2K35A

Hydramacin-1: structure and antibacterial activity of a peptide from the basal metazoan hydra
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
60
structure length
60
Chain Sequence
QIVDCWETWSRCTKWSQGGTGTLWKSCNDRCKELGRKRGQCEEKPSRCPLSKKAWTCICY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords hydramacin-1
publication title Hydramacin-1, structure and antibacterial activity of a protein from the Basal metazoan hydra.
pubmed doi rcsb
source organism Hydra
total genus 21
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2008-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14865 Macin Macin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.100 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2k35A00
2LN8A 2K35A
chains in the Genus database with same CATH superfamily
2LN8A 2NY9X 2LR3A 1BRZA 2LY5A 1I6GA 1BA1A 1OMYA 2QWNA 2YBRC 1CHZA 3KP1A 2E88A 2GMOA 5KK4A 1T1TA 2MZ0A 1T7AA 2E8AA 2YC1C 3A8YA 4H5NA 2BUPA 1QQNA 2LJ7A 5CY0A 1VNAA 1N4NA 1OZZA 1ZFUA 3GKUA 2E2FA 2D56A 1ATRA 1P0AA 3L4IA 3PSMA 3SF4D 1GPTA 5AQTA 2QWRA 1DJTA 1NRBA 4FL9A 2N69A 1P00A 1KAYA 1BCGA 4UAEF 4HHFA 1QQMA 1ICAA 5AQFA 2YEOA 1PX9A 4IO8A 5BPNA 3KOWA 5AQVA 2I61A 2KBJA 3C7NA 1KAXA 2BRZA 1HX1A 1ZUTA 2MBKA 3FZMA 3L6QA 1HJOA 1NGEA 3LDLA 2ATBA 3KHWA 1SN4A 4KBOA 3KVGA 1NH5A 2KHOA 2QXLA 1BMRA 1NPIA 2KBKA 5EY4A 3I33A 2KGQA 2E0HA 1NGCA 4CQKA 3D2FB 3KOXA 3E7RL 3QFUA 3D2EB 3CW4A 1NGHA 2QWOA 3LDOA 2LI7A 1MYNA 4GNIA 1PE4A 5AQXA 4H5WA 3E7UX 4FSVA 1NGAA 2V7ZA 5AQSA 1LQHA 1T0ZA 2A7TA 3D2EA 5AQQA 1I2UA 3FZKA 1ATSA 1JXCA 2B68A 1B3CA 1NGBA 1I2VA 1WWNA 5F2RA 1K8BA 4AB0A 5FPDA 1BUPA 2MN5A 2ASCA 3R2VA 1NGDA 1ZYVA 2QW9A 1GPSA 1T7BA 4HE7A 2GL1A 3FZLA 1YUWA 1WMTA 3KC6A 1BK8A 3FZFA 2KJAA 1TI5A 3KOYA 2LJMA 3FE1A 5AQWA 5BPMA 3HSCA 1SN1A 1HPMA 2KPYA 1QQOA 2KBHA 2YIPA 5AQPA 3LDNA 4KYPA 1NE5A 1KV0A 1LQQA 3LDQA 3LDPA 5AQZA 1C55A 1NRAA 3GDQA 5AQMA 5FPMA 1POIA 3QI7A 2KSKA 1UGLA 1AHOA 2B3CA 1JZAA 3ATVA 5FPEA 1FH3A 1CN2A 4HWIA 5F1XA 1AYJA 4AAZA 2E3FA 5EXWA 2G2KA 3D2FA 2LT8A 3BK3C 3KOZA 1DQ7A 5AQJA 5AQLA 5AQRA 5F0XA 1S3XA 1PTXA 1XRSB 2SN3A 1NGFA 3QFPA 5AQHA 5AQOA 3M3ZA 2QWMA 2JDQD 2KYQA 4AEIA 1VNBA 4UADE 3QMLA 2K35A 3IUCA 1NGIA 2QWLA 4V1DC 4UAFE 5BN8A 4UJ0A 1MR4A 1DKGD 1WT7A 2YIOA 5AQKA 2N66A 5BN9A 3FZHA 1ZVGA 1C56A 2YILA 4H5RA 5BPLA 1SNBA 2N2QA 2QWPA 2QWQA 2M8BB 1JKZA 1ZU3A 1LQIA 1NGGA 3ATUA 2LKBA 1ZVEA 5FPNA 2LY6A 1JZBA 5EX5A 2E3GA 2N2RA 5AQIA 1KAZA 1T7EA 3GL1A 3L56A 4H5TA 3KP0A 4H5VA 3C7NB 5AQNA 1L4VA 1I6FA 1SEGA 3AY9A 5EVZA 3JXUA 5AQUA 1NGJA 1B7DA 5AQGA 5AQYA 5AR0A 2VY6A 1BA0A 3CQXA 1ZYWA 2NY8X
chains in the Genus database with same CATH topology
2LN8A 1BA1A 2QWNA 2E88A 2GMOA 3A8YA 2E8AA 4H5NA 2BUPA 1QQNA 2E2FA 2D56A 1ATRA 3L4IA 3SF4D 5AQTA 2QWRA 4FL9A 1KAYA 4UAEF 1QQMA 5AQFA 4IO8A 5BPNA 5AQVA 3C7NA 1KAXA 1HX1A 2MBKA 3FZMA 3L6QA 1HJOA 1NGEA 3LDLA 3KHWA 4KBOA 3KVGA 2KHOA 2QXLA 5EY4A 3I33A 1NGCA 3D2FB 3QFUA 3D2EB 3CW4A 1NGHA 2QWOA 3LDOA 4GNIA 5AQXA 4H5WA 4FSVA 1NGAA 2V7ZA 5AQSA 3D2EA 5AQQA 3FZKA 1ATSA 1NGBA 5F2RA 5FPDA 2MN5A 1BUPA 3R2VA 2QW9A 1NGDA 3FZLA 3KC6A 1YUWA 3FZFA 3FE1A 5AQWA 5BPMA 3HSCA 1HPMA 1QQOA 2YIPA 5AQPA 3LDNA 5AQZA 3LDPA 3LDQA 3GDQA 5AQMA 5FPMA 1POIA 3QI7A 3ATVA 5FPEA 4HWIA 5F1XA 5EXWA 3D2FA 3BK3C 5AQLA 5AQJA 5F0XA 5AQRA 1S3XA 5AQOA 1NGFA 3QFPA 5AQHA 3M3ZA 2QWMA 2JDQD 4UADE 3QMLA 2K35A 3IUCA 1NGIA 2QWLA 5BN8A 4UAFE 1DKGD 2YIOA 5AQKA 5BN9A 3FZHA 4H5RA 5BPLA 2YILA 2QWPA 2QWQA 1NGGA 5FPNA 3ATUA 5EX5A 5AQIA 1KAZA 3GL1A 3L56A 4H5TA 4H5VA 3C7NB 5AQNA 3AY9A 5EVZA 3JXUA 5AQUA 1NGJA 5AQGA 5AQYA 5AR0A 2VY6A 1BA0A 3CQXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LN8 A;  2K35 A; 
#chains in the Genus database with same CATH topology
 2LN8 A;  2NY9 X;  2LR3 A;  1BRZ A;  2LY5 A;  1I6G A;  1BA1 A;  1OMY A;  2QWN A;  2YBR C;  1CHZ A;  3KP1 A;  2E88 A;  2GMO A;  5KK4 A;  1T1T A;  2MZ0 A;  1T7A A;  2E8A A;  2YC1 C;  3A8Y A;  4H5N A;  2BUP A;  1QQN A;  2LJ7 A;  5CY0 A;  1VNA A;  1N4N A;  1OZZ A;  1ZFU A;  3GKU A;  2E2F A;  2D56 A;  1ATR A;  1P0A A;  3L4I A;  3PSM A;  3SF4 D;  1GPT A;  5AQT A;  2QWR A;  1DJT A;  1NRB A;  4FL9 A;  2N69 A;  1P00 A;  1KAY A;  1BCG A;  4UAE F;  4HHF A;  1QQM A;  1ICA A;  5AQF A;  2YEO A;  1PX9 A;  4IO8 A;  5BPN A;  3KOW A;  5AQV A;  2I61 A;  2KBJ A;  3C7N A;  1KAX A;  2BRZ A;  1HX1 A;  1ZUT A;  2MBK A;  3FZM A;  3L6Q A;  1HJO A;  1NGE A;  3LDL A;  2ATB A;  3KHW A;  1SN4 A;  4KBO A;  3KVG A;  1NH5 A;  2KHO A;  2QXL A;  1BMR A;  1NPI A;  2KBK A;  5EY4 A;  3I33 A;  2KGQ A;  2E0H A;  1NGC A;  4CQK A;  3D2F B;  3KOX A;  3E7R L;  3QFU A;  3D2E B;  3CW4 A;  1NGH A;  2QWO A;  3LDO A;  2LI7 A;  1MYN A;  4GNI A;  1PE4 A;  5AQX A;  4H5W A;  3E7U X;  4FSV A;  1NGA A;  2V7Z A;  5AQS A;  1LQH A;  1T0Z A;  2A7T A;  3D2E A;  5AQQ A;  1I2U A;  3FZK A;  1ATS A;  1JXC A;  2B68 A;  1B3C A;  1NGB A;  1I2V A;  1WWN A;  5F2R A;  1K8B A;  4AB0 A;  5FPD A;  1BUP A;  2MN5 A;  2ASC A;  3R2V A;  1NGD A;  1ZYV A;  2QW9 A;  1GPS A;  1T7B A;  4HE7 A;  2GL1 A;  3FZL A;  1YUW A;  1WMT A;  3KC6 A;  1BK8 A;  3FZF A;  2KJA A;  1TI5 A;  3KOY A;  2LJM A;  3FE1 A;  5AQW A;  5BPM A;  3HSC A;  1SN1 A;  1HPM A;  2KPY A;  1QQO A;  2KBH A;  2YIP A;  5AQP A;  3LDN A;  4KYP A;  1NE5 A;  1KV0 A;  1LQQ A;  3LDQ A;  3LDP A;  5AQZ A;  1C55 A;  1NRA A;  3GDQ A;  5AQM A;  5FPM A;  1POI A;  3QI7 A;  2KSK A;  1UGL A;  1AHO A;  2B3C A;  1JZA A;  3ATV A;  5FPE A;  1FH3 A;  1CN2 A;  4HWI A;  5F1X A;  1AYJ A;  4AAZ A;  2E3F A;  5EXW A;  2G2K A;  3D2F A;  2LT8 A;  3BK3 C;  3KOZ A;  1DQ7 A;  5AQJ A;  5AQL A;  5AQR A;  5F0X A;  1S3X A;  1PTX A;  1XRS B;  2SN3 A;  1NGF A;  3QFP A;  5AQH A;  5AQO A;  3M3Z A;  2QWM A;  2JDQ D;  2KYQ A;  4AEI A;  1VNB A;  4UAD E;  3QML A;  2K35 A;  3IUC A;  1NGI A;  2QWL A;  4V1D C;  4UAF E;  5BN8 A;  4UJ0 A;  1MR4 A;  1DKG D;  1WT7 A;  2YIO A;  5AQK A;  2N66 A;  5BN9 A;  3FZH A;  1ZVG A;  1C56 A;  2YIL A;  4H5R A;  5BPL A;  1SNB A;  2N2Q A;  2QWP A;  2QWQ A;  2M8B B;  1JKZ A;  1ZU3 A;  1LQI A;  1NGG A;  3ATU A;  2LKB A;  1ZVE A;  5FPN A;  2LY6 A;  1JZB A;  5EX5 A;  2E3G A;  2N2R A;  5AQI A;  1KAZ A;  1T7E A;  3GL1 A;  3L56 A;  4H5T A;  3KP0 A;  4H5V A;  3C7N B;  5AQN A;  1L4V A;  1I6F A;  1SEG A;  3AY9 A;  5EVZ A;  3JXU A;  5AQU A;  1NGJ A;  1B7D A;  5AQG A;  5AQY A;  5AR0 A;  2VY6 A;  1BA0 A;  3CQX A;  1ZYW A;  2NY8 X; 
#chains in the Genus database with same CATH homology
 2LN8 A;  1BA1 A;  2QWN A;  2E88 A;  2GMO A;  3A8Y A;  2E8A A;  4H5N A;  2BUP A;  1QQN A;  2E2F A;  2D56 A;  1ATR A;  3L4I A;  3SF4 D;  5AQT A;  2QWR A;  4FL9 A;  1KAY A;  4UAE F;  1QQM A;  5AQF A;  4IO8 A;  5BPN A;  5AQV A;  3C7N A;  1KAX A;  1HX1 A;  2MBK A;  3FZM A;  3L6Q A;  1HJO A;  1NGE A;  3LDL A;  3KHW A;  4KBO A;  3KVG A;  2KHO A;  2QXL A;  5EY4 A;  3I33 A;  1NGC A;  3D2F B;  3QFU A;  3D2E B;  3CW4 A;  1NGH A;  2QWO A;  3LDO A;  4GNI A;  5AQX A;  4H5W A;  4FSV A;  1NGA A;  2V7Z A;  5AQS A;  3D2E A;  5AQQ A;  3FZK A;  1ATS A;  1NGB A;  5F2R A;  5FPD A;  2MN5 A;  1BUP A;  3R2V A;  2QW9 A;  1NGD A;  3FZL A;  3KC6 A;  1YUW A;  3FZF A;  3FE1 A;  5AQW A;  5BPM A;  3HSC A;  1HPM A;  1QQO A;  2YIP A;  5AQP A;  3LDN A;  5AQZ A;  3LDP A;  3LDQ A;  3GDQ A;  5AQM A;  5FPM A;  1POI A;  3QI7 A;  3ATV A;  5FPE A;  4HWI A;  5F1X A;  5EXW A;  3D2F A;  3BK3 C;  5AQL A;  5AQJ A;  5F0X A;  5AQR A;  1S3X A;  5AQO A;  1NGF A;  3QFP A;  5AQH A;  3M3Z A;  2QWM A;  2JDQ D;  4UAD E;  3QML A;  2K35 A;  3IUC A;  1NGI A;  2QWL A;  5BN8 A;  4UAF E;  1DKG D;  2YIO A;  5AQK A;  5BN9 A;  3FZH A;  4H5R A;  5BPL A;  2YIL A;  2QWP A;  2QWQ A;  1NGG A;  5FPN A;  3ATU A;  5EX5 A;  5AQI A;  1KAZ A;  3GL1 A;  3L56 A;  4H5T A;  4H5V A;  3C7N B;  5AQN A;  3AY9 A;  5EVZ A;  3JXU A;  5AQU A;  1NGJ A;  5AQG A;  5AQY A;  5AR0 A;  2VY6 A;  1BA0 A;  3CQX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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