2LJ7A

3d solution structure of plant defensin lc-def
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
47
structure length
47
Chain Sequence
b'KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Defensin Lc-def
publication title Heterologous expression and solution structure of defensin from lentil Lens culinaris.
pubmed doi rcsb
source organism Lens culinaris subsp. culinaris
molecule tags Antimicrobial protein
total genus 3
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2011-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2lj7A00
3E7UX 1LQQA 1N4NA 1T7AA 2B68A 1ICAA 1I6FA 3E7RL 1T0ZA 1LQIA 2NY9X 1LQHA 1B3CA 2MZ0A 2KBKA 4KYPA 1NPIA 2YBRC 1AYJA 2YC1C 1WWNA 2M8BB 1DJTA 1BRZA 1WMTA 1TI5A 2LJMA 4HHFA 1B7DA 1MR4A 2E3FA 2LJ7A 1P00A 2I61A 1BCGA 2A7TA 1ZVEA 1I2VA 1GPTA 1ZVGA 2LI7A 2LT8A 1JZAA 1BMRA 1SN4A 1JKZA 2KSKA 1NRBA 2KYQA 1SNBA 1NE5A 1ZUTA 1MYNA 1FH3A 2LY6A 1DQ7A 2E3GA 5KK4A 1L4VA 2GL1A 1C55A 2N2QA 1NH5A 2BRZA 1I6GA 4HE7A 4CQKA 2KJAA 3PSMA 1NRAA 2E0HA 1CN2A 2KGQA 2LKBA 1WT7A 4UJ0A 1T7EA 1GPSA 1VNAA 1C56A 2N66A 2SN3A 1ZU3A 2ASCA 1OMYA 4AEIA 2NY8X 1AHOA 2N69A 1JZBA 1PTXA 2ATBA 1I2UA 1ZYVA 1ZYWA 2N2RA 2LR3A 1CHZA 5CY0A 1JXCA 1OZZA 1SEGA 2KBJA 1SN1A 1VNBA 2LY5A 2YEOA 1T7BA 1BK8A 1PX9A 2B3CA 1PE4A 1KV0A 4AB0A 4AAZA 1T1TA 1ZFUA 2KPYA 1P0AA 2KBHA 4V1DC
chains in the Genus database with same CATH superfamily
5AQYA 3E7UX 1LQQA 1N4NA 1T7AA 2B68A 3C7NB 3GL1A 1ICAA 5EXWA 1NGBA 1I6FA 2V7ZA 3KOXA 5BN8A 3LDQA 3C7NA 4H5RA 1S3XA 2E2FA 5AQSA 1NGJA 3BK3C 4IO8A 3FZMA 2YILA 4H5VA 4GNIA 1DKGD 1NGEA 3R2VA 5AQXA 2LN8A 3E7RL 3QFPA 3L56A 1XRSB 2QWQA 5F0XA 2QWRA 3SF4D 1T0ZA 3IUCA 1LQIA 1YUWA 2NY9X 1LQHA 3AY9A 2MZ0A 2KBKA 1HPMA 3KHWA 3KOZA 4HWIA 1B3CA 5BPLA 4KYPA 5AQMA 1NPIA 2YBRC 1AYJA 5AQOA 1BA0A 2YC1C 1WWNA 3D2EA 2G2KA 2M8BB 1DJTA 5EY4A 1BRZA 1WMTA 3FZKA 3L4IA 4HHFA 2E8AA 5AQFA 1TI5A 1QQOA 1NGFA 1B7DA 1MR4A 2E3FA 2LJ7A 2LJMA 3GDQA 1P00A 2I61A 2MBKA 2QWNA 3LDPA 1BCGA 1NGDA 2A7TA 1ZVEA 1I2VA 1UGLA 1GPTA 1ZVGA 2LI7A 2LT8A 1JZAA 1NGHA 2QWOA 1BMRA 1SN4A 1JKZA 2KSKA 1NRBA 1ATSA 2KYQA 1SNBA 1NE5A 5BPNA 1NGIA 1POIA 3KOYA 5FPEA 1ZUTA 2YIPA 1HX1A 3HSCA 1MYNA 1FH3A 2LY6A 2VY6A 5F1XA 1DQ7A 2E3GA 5AQZA 2D56A 5BPMA 5KK4A 5F2RA 5FPMA 2MN5A 2GL1A 2QWLA 5FPDA 2N2QA 2YIOA 5AQJA 1C55A 1NH5A 3D2FB 2QXLA 2K35A 2BRZA 4FSVA 1I6GA 4HE7A 4CQKA 2KJAA 3D2FA 5AQIA 5AQGA 1NGCA 3PSMA 4H5WA 1KAZA 2KHOA 1NRAA 1KAXA 3ATUA 3QFUA 1L4VA 2E88A 5AQVA 3LDNA 1QQMA 4KBOA 2E0HA 3CW4A 5AQNA 2GMOA 1CN2A 3KP0A 5AQQA 4FL9A 4UAFE 5FPNA 2KGQA 3A8YA 4H5TA 5AQPA 1BUPA 1KAYA 1WT7A 2LKBA 3M3ZA 4UJ0A 1T7EA 1GPSA 5EVZA 1VNAA 1C56A 2N66A 2QW9A 2SN3A 2QWMA 3I33A 1ZU3A 2ASCA 4H5NA 1OMYA 2QWPA 5AQRA 4UADE 4AEIA 5BN9A 3FE1A 5EX5A 1BA1A 1QQNA 3KOWA 5AQWA 2NY8X 1AHOA 2BUPA 1ATRA 1NGAA 3LDLA 2N69A 1JZBA 1PTXA 5AQUA 2ATBA 1I2UA 3L6QA 5AQHA 1ZYVA 1ZYWA 5AR0A 2N2RA 2LR3A 3FZFA 3QI7A 1K8BA 3KVGA 1CHZA 4UAEF 3ATVA 5CY0A 3KC6A 5AQTA 1JXCA 3FZHA 1OZZA 3KP1A 1SEGA 3LDOA 3QMLA 5AQLA 2KBJA 1SN1A 1VNBA 3CQXA 3FZLA 2LY5A 5AQKA 1NGGA 3D2EB 2YEOA 1T7BA 1BK8A 1PX9A 2B3CA 3JXUA 1PE4A 1KV0A 2JDQD 4AB0A 4AAZA 1T1TA 1ZFUA 3GKUA 2KPYA 1HJOA 1P0AA 2KBHA 4V1DC
chains in the Genus database with same CATH topology
3E7UX 1LQQA 1N4NA 1T7AA 2B68A 1ICAA 1I6FA 3E7RL 1T0ZA 1LQIA 2NY9X 1LQHA 1B3CA 2MZ0A 2KBKA 4KYPA 1NPIA 2YBRC 1AYJA 2YC1C 1WWNA 2M8BB 1DJTA 1BRZA 1WMTA 1TI5A 2LJMA 4HHFA 1B7DA 1MR4A 2E3FA 2LJ7A 1P00A 2I61A 1BCGA 2A7TA 1ZVEA 1I2VA 1GPTA 1ZVGA 2LI7A 2LT8A 1JZAA 1BMRA 1SN4A 1JKZA 2KSKA 1NRBA 2KYQA 1SNBA 1NE5A 1ZUTA 1MYNA 1FH3A 2LY6A 1DQ7A 2E3GA 5KK4A 1L4VA 2GL1A 1C55A 2N2QA 1NH5A 2BRZA 1I6GA 4HE7A 4CQKA 2KJAA 3PSMA 1NRAA 2E0HA 1CN2A 2KGQA 2LKBA 1WT7A 4UJ0A 1T7EA 1GPSA 1VNAA 1C56A 2N66A 2SN3A 1ZU3A 2ASCA 1OMYA 4AEIA 2NY8X 1AHOA 2N69A 1JZBA 1PTXA 2ATBA 1I2UA 1ZYVA 1ZYWA 2N2RA 2LR3A 1CHZA 5CY0A 1JXCA 1OZZA 1SEGA 2KBJA 1SN1A 1VNBA 2LY5A 2YEOA 1T7BA 1BK8A 1PX9A 2B3CA 1PE4A 1KV0A 4AB0A 4AAZA 1T1TA 1ZFUA 2KPYA 1P0AA 2KBHA 4V1DC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E7U X;  1LQQ A;  1N4N A;  1T7A A;  2B68 A;  1ICA A;  1I6F A;  3E7R L;  1T0Z A;  1LQI A;  2NY9 X;  1LQH A;  1B3C A;  2MZ0 A;  2KBK A;  4KYP A;  1NPI A;  2YBR C;  1AYJ A;  2YC1 C;  1WWN A;  2M8B B;  1DJT A;  1BRZ A;  1WMT A;  1TI5 A;  2LJM A;  4HHF A;  1B7D A;  1MR4 A;  2E3F A;  2LJ7 A;  1P00 A;  2I61 A;  1BCG A;  2A7T A;  1ZVE A;  1I2V A;  1GPT A;  1ZVG A;  2LI7 A;  2LT8 A;  1JZA A;  1BMR A;  1SN4 A;  1JKZ A;  2KSK A;  1NRB A;  2KYQ A;  1SNB A;  1NE5 A;  1ZUT A;  1MYN A;  1FH3 A;  2LY6 A;  1DQ7 A;  2E3G A;  5KK4 A;  1L4V A;  2GL1 A;  1C55 A;  2N2Q A;  1NH5 A;  2BRZ A;  1I6G A;  4HE7 A;  4CQK A;  2KJA A;  3PSM A;  1NRA A;  2E0H A;  1CN2 A;  2KGQ A;  2LKB A;  1WT7 A;  4UJ0 A;  1T7E A;  1GPS A;  1VNA A;  1C56 A;  2N66 A;  2SN3 A;  1ZU3 A;  2ASC A;  1OMY A;  4AEI A;  2NY8 X;  1AHO A;  2N69 A;  1JZB A;  1PTX A;  2ATB A;  1I2U A;  1ZYV A;  1ZYW A;  2N2R A;  2LR3 A;  1CHZ A;  5CY0 A;  1JXC A;  1OZZ A;  1SEG A;  2KBJ A;  1SN1 A;  1VNB A;  2LY5 A;  2YEO A;  1T7B A;  1BK8 A;  1PX9 A;  2B3C A;  1PE4 A;  1KV0 A;  4AB0 A;  4AAZ A;  1T1T A;  1ZFU A;  2KPY A;  1P0A A;  2KBH A;  4V1D C; 
#chains in the Genus database with same CATH topology
 5AQY A;  3E7U X;  1LQQ A;  1N4N A;  1T7A A;  2B68 A;  3C7N B;  3GL1 A;  1ICA A;  5EXW A;  1NGB A;  1I6F A;  2V7Z A;  3KOX A;  5BN8 A;  3LDQ A;  3C7N A;  4H5R A;  1S3X A;  2E2F A;  5AQS A;  1NGJ A;  3BK3 C;  4IO8 A;  3FZM A;  2YIL A;  4H5V A;  4GNI A;  1DKG D;  1NGE A;  3R2V A;  5AQX A;  2LN8 A;  3E7R L;  3QFP A;  3L56 A;  1XRS B;  2QWQ A;  5F0X A;  2QWR A;  3SF4 D;  1T0Z A;  3IUC A;  1LQI A;  1YUW A;  2NY9 X;  1LQH A;  3AY9 A;  2MZ0 A;  2KBK A;  1HPM A;  3KHW A;  3KOZ A;  4HWI A;  1B3C A;  5BPL A;  4KYP A;  5AQM A;  1NPI A;  2YBR C;  1AYJ A;  5AQO A;  1BA0 A;  2YC1 C;  1WWN A;  3D2E A;  2G2K A;  2M8B B;  1DJT A;  5EY4 A;  1BRZ A;  1WMT A;  3FZK A;  3L4I A;  4HHF A;  2E8A A;  5AQF A;  1TI5 A;  1QQO A;  1NGF A;  1B7D A;  1MR4 A;  2E3F A;  2LJ7 A;  2LJM A;  3GDQ A;  1P00 A;  2I61 A;  2MBK A;  2QWN A;  3LDP A;  1BCG A;  1NGD A;  2A7T A;  1ZVE A;  1I2V A;  1UGL A;  1GPT A;  1ZVG A;  2LI7 A;  2LT8 A;  1JZA A;  1NGH A;  2QWO A;  1BMR A;  1SN4 A;  1JKZ A;  2KSK A;  1NRB A;  1ATS A;  2KYQ A;  1SNB A;  1NE5 A;  5BPN A;  1NGI A;  1POI A;  3KOY A;  5FPE A;  1ZUT A;  2YIP A;  1HX1 A;  3HSC A;  1MYN A;  1FH3 A;  2LY6 A;  2VY6 A;  5F1X A;  1DQ7 A;  2E3G A;  5AQZ A;  2D56 A;  5BPM A;  5KK4 A;  5F2R A;  5FPM A;  2MN5 A;  2GL1 A;  2QWL A;  5FPD A;  2N2Q A;  2YIO A;  5AQJ A;  1C55 A;  1NH5 A;  3D2F B;  2QXL A;  2K35 A;  2BRZ A;  4FSV A;  1I6G A;  4HE7 A;  4CQK A;  2KJA A;  3D2F A;  5AQI A;  5AQG A;  1NGC A;  3PSM A;  4H5W A;  1KAZ A;  2KHO A;  1NRA A;  1KAX A;  3ATU A;  3QFU A;  1L4V A;  2E88 A;  5AQV A;  3LDN A;  1QQM A;  4KBO A;  2E0H A;  3CW4 A;  5AQN A;  2GMO A;  1CN2 A;  3KP0 A;  5AQQ A;  4FL9 A;  4UAF E;  5FPN A;  2KGQ A;  3A8Y A;  4H5T A;  5AQP A;  1BUP A;  1KAY A;  1WT7 A;  2LKB A;  3M3Z A;  4UJ0 A;  1T7E A;  1GPS A;  5EVZ A;  1VNA A;  1C56 A;  2N66 A;  2QW9 A;  2SN3 A;  2QWM A;  3I33 A;  1ZU3 A;  2ASC A;  4H5N A;  1OMY A;  2QWP A;  5AQR A;  4UAD E;  4AEI A;  5BN9 A;  3FE1 A;  5EX5 A;  1BA1 A;  1QQN A;  3KOW A;  5AQW A;  2NY8 X;  1AHO A;  2BUP A;  1ATR A;  1NGA A;  3LDL A;  2N69 A;  1JZB A;  1PTX A;  5AQU A;  2ATB A;  1I2U A;  3L6Q A;  5AQH A;  1ZYV A;  1ZYW A;  5AR0 A;  2N2R A;  2LR3 A;  3FZF A;  3QI7 A;  1K8B A;  3KVG A;  1CHZ A;  4UAE F;  3ATV A;  5CY0 A;  3KC6 A;  5AQT A;  1JXC A;  3FZH A;  1OZZ A;  3KP1 A;  1SEG A;  3LDO A;  3QML A;  5AQL A;  2KBJ A;  1SN1 A;  1VNB A;  3CQX A;  3FZL A;  2LY5 A;  5AQK A;  1NGG A;  3D2E B;  2YEO A;  1T7B A;  1BK8 A;  1PX9 A;  2B3C A;  3JXU A;  1PE4 A;  1KV0 A;  2JDQ D;  4AB0 A;  4AAZ A;  1T1T A;  1ZFU A;  3GKU A;  2KPY A;  1HJO A;  1P0A A;  2KBH A;  4V1D C; 
#chains in the Genus database with same CATH homology
 3E7U X;  1LQQ A;  1N4N A;  1T7A A;  2B68 A;  1ICA A;  1I6F A;  3E7R L;  1T0Z A;  1LQI A;  2NY9 X;  1LQH A;  1B3C A;  2MZ0 A;  2KBK A;  4KYP A;  1NPI A;  2YBR C;  1AYJ A;  2YC1 C;  1WWN A;  2M8B B;  1DJT A;  1BRZ A;  1WMT A;  1TI5 A;  2LJM A;  4HHF A;  1B7D A;  1MR4 A;  2E3F A;  2LJ7 A;  1P00 A;  2I61 A;  1BCG A;  2A7T A;  1ZVE A;  1I2V A;  1GPT A;  1ZVG A;  2LI7 A;  2LT8 A;  1JZA A;  1BMR A;  1SN4 A;  1JKZ A;  2KSK A;  1NRB A;  2KYQ A;  1SNB A;  1NE5 A;  1ZUT A;  1MYN A;  1FH3 A;  2LY6 A;  1DQ7 A;  2E3G A;  5KK4 A;  1L4V A;  2GL1 A;  1C55 A;  2N2Q A;  1NH5 A;  2BRZ A;  1I6G A;  4HE7 A;  4CQK A;  2KJA A;  3PSM A;  1NRA A;  2E0H A;  1CN2 A;  2KGQ A;  2LKB A;  1WT7 A;  4UJ0 A;  1T7E A;  1GPS A;  1VNA A;  1C56 A;  2N66 A;  2SN3 A;  1ZU3 A;  2ASC A;  1OMY A;  4AEI A;  2NY8 X;  1AHO A;  2N69 A;  1JZB A;  1PTX A;  2ATB A;  1I2U A;  1ZYV A;  1ZYW A;  2N2R A;  2LR3 A;  1CHZ A;  5CY0 A;  1JXC A;  1OZZ A;  1SEG A;  2KBJ A;  1SN1 A;  1VNB A;  2LY5 A;  2YEO A;  1T7B A;  1BK8 A;  1PX9 A;  2B3C A;  1PE4 A;  1KV0 A;  4AB0 A;  4AAZ A;  1T1T A;  1ZFU A;  2KPY A;  1P0A A;  2KBH A;  4V1D C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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