4AB0A

X-ray crystal structure of nicotiana alata defensin nad1
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
46
structure length
46
Chain Sequence
ECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
molecule tags Antimicrobial protein
total genus 11
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4ab0A00
1PE4A 2KBKA 5KK4A 1ZFUA 4KYPA 1JZBA 1N4NA 2E3GA 1ICAA 1DQ7A 1ZYVA 4AEIA 1T7AA 2E3FA 2LT8A 2M8BB 4AAZA 1AHOA 2KJAA 1OMYA 4HE7A 2ATBA 1WT7A 1ZVGA 1T1TA 1C55A 1NE5A 2KPYA 1PX9A 1AYJA 1P0AA 2LI7A 1B7DA 2I61A 3PSMA 1GPTA 1NRBA 1BCGA 1I6FA 1PTXA 1JZAA 2B68A 1LQQA 4UJ0A 1SN4A 1KV0A 1MYNA 1ZU3A 1L4VA 2KBJA 2KSKA 2LJ7A 2LJMA 1NH5A 1GPSA 1FH3A 1T7EA 2N2RA 1SEGA 2MZ0A 1LQHA 1NPIA 1ZVEA 1MR4A 1DJTA 2N2QA 4CQKA 2E0HA 1BRZA 2LKBA 1C56A 2SN3A 2YBRC 2ASCA 1P00A 2LY6A 1SN1A 1WWNA 4V1DC 1CN2A 1JXCA 1T0ZA 2YEOA 1BK8A 1LQIA 1I6GA 2NY9X 3E7RL 5CY0A 2KBHA 1I2UA 2A7TA 1ZUTA 2N66A 1SNBA 1ZYWA 1I2VA 1JKZA 4AB0A 2BRZA 3E7UX 2LY5A 1VNBA 2LR3A 1NRAA 2N69A 2B3CA 1OZZA 4HHFA 1TI5A 1T7BA 1WMTA 1VNAA 1CHZA 1BMRA 2NY8X 2GL1A 2YC1C 1B3CA 2KGQA 2KYQA
chains in the Genus database with same CATH superfamily
1PE4A 2E88A 2KBKA 5BPLA 3D2EA 5AQRA 3QFPA 5KK4A 1K8BA 1ZFUA 3HSCA 1JZBA 1N4NA 2E3GA 4KYPA 3FZMA 1ICAA 1DQ7A 1ZYVA 2BUPA 2QXLA 3FZHA 1KAYA 3GKUA 3KVGA 5EY4A 4AEIA 4H5TA 3AY9A 5AQJA 3QFUA 1T7AA 2E3FA 2LT8A 2M8BB 4AAZA 4KBOA 2QWLA 1AHOA 2KJAA 3CW4A 5AR0A 1OMYA 3L6QA 5F0XA 1QQOA 4HE7A 5AQKA 3QI7A 2ATBA 1WT7A 2QWPA 1ZVGA 1T1TA 1C55A 1NE5A 2KPYA 1PX9A 3C7NA 5AQWA 1AYJA 1P0AA 2LI7A 2GMOA 4GNIA 5F1XA 1B7DA 2YIOA 3KOZA 1QQMA 2I61A 3PSMA 5AQMA 5FPEA 3KP0A 1NRBA 1GPTA 1BCGA 2LN8A 1QQNA 2D56A 3D2EB 1I6FA 2YIPA 1BA0A 3D2FA 3IUCA 1PTXA 1JZAA 5BN9A 2YILA 2B68A 3LDNA 5BPNA 1LQQA 4UJ0A 1SN4A 5BPMA 1KV0A 5AQNA 1MYNA 3L56A 5AQTA 1ZU3A 4FL9A 3L4IA 1L4VA 2KBJA 2KSKA 2LJ7A 5AQIA 2LJMA 5AQGA 1NH5A 3R2VA 2QWOA 5F2RA 5EX5A 1FH3A 1GPSA 1T7EA 3M3ZA 3A8YA 2N2RA 3KC6A 1NGFA 1SEGA 3FZFA 3KP1A 2MZ0A 5FPMA 1DKGD 5AQPA 5AQXA 4H5RA 2MN5A 1S3XA 1KAXA 1LQHA 1HX1A 1NPIA 3ATVA 1ZVEA 2QWQA 1MR4A 1DJTA 2JDQD 4HWIA 2N2QA 3GL1A 5AQLA 5AQQA 4CQKA 2E0HA 3LDLA 1BRZA 3KOXA 3QMLA 3BK3C 3ATUA 2LKBA 2QWMA 1C56A 1NGAA 1POIA 3LDPA 2SN3A 2YBRC 1NGEA 1NGDA 2VY6A 2K35A 1BUPA 3FE1A 2ASCA 2V7ZA 1P00A 4IO8A 2LY6A 2MBKA 3FZKA 5FPNA 1SN1A 2QWRA 2G2KA 1KAZA 1WWNA 3LDQA 5EXWA 1NGCA 4V1DC 5BN8A 1CN2A 1ATSA 1JXCA 1NGBA 1T0ZA 2YEOA 1BK8A 1HJOA 5AQSA 1NGIA 1NGGA 2QW9A 1BA1A 1LQIA 3C7NB 4UAFE 5FPDA 5AQHA 1NGJA 2NY9X 3E7RL 4H5VA 4UAEF 5CY0A 1I6GA 2KHOA 1XRSB 2KBHA 1I2UA 2A7TA 2QWNA 1ZUTA 2N66A 5AQUA 1SNBA 1NGHA 1ZYWA 3KOYA 5AQFA 3SF4D 1I2VA 3LDOA 1JKZA 3D2FB 3FZLA 3CQXA 3JXUA 4AB0A 2BRZA 3E7UX 2LY5A 2E2FA 5AQOA 5AQYA 1VNBA 1UGLA 2LR3A 1NRAA 4H5WA 2N69A 2B3CA 3KOWA 1OZZA 1ATRA 4HHFA 1TI5A 1YUWA 1T7BA 3I33A 4H5NA 1WMTA 1HPMA 1CHZA 1VNAA 4UADE 1BMRA 2NY8X 5EVZA 2GL1A 4FSVA 2E8AA 5AQZA 2YC1C 1B3CA 3KHWA 2KGQA 3GDQA 5AQVA 2KYQA
chains in the Genus database with same CATH topology
1PE4A 2KBKA 5KK4A 1ZFUA 4KYPA 1JZBA 1N4NA 2E3GA 1ICAA 1DQ7A 1ZYVA 4AEIA 1T7AA 2E3FA 2LT8A 2M8BB 4AAZA 1AHOA 2KJAA 1OMYA 4HE7A 2ATBA 1WT7A 1ZVGA 1T1TA 1C55A 1NE5A 2KPYA 1PX9A 1AYJA 1P0AA 2LI7A 1B7DA 2I61A 3PSMA 1GPTA 1NRBA 1BCGA 1I6FA 1PTXA 1JZAA 2B68A 1LQQA 4UJ0A 1SN4A 1KV0A 1MYNA 1ZU3A 1L4VA 2KBJA 2KSKA 2LJ7A 2LJMA 1NH5A 1GPSA 1FH3A 1T7EA 2N2RA 1SEGA 2MZ0A 1LQHA 1NPIA 1ZVEA 1MR4A 1DJTA 2N2QA 4CQKA 2E0HA 1BRZA 2LKBA 1C56A 2SN3A 2YBRC 2ASCA 1P00A 2LY6A 1SN1A 1WWNA 4V1DC 1CN2A 1JXCA 1T0ZA 2YEOA 1BK8A 1LQIA 1I6GA 2NY9X 3E7RL 5CY0A 2KBHA 1I2UA 2A7TA 1ZUTA 2N66A 1SNBA 1ZYWA 1I2VA 1JKZA 4AB0A 2BRZA 3E7UX 2LY5A 1VNBA 2LR3A 1NRAA 2N69A 2B3CA 1OZZA 4HHFA 1TI5A 1T7BA 1WMTA 1VNAA 1CHZA 1BMRA 2NY8X 2GL1A 2YC1C 1B3CA 2KGQA 2KYQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PE4 A;  2KBK A;  5KK4 A;  1ZFU A;  4KYP A;  1JZB A;  1N4N A;  2E3G A;  1ICA A;  1DQ7 A;  1ZYV A;  4AEI A;  1T7A A;  2E3F A;  2LT8 A;  2M8B B;  4AAZ A;  1AHO A;  2KJA A;  1OMY A;  4HE7 A;  2ATB A;  1WT7 A;  1ZVG A;  1T1T A;  1C55 A;  1NE5 A;  2KPY A;  1PX9 A;  1AYJ A;  1P0A A;  2LI7 A;  1B7D A;  2I61 A;  3PSM A;  1GPT A;  1NRB A;  1BCG A;  1I6F A;  1PTX A;  1JZA A;  2B68 A;  1LQQ A;  4UJ0 A;  1SN4 A;  1KV0 A;  1MYN A;  1ZU3 A;  1L4V A;  2KBJ A;  2KSK A;  2LJ7 A;  2LJM A;  1NH5 A;  1GPS A;  1FH3 A;  1T7E A;  2N2R A;  1SEG A;  2MZ0 A;  1LQH A;  1NPI A;  1ZVE A;  1MR4 A;  1DJT A;  2N2Q A;  4CQK A;  2E0H A;  1BRZ A;  2LKB A;  1C56 A;  2SN3 A;  2YBR C;  2ASC A;  1P00 A;  2LY6 A;  1SN1 A;  1WWN A;  4V1D C;  1CN2 A;  1JXC A;  1T0Z A;  2YEO A;  1BK8 A;  1LQI A;  1I6G A;  2NY9 X;  3E7R L;  5CY0 A;  2KBH A;  1I2U A;  2A7T A;  1ZUT A;  2N66 A;  1SNB A;  1ZYW A;  1I2V A;  1JKZ A;  4AB0 A;  2BRZ A;  3E7U X;  2LY5 A;  1VNB A;  2LR3 A;  1NRA A;  2N69 A;  2B3C A;  1OZZ A;  4HHF A;  1TI5 A;  1T7B A;  1WMT A;  1VNA A;  1CHZ A;  1BMR A;  2NY8 X;  2GL1 A;  2YC1 C;  1B3C A;  2KGQ A;  2KYQ A; 
#chains in the Genus database with same CATH topology
 1PE4 A;  2E88 A;  2KBK A;  5BPL A;  3D2E A;  5AQR A;  3QFP A;  5KK4 A;  1K8B A;  1ZFU A;  3HSC A;  1JZB A;  1N4N A;  2E3G A;  4KYP A;  3FZM A;  1ICA A;  1DQ7 A;  1ZYV A;  2BUP A;  2QXL A;  3FZH A;  1KAY A;  3GKU A;  3KVG A;  5EY4 A;  4AEI A;  4H5T A;  3AY9 A;  5AQJ A;  3QFU A;  1T7A A;  2E3F A;  2LT8 A;  2M8B B;  4AAZ A;  4KBO A;  2QWL A;  1AHO A;  2KJA A;  3CW4 A;  5AR0 A;  1OMY A;  3L6Q A;  5F0X A;  1QQO A;  4HE7 A;  5AQK A;  3QI7 A;  2ATB A;  1WT7 A;  2QWP A;  1ZVG A;  1T1T A;  1C55 A;  1NE5 A;  2KPY A;  1PX9 A;  3C7N A;  5AQW A;  1AYJ A;  1P0A A;  2LI7 A;  2GMO A;  4GNI A;  5F1X A;  1B7D A;  2YIO A;  3KOZ A;  1QQM A;  2I61 A;  3PSM A;  5AQM A;  5FPE A;  3KP0 A;  1NRB A;  1GPT A;  1BCG A;  2LN8 A;  1QQN A;  2D56 A;  3D2E B;  1I6F A;  2YIP A;  1BA0 A;  3D2F A;  3IUC A;  1PTX A;  1JZA A;  5BN9 A;  2YIL A;  2B68 A;  3LDN A;  5BPN A;  1LQQ A;  4UJ0 A;  1SN4 A;  5BPM A;  1KV0 A;  5AQN A;  1MYN A;  3L56 A;  5AQT A;  1ZU3 A;  4FL9 A;  3L4I A;  1L4V A;  2KBJ A;  2KSK A;  2LJ7 A;  5AQI A;  2LJM A;  5AQG A;  1NH5 A;  3R2V A;  2QWO A;  5F2R A;  5EX5 A;  1FH3 A;  1GPS A;  1T7E A;  3M3Z A;  3A8Y A;  2N2R A;  3KC6 A;  1NGF A;  1SEG A;  3FZF A;  3KP1 A;  2MZ0 A;  5FPM A;  1DKG D;  5AQP A;  5AQX A;  4H5R A;  2MN5 A;  1S3X A;  1KAX A;  1LQH A;  1HX1 A;  1NPI A;  3ATV A;  1ZVE A;  2QWQ A;  1MR4 A;  1DJT A;  2JDQ D;  4HWI A;  2N2Q A;  3GL1 A;  5AQL A;  5AQQ A;  4CQK A;  2E0H A;  3LDL A;  1BRZ A;  3KOX A;  3QML A;  3BK3 C;  3ATU A;  2LKB A;  2QWM A;  1C56 A;  1NGA A;  1POI A;  3LDP A;  2SN3 A;  2YBR C;  1NGE A;  1NGD A;  2VY6 A;  2K35 A;  1BUP A;  3FE1 A;  2ASC A;  2V7Z A;  1P00 A;  4IO8 A;  2LY6 A;  2MBK A;  3FZK A;  5FPN A;  1SN1 A;  2QWR A;  2G2K A;  1KAZ A;  1WWN A;  3LDQ A;  5EXW A;  1NGC A;  4V1D C;  5BN8 A;  1CN2 A;  1ATS A;  1JXC A;  1NGB A;  1T0Z A;  2YEO A;  1BK8 A;  1HJO A;  5AQS A;  1NGI A;  1NGG A;  2QW9 A;  1BA1 A;  1LQI A;  3C7N B;  4UAF E;  5FPD A;  5AQH A;  1NGJ A;  2NY9 X;  3E7R L;  4H5V A;  4UAE F;  5CY0 A;  1I6G A;  2KHO A;  1XRS B;  2KBH A;  1I2U A;  2A7T A;  2QWN A;  1ZUT A;  2N66 A;  5AQU A;  1SNB A;  1NGH A;  1ZYW A;  3KOY A;  5AQF A;  3SF4 D;  1I2V A;  3LDO A;  1JKZ A;  3D2F B;  3FZL A;  3CQX A;  3JXU A;  4AB0 A;  2BRZ A;  3E7U X;  2LY5 A;  2E2F A;  5AQO A;  5AQY A;  1VNB A;  1UGL A;  2LR3 A;  1NRA A;  4H5W A;  2N69 A;  2B3C A;  3KOW A;  1OZZ A;  1ATR A;  4HHF A;  1TI5 A;  1YUW A;  1T7B A;  3I33 A;  4H5N A;  1WMT A;  1HPM A;  1CHZ A;  1VNA A;  4UAD E;  1BMR A;  2NY8 X;  5EVZ A;  2GL1 A;  4FSV A;  2E8A A;  5AQZ A;  2YC1 C;  1B3C A;  3KHW A;  2KGQ A;  3GDQ A;  5AQV A;  2KYQ A; 
#chains in the Genus database with same CATH homology
 1PE4 A;  2KBK A;  5KK4 A;  1ZFU A;  4KYP A;  1JZB A;  1N4N A;  2E3G A;  1ICA A;  1DQ7 A;  1ZYV A;  4AEI A;  1T7A A;  2E3F A;  2LT8 A;  2M8B B;  4AAZ A;  1AHO A;  2KJA A;  1OMY A;  4HE7 A;  2ATB A;  1WT7 A;  1ZVG A;  1T1T A;  1C55 A;  1NE5 A;  2KPY A;  1PX9 A;  1AYJ A;  1P0A A;  2LI7 A;  1B7D A;  2I61 A;  3PSM A;  1GPT A;  1NRB A;  1BCG A;  1I6F A;  1PTX A;  1JZA A;  2B68 A;  1LQQ A;  4UJ0 A;  1SN4 A;  1KV0 A;  1MYN A;  1ZU3 A;  1L4V A;  2KBJ A;  2KSK A;  2LJ7 A;  2LJM A;  1NH5 A;  1GPS A;  1FH3 A;  1T7E A;  2N2R A;  1SEG A;  2MZ0 A;  1LQH A;  1NPI A;  1ZVE A;  1MR4 A;  1DJT A;  2N2Q A;  4CQK A;  2E0H A;  1BRZ A;  2LKB A;  1C56 A;  2SN3 A;  2YBR C;  2ASC A;  1P00 A;  2LY6 A;  1SN1 A;  1WWN A;  4V1D C;  1CN2 A;  1JXC A;  1T0Z A;  2YEO A;  1BK8 A;  1LQI A;  1I6G A;  2NY9 X;  3E7R L;  5CY0 A;  2KBH A;  1I2U A;  2A7T A;  1ZUT A;  2N66 A;  1SNB A;  1ZYW A;  1I2V A;  1JKZ A;  4AB0 A;  2BRZ A;  3E7U X;  2LY5 A;  1VNB A;  2LR3 A;  1NRA A;  2N69 A;  2B3C A;  1OZZ A;  4HHF A;  1TI5 A;  1T7B A;  1WMT A;  1VNA A;  1CHZ A;  1BMR A;  2NY8 X;  2GL1 A;  2YC1 C;  1B3C A;  2KGQ A;  2KYQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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