4AB0A

X-ray crystal structure of nicotiana alata defensin nad1
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
46
structure length
46
Chain Sequence
ECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
total genus 11
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4ab0A00
1BCGA 1BK8A 1TI5A 1WT7A 1I6FA 1NH5A 1I6GA 1ZFUA 1GPSA 1DQ7A 1SNBA 5CY0A 2KYQA 1VNAA 2I61A 2KSKA 2KBJA 2A7TA 1ZU3A 1C55A 1CHZA 2ATBA 1BRZA 2N2RA 2N2QA 1JZAA 2LY5A 1CN2A 2LY6A 1JXCA 2BRZA 1ZVGA 4KYPA 1NPIA 1T7BA 1PE4A 1N4NA 1T1TA 2KBHA 4AB0A 1PTXA 1ZYVA 4HE7A 4UJ0A 1OZZA 2N66A 4HHFA 1AYJA 1SN4A 1NRBA 1B3CA 2MZ0A 1LQHA 1LQIA 1WMTA 2LKBA 2B3CA 1ZVEA 2SN3A 2LI7A 2NY8X 2LT8A 1MYNA 2KJAA 2M8BB 1P0AA 4AEIA 3PSMA 1KV0A 2KPYA 1GPTA 1B7DA 1L4VA 1JZBA 1PX9A 1NRAA 1AHOA 4AAZA 2NY9X 1T7EA 1BMRA 2GL1A 3E7UX 1I2VA 2YC1C 1WWNA 1LQQA 2B68A 1P00A 2N69A 1FH3A 2KBKA 1DJTA 2E3FA 1OMYA 3E7RL 2LJ7A 5KK4A 1NE5A 2ASCA 1JKZA 1ICAA 1I2UA 1SN1A 1SEGA 4V1DC 1T7AA 1T0ZA 2LR3A 2LJMA 1C56A 1ZUTA 2YEOA 1VNBA 2E0HA 2KGQA 1MR4A 4CQKA 1ZYWA 2YBRC 2E3GA
chains in the Genus database with same CATH superfamily
3CQXA 1BCGA 5AQMA 1BK8A 1TI5A 1WT7A 2E88A 1I6FA 1NH5A 1C55A 3SF4D 5AQUA 3AY9A 5F2RA 3A8YA 5BN9A 1I6GA 3C7NB 3QFUA 1ZFUA 2GMOA 1DQ7A 3ATVA 1GPSA 1YUWA 1SNBA 5AQJA 2LN8A 3GL1A 5CY0A 1HPMA 1NGEA 3GDQA 2KYQA 3LDQA 5AQTA 1VNAA 2I61A 2KSKA 2KBJA 3ATUA 2A7TA 1ZU3A 1POIA 1CHZA 1NGFA 1S3XA 2ATBA 2D56A 3LDNA 5AQKA 1BRZA 5AQGA 3KHWA 2N2RA 4H5RA 5AQWA 2N2QA 3C7NA 1JZAA 2LY5A 1CN2A 2LY6A 1JXCA 3FZHA 2BRZA 1ZVGA 4KYPA 5AQOA 1NPIA 1T7BA 3JXUA 3KVGA 5EXWA 1PE4A 1N4NA 3BK3C 2BUPA 3M3ZA 1T1TA 1UGLA 2KBHA 4AB0A 3KOXA 3LDOA 2QWQA 1PTXA 1ZYVA 2KHOA 4HE7A 1OZZA 4UJ0A 2N66A 4HHFA 3CW4A 4HWIA 1KAYA 1SN4A 5AQSA 1AYJA 1NRBA 3D2EB 4UADE 3FE1A 3L6QA 2QWPA 1B3CA 1NGHA 2MZ0A 1LQHA 2YIPA 3GKUA 5AQZA 1LQIA 1WMTA 2LKBA 2B3CA 3I33A 5AQHA 5BN8A 2QWOA 1QQMA 1ZVEA 5AQIA 5FPDA 5EY4A 2MBKA 2SN3A 4UAEF 5AQRA 2LI7A 2NY8X 3KP1A 2QWMA 2LT8A 1MYNA 3IUCA 4H5NA 3KOZA 1BA0A 2E2FA 2KJAA 2M8BB 1P0AA 1ATSA 1NGCA 4AEIA 1BUPA 1NGBA 1NGDA 3L56A 3PSMA 5EVZA 1KV0A 2KPYA 1GPTA 1B7DA 5AQQA 2QW9A 1L4VA 2QWLA 4FL9A 1JZBA 2QWRA 1PX9A 1NRAA 3R2VA 5BPNA 1AHOA 4AAZA 5AQPA 4UAFE 2YILA 2NY9X 3D2FB 1T7EA 1KAZA 1BMRA 4H5VA 3FZKA 5AQNA 3KOWA 1NGGA 3LDPA 2GL1A 3E7UX 1I2VA 2YC1C 3KP0A 3LDLA 1WWNA 1LQQA 2B68A 4KBOA 1P00A 2N69A 3D2EA 3FZLA 4H5WA 5BPMA 4GNIA 2KBKA 3L4IA 3QFPA 1K8BA 1HX1A 3QI7A 2QWNA 1XRSB 5AQVA 1DJTA 3D2FA 5AQLA 5AQXA 3FZFA 2E3FA 5AR0A 3QMLA 5EX5A 1OMYA 3E7RL 2LJ7A 2G2KA 5AQFA 5AQYA 3KOYA 2V7ZA 5F1XA 5KK4A 2MN5A 1NE5A 2ASCA 1JKZA 1ICAA 5BPLA 2VY6A 1QQNA 1I2UA 1HJOA 3FZMA 1BA1A 1NGAA 2QXLA 1KAXA 3KC6A 5FPEA 2K35A 1NGJA 1SN1A 5FPMA 2E8AA 1SEGA 4V1DC 1T7AA 1ATRA 1T0ZA 3HSCA 4H5TA 2JDQD 2LR3A 5FPNA 1FH3A 2LJMA 1C56A 1ZUTA 2YEOA 1QQOA 2YIOA 1VNBA 2E0HA 2KGQA 1MR4A 4IO8A 4CQKA 1DKGD 5F0XA 1NGIA 1ZYWA 2YBRC 2E3GA 4FSVA
chains in the Genus database with same CATH topology
1BCGA 1BK8A 1TI5A 1WT7A 1I6FA 1NH5A 1I6GA 1ZFUA 1GPSA 1DQ7A 1SNBA 5CY0A 2KYQA 1VNAA 2I61A 2KSKA 2KBJA 2A7TA 1ZU3A 1C55A 1CHZA 2ATBA 1BRZA 2N2RA 2N2QA 1JZAA 2LY5A 1CN2A 2LY6A 1JXCA 2BRZA 1ZVGA 4KYPA 1NPIA 1T7BA 1PE4A 1N4NA 1T1TA 2KBHA 4AB0A 1PTXA 1ZYVA 4HE7A 4UJ0A 1OZZA 2N66A 4HHFA 1AYJA 1SN4A 1NRBA 1B3CA 2MZ0A 1LQHA 1LQIA 1WMTA 2LKBA 2B3CA 1ZVEA 2SN3A 2LI7A 2NY8X 2LT8A 1MYNA 2KJAA 2M8BB 1P0AA 4AEIA 3PSMA 1KV0A 2KPYA 1GPTA 1B7DA 1L4VA 1JZBA 1PX9A 1NRAA 1AHOA 4AAZA 2NY9X 1T7EA 1BMRA 2GL1A 3E7UX 1I2VA 2YC1C 1WWNA 1LQQA 2B68A 1P00A 2N69A 1FH3A 2KBKA 1DJTA 2E3FA 1OMYA 3E7RL 2LJ7A 5KK4A 1NE5A 2ASCA 1JKZA 1ICAA 1I2UA 1SN1A 1SEGA 4V1DC 1T7AA 1T0ZA 2LR3A 2LJMA 1C56A 1ZUTA 2YEOA 1VNBA 2E0HA 2KGQA 1MR4A 4CQKA 1ZYWA 2YBRC 2E3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BCG A;  1BK8 A;  1TI5 A;  1WT7 A;  1I6F A;  1NH5 A;  1I6G A;  1ZFU A;  1GPS A;  1DQ7 A;  1SNB A;  5CY0 A;  2KYQ A;  1VNA A;  2I61 A;  2KSK A;  2KBJ A;  2A7T A;  1ZU3 A;  1C55 A;  1CHZ A;  2ATB A;  1BRZ A;  2N2R A;  2N2Q A;  1JZA A;  2LY5 A;  1CN2 A;  2LY6 A;  1JXC A;  2BRZ A;  1ZVG A;  4KYP A;  1NPI A;  1T7B A;  1PE4 A;  1N4N A;  1T1T A;  2KBH A;  4AB0 A;  1PTX A;  1ZYV A;  4HE7 A;  4UJ0 A;  1OZZ A;  2N66 A;  4HHF A;  1AYJ A;  1SN4 A;  1NRB A;  1B3C A;  2MZ0 A;  1LQH A;  1LQI A;  1WMT A;  2LKB A;  2B3C A;  1ZVE A;  2SN3 A;  2LI7 A;  2NY8 X;  2LT8 A;  1MYN A;  2KJA A;  2M8B B;  1P0A A;  4AEI A;  3PSM A;  1KV0 A;  2KPY A;  1GPT A;  1B7D A;  1L4V A;  1JZB A;  1PX9 A;  1NRA A;  1AHO A;  4AAZ A;  2NY9 X;  1T7E A;  1BMR A;  2GL1 A;  3E7U X;  1I2V A;  2YC1 C;  1WWN A;  1LQQ A;  2B68 A;  1P00 A;  2N69 A;  1FH3 A;  2KBK A;  1DJT A;  2E3F A;  1OMY A;  3E7R L;  2LJ7 A;  5KK4 A;  1NE5 A;  2ASC A;  1JKZ A;  1ICA A;  1I2U A;  1SN1 A;  1SEG A;  4V1D C;  1T7A A;  1T0Z A;  2LR3 A;  2LJM A;  1C56 A;  1ZUT A;  2YEO A;  1VNB A;  2E0H A;  2KGQ A;  1MR4 A;  4CQK A;  1ZYW A;  2YBR C;  2E3G A; 
#chains in the Genus database with same CATH topology
 3CQX A;  1BCG A;  5AQM A;  1BK8 A;  1TI5 A;  1WT7 A;  2E88 A;  1I6F A;  1NH5 A;  1C55 A;  3SF4 D;  5AQU A;  3AY9 A;  5F2R A;  3A8Y A;  5BN9 A;  1I6G A;  3C7N B;  3QFU A;  1ZFU A;  2GMO A;  1DQ7 A;  3ATV A;  1GPS A;  1YUW A;  1SNB A;  5AQJ A;  2LN8 A;  3GL1 A;  5CY0 A;  1HPM A;  1NGE A;  3GDQ A;  2KYQ A;  3LDQ A;  5AQT A;  1VNA A;  2I61 A;  2KSK A;  2KBJ A;  3ATU A;  2A7T A;  1ZU3 A;  1POI A;  1CHZ A;  1NGF A;  1S3X A;  2ATB A;  2D56 A;  3LDN A;  5AQK A;  1BRZ A;  5AQG A;  3KHW A;  2N2R A;  4H5R A;  5AQW A;  2N2Q A;  3C7N A;  1JZA A;  2LY5 A;  1CN2 A;  2LY6 A;  1JXC A;  3FZH A;  2BRZ A;  1ZVG A;  4KYP A;  5AQO A;  1NPI A;  1T7B A;  3JXU A;  3KVG A;  5EXW A;  1PE4 A;  1N4N A;  3BK3 C;  2BUP A;  3M3Z A;  1T1T A;  1UGL A;  2KBH A;  4AB0 A;  3KOX A;  3LDO A;  2QWQ A;  1PTX A;  1ZYV A;  2KHO A;  4HE7 A;  1OZZ A;  4UJ0 A;  2N66 A;  4HHF A;  3CW4 A;  4HWI A;  1KAY A;  1SN4 A;  5AQS A;  1AYJ A;  1NRB A;  3D2E B;  4UAD E;  3FE1 A;  3L6Q A;  2QWP A;  1B3C A;  1NGH A;  2MZ0 A;  1LQH A;  2YIP A;  3GKU A;  5AQZ A;  1LQI A;  1WMT A;  2LKB A;  2B3C A;  3I33 A;  5AQH A;  5BN8 A;  2QWO A;  1QQM A;  1ZVE A;  5AQI A;  5FPD A;  5EY4 A;  2MBK A;  2SN3 A;  4UAE F;  5AQR A;  2LI7 A;  2NY8 X;  3KP1 A;  2QWM A;  2LT8 A;  1MYN A;  3IUC A;  4H5N A;  3KOZ A;  1BA0 A;  2E2F A;  2KJA A;  2M8B B;  1P0A A;  1ATS A;  1NGC A;  4AEI A;  1BUP A;  1NGB A;  1NGD A;  3L56 A;  3PSM A;  5EVZ A;  1KV0 A;  2KPY A;  1GPT A;  1B7D A;  5AQQ A;  2QW9 A;  1L4V A;  2QWL A;  4FL9 A;  1JZB A;  2QWR A;  1PX9 A;  1NRA A;  3R2V A;  5BPN A;  1AHO A;  4AAZ A;  5AQP A;  4UAF E;  2YIL A;  2NY9 X;  3D2F B;  1T7E A;  1KAZ A;  1BMR A;  4H5V A;  3FZK A;  5AQN A;  3KOW A;  1NGG A;  3LDP A;  2GL1 A;  3E7U X;  1I2V A;  2YC1 C;  3KP0 A;  3LDL A;  1WWN A;  1LQQ A;  2B68 A;  4KBO A;  1P00 A;  2N69 A;  3D2E A;  3FZL A;  4H5W A;  5BPM A;  4GNI A;  2KBK A;  3L4I A;  3QFP A;  1K8B A;  1HX1 A;  3QI7 A;  2QWN A;  1XRS B;  5AQV A;  1DJT A;  3D2F A;  5AQL A;  5AQX A;  3FZF A;  2E3F A;  5AR0 A;  3QML A;  5EX5 A;  1OMY A;  3E7R L;  2LJ7 A;  2G2K A;  5AQF A;  5AQY A;  3KOY A;  2V7Z A;  5F1X A;  5KK4 A;  2MN5 A;  1NE5 A;  2ASC A;  1JKZ A;  1ICA A;  5BPL A;  2VY6 A;  1QQN A;  1I2U A;  1HJO A;  3FZM A;  1BA1 A;  1NGA A;  2QXL A;  1KAX A;  3KC6 A;  5FPE A;  2K35 A;  1NGJ A;  1SN1 A;  5FPM A;  2E8A A;  1SEG A;  4V1D C;  1T7A A;  1ATR A;  1T0Z A;  3HSC A;  4H5T A;  2JDQ D;  2LR3 A;  5FPN A;  1FH3 A;  2LJM A;  1C56 A;  1ZUT A;  2YEO A;  1QQO A;  2YIO A;  1VNB A;  2E0H A;  2KGQ A;  1MR4 A;  4IO8 A;  4CQK A;  1DKG D;  5F0X A;  1NGI A;  1ZYW A;  2YBR C;  2E3G A;  4FSV A; 
#chains in the Genus database with same CATH homology
 1BCG A;  1BK8 A;  1TI5 A;  1WT7 A;  1I6F A;  1NH5 A;  1I6G A;  1ZFU A;  1GPS A;  1DQ7 A;  1SNB A;  5CY0 A;  2KYQ A;  1VNA A;  2I61 A;  2KSK A;  2KBJ A;  2A7T A;  1ZU3 A;  1C55 A;  1CHZ A;  2ATB A;  1BRZ A;  2N2R A;  2N2Q A;  1JZA A;  2LY5 A;  1CN2 A;  2LY6 A;  1JXC A;  2BRZ A;  1ZVG A;  4KYP A;  1NPI A;  1T7B A;  1PE4 A;  1N4N A;  1T1T A;  2KBH A;  4AB0 A;  1PTX A;  1ZYV A;  4HE7 A;  4UJ0 A;  1OZZ A;  2N66 A;  4HHF A;  1AYJ A;  1SN4 A;  1NRB A;  1B3C A;  2MZ0 A;  1LQH A;  1LQI A;  1WMT A;  2LKB A;  2B3C A;  1ZVE A;  2SN3 A;  2LI7 A;  2NY8 X;  2LT8 A;  1MYN A;  2KJA A;  2M8B B;  1P0A A;  4AEI A;  3PSM A;  1KV0 A;  2KPY A;  1GPT A;  1B7D A;  1L4V A;  1JZB A;  1PX9 A;  1NRA A;  1AHO A;  4AAZ A;  2NY9 X;  1T7E A;  1BMR A;  2GL1 A;  3E7U X;  1I2V A;  2YC1 C;  1WWN A;  1LQQ A;  2B68 A;  1P00 A;  2N69 A;  1FH3 A;  2KBK A;  1DJT A;  2E3F A;  1OMY A;  3E7R L;  2LJ7 A;  5KK4 A;  1NE5 A;  2ASC A;  1JKZ A;  1ICA A;  1I2U A;  1SN1 A;  1SEG A;  4V1D C;  1T7A A;  1T0Z A;  2LR3 A;  2LJM A;  1C56 A;  1ZUT A;  2YEO A;  1VNB A;  2E0H A;  2KGQ A;  1MR4 A;  4CQK A;  1ZYW A;  2YBR C;  2E3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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