ZUT A;  1CHZ A;  1ZYV A;  1ZU3 A;  4HE7 A;  1TI5 A;  5KK4 A;  2KYQ A;  4KYP A;  1AHO A;  1DJT A;  1ZFU A;  1B3C A;  1T0Z A;  2B3C A;  1DQ7 A;  1N4N A;  1SEG A;  2LJM A;  1LQQ A;  2B68 A;  1SNB A;  1I6F A;  2I61 A;  2LJ7 A;  2NY9 X;  2YEO A;  4AAZ A;  1PTX A;  1BRZ A;  2KSK A;  1JKZ A;  1KV0 A;  1T7A A;  2YBR C;  1LQH A;  1SN4 A;  2KBK A;  1L4V A;  2ATB A;  1ICA A;  4UJ0 A;  1P0A A;  2MZ0 A;  5CY0 A;  4HHF A;  2LKB A;  1VNB A;  2NY8 X;  1AYJ A;  2LY5 A;  1I2V A;  2M8B B;  2BRZ A;  1GPT A; 
#chains in the Genus database with same CATH topology
 1NRB A;  2E3F A;  1QQO A;  4KBO A;  3C7N A;  1KAX A;  5AQR A;  5FPD A;  1NGJ A;  1T1T A;  3CW4 A;  1NGD A;  3FZF A;  2QWN A;  2VY6 A;  5BN9 A;  1I6G A;  2E0H A;  3D2E B;  2YC1 C;  2GL1 A;  2LR3 A;  1B7D A;  2QWM A;  2LT8 A;  1BK8 A;  2QWO A;  1NE5 A;  1NGC A;  5BPL A;  2N2Q A;  1FH3 A;  1SN1 A;  4GNI A;  1OMY A;  2A7T A;  4AEI A;  5BN8 A;  1NGE A;  3FZL A;  1NRA A;  1CN2 A;  1KAZ A;  2QWL A;  4H5T A;  4UAE F;  3LDN A;  1NGG A;  4CQK A;  1ZYW A;  1BCG A;  1JZA A;  3GDQ A;  2QWP A;  1WMT A;  1C56 A;  5AQJ A;  5FPN A;  1LQI A;  1BUP A;  3PSM A;  3E7U X;  5AQW A;  2QW9 A;  2KGQ A;  2LI7 A;  3C7N B;  3E7R L;  3FZH A;  3LDP A;  1OZZ A;  5EXW A;  1JXC A;  2KBJ A;  1MR4 A;  2E88 A;  1MYN A;  2N2R A;  1JZB A;  1NH5 A;  2GMO A;  2KPY A;  2N66 A;  3KP1 A;  1K8B A;  1NGI A;  1ATR A;  4H5R A;  5AQI A;  5AQG A;  1GPS A;  3KOY A;  1BA1 A;  1YUW A;  1DKG D;  2ASC A;  3GKU A;  3KOX A;  1ZVG A;  1PX9 A;  1NGA A;  1I2U A;  1WT7 A;  1NPI A;  2KJA A;  2YIO A;  5AQH A;  1T7B A;  5AQS A;  3SF4 D;  4FL9 A;  3LDQ A;  5AQX A;  1P00 A;  1QQM A;  3BK3 C;  4H5V A;  2K35 A;  5AQN A;  1WWN A;  2YIL A;  5AQV A;  2N69 A;  3KVG A;  1VNA A;  2KBH A;  2G2K A;  4V1D C;  2SN3 A;  1BMR A;  1PE4 A;  2MBK A;  1ATS A;  5AQL A;  5F1X A;  1ZVE A;  3M3Z A;  2QXL A;  3FZK A;  4AB0 A;  5AQT A;  3KOW A;  3FZM A;  1NGB A;  3L4I A;  5AQY A;  5F0X A;  1C55 A;  3LDO A;  1T7E A;  3I33 A;  2LY6 A;  2E3G A;  3HSC A;  1ZUT A;  2E8A A;  1CHZ A;  2BUP A;  4H5N A;  5AQO A;  1ZYV A;  3GL1 A;  1ZU3 A;  3KC6 A;  4HE7 A;  1XRS B;  1S3X A;  1TI5 A;  3QI7 A;  5BPM A;  2V7Z A;  5KK4 A;  2KYQ A;  5EY4 A;  1POI A;  3R2V A;  4KYP A;  5AQF A;  3IUC A;  1AHO A;  1DJT A;  1ZFU A;  1B3C A;  2YIP A;  1T0Z A;  2B3C A;  1DQ7 A;  1GPT A;  2QWQ A;  3QFP A;  1KAY A;  2D56 A;  1N4N A;  1SEG A;  2LJM A;  1HPM A;  2LN8 A;  2MN5 A;  3CQX A;  1LQQ A;  1HX1 A;  2B68 A;  1SNB A;  1I6F A;  4FSV A;  2I61 A;  2LJ7 A;  2NY9 X;  2YEO A;  3ATV A;  3D2F A;  1PTX A;  5AR0 A;  2KSK A;  1BA0 A;  3LDL A;  1BRZ A;  3KHW A;  5F2R A;  1JKZ A;  1KV0 A;  1T7A A;  3L6Q A;  2YBR C;  1HJO A;  1QQN A;  1LQH A;  5AQU A;  3D2E A;  3QFU A;  1NGH A;  1SN4 A;  1UGL A;  3KP0 A;  2KBK A;  3JXU A;  2ATB A;  3L56 A;  3QML A;  4UAD E;  1ICA A;  1L4V A;  5EVZ A;  3AY9 A;  4AAZ A;  4UJ0 A;  1P0A A;  2MZ0 A;  5AQZ A;  5CY0 A;  5AQP A;  4HHF A;  2LKB A;  5AQK A;  5FPM A;  5BPN A;  5FPE A;  2QWR A;  5EX5 A;  1VNB A;  3ATU A;  2NY8 X;  4UAF E;  1AYJ A;  2JDQ D;  2E2F A;  2KHO A;  4HWI A;  2LY5 A;  1I2V A;  2M8B B;  3KOZ A;  3FE1 A;  4IO8 A;  5AQQ A;  4H5W A;  2BRZ A;  3A8Y A;  3D2F B;  5AQM A;  1NGF A; 
#chains in the Genus database with same CATH homology
 1NRB A;  2E3F A;  1T1T A;  1I6G A;  2E0H A;  2YC1 C;  2GL1 A;  2LR3 A;  1B7D A;  2LT8 A;  1BK8 A;  1NE5 A;  1FH3 A;  2N2Q A;  1SN1 A;  1OMY A;  2A7T A;  4AEI A;  1NRA A;  1CN2 A;  4CQK A;  1ZYW A;  1BCG A;  1JZA A;  1WMT A;  1C56 A;  1LQI A;  3PSM A;  3E7U X;  2KGQ A;  2LI7 A;  3E7R L;  1OZZ A;  1JXC A;  2KBJ A;  1MR4 A;  1MYN A;  2N2R A;  1JZB A;  1NH5 A;  2KPY A;  2N66 A;  1GPS A;  2ASC A;  1I2U A;  1ZVG A;  1PX9 A;  1WT7 A;  1NPI A;  2KJA A;  1T7B A;  1P00 A;  1WWN A;  2N69 A;  1VNA A;  2KBH A;  4V1D C;  2SN3 A;  1BMR A;  1PE4 A;  1ZVE A;  4AB0 A;  1C55 A;  1T7E A;  2LY6 A;  2E3G A;  1ZUT A;  1CHZ A;  1ZYV A;  1ZU3 A;  4HE7 A;  1TI5 A;  5KK4 A;  2KYQ A;  4KYP A;  1AHO A;  1DJT A;  1ZFU A;  1B3C A;  1T0Z A;  2B3C A;  1DQ7 A;  1N4N A;  1SEG A;  2LJM A;  1LQQ A;  2B68 A;  1SNB A;  1I6F A;  2I61 A;  2LJ7 A;  2NY9 X;  2YEO A;  4AAZ A;  1PTX A;  1BRZ A;  2KSK A;  1JKZ A;  1KV0 A;  1T7A A;  2YBR C;  1LQH A;  1SN4 A;  2KBK A;  1L4V A;  2ATB A;  1ICA A;  4UJ0 A;  1P0A A;  2MZ0 A;  5CY0 A;  4HHF A;  2LKB A;  1VNB A;  2NY8 X;  1AYJ A;  2LY5 A;  1I2V A;  2M8B B;  2BRZ A;  1GPT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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