2LJ7A

3d solution structure of plant defensin lc-def
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
47
structure length
47
Chain Sequence
KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Defensin Lc-def
publication title Heterologous expression and solution structure of defensin from lentil Lens culinaris.
pubmed doi rcsb
source organism Lens culinaris subsp. culinaris
molecule tags Antimicrobial protein
total genus 3
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2011-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2lj7A00
2KBJA 1GPTA 5KK4A 1C55A 1ZUTA 1OMYA 2KYQA 4UJ0A 1I6GA 1I2VA 1NH5A 1T0ZA 1NPIA 2ASCA 2YEOA 1BK8A 2LR3A 1ZVEA 1P00A 1ZVGA 1JXCA 1ZYVA 1SNBA 1ZYWA 1BCGA 4AEIA 2LT8A 1L4VA 2N2QA 2LJ7A 3E7RL 1PTXA 1AYJA 1T7BA 5CY0A 1ZU3A 2NY8X 2N66A 2B68A 1B3CA 1FH3A 1NRBA 1I6FA 2N69A 4V1DC 1LQHA 1MYNA 2B3CA 2KBHA 1VNAA 2E0HA 4AB0A 2KPYA 1ICAA 1WT7A 1WMTA 1T1TA 2LI7A 1T7EA 3PSMA 2NY9X 1SN4A 1B7DA 4HHFA 1BMRA 4HE7A 3E7UX 1GPSA 2MZ0A 1JZBA 1ZFUA 1CHZA 1C56A 1T7AA 1KV0A 2KBKA 1PX9A 1WWNA 1NE5A 2KSKA 1OZZA 1DQ7A 1N4NA 2E3GA 1VNBA 2N2RA 1LQIA 2LY5A 2I61A 4AAZA 1AHOA 1BRZA 1JZAA 1PE4A 2YC1C 2YBRC 2A7TA 1DJTA 1MR4A 1LQQA 1SN1A 2E3FA 1TI5A 2KJAA 2LJMA 2ATBA 1I2UA 1P0AA 1SEGA 2SN3A 2LY6A 2GL1A 2BRZA 1CN2A 1NRAA 4KYPA 2KGQA 1JKZA 2LKBA 4CQKA 2M8BB
chains in the Genus database with same CATH superfamily
2JDQD 1NGJA 2KBJA 3C7NA 1GPTA 4IO8A 5KK4A 5BPMA 1QQMA 1C55A 1ZUTA 5BPLA 1NGFA 1OMYA 1KAXA 2KYQA 3ATUA 2MN5A 3KHWA 4UJ0A 1I6GA 3LDPA 5EY4A 3FE1A 3GDQA 1I2VA 5EVZA 2LN8A 1NH5A 3D2FB 3LDLA 4H5TA 4UAEF 5AQTA 5EX5A 1T0ZA 3GKUA 1NPIA 2ASCA 2YEOA 1BK8A 2LR3A 1ZVEA 3LDOA 1P00A 1ZVGA 1UGLA 3GL1A 3QI7A 5BN9A 2GMOA 1JXCA 1POIA 2YILA 1K8BA 5FPMA 4H5NA 2QWNA 1ZYVA 5AQFA 3AY9A 2QWMA 1NGIA 3D2EB 1SNBA 3BK3C 2E2FA 3FZLA 5AQYA 2YIPA 1DKGD 3CW4A 1ZYWA 1HJOA 1BCGA 3C7NB 5AQHA 4AEIA 3QFPA 5BN8A 2LT8A 1YUWA 1L4VA 2N2QA 2LJ7A 3E7RL 1PTXA 5AQOA 1AYJA 3KP1A 5F1XA 1T7BA 4FSVA 5AQKA 5CY0A 1ZU3A 2NY8X 3KC6A 2N66A 2D56A 2B68A 1B3CA 3IUCA 1FH3A 5AQRA 4KBOA 1NGCA 5AQVA 1BA1A 2QWQA 3L6QA 1NRBA 1I6FA 2N69A 3HSCA 1HX1A 3JXUA 4V1DC 5FPDA 2QWOA 3L4IA 1NGEA 1LQHA 1KAZA 1MYNA 2B3CA 5AQSA 3QMLA 2KBHA 5AQQA 1VNAA 2E0HA 2MBKA 4H5RA 3SF4D 4AB0A 2VY6A 2KPYA 4GNIA 5AQPA 1ICAA 1WT7A 1WMTA 1ATSA 1XRSB 1T1TA 2LI7A 1T7EA 2M8BB 1NGAA 3PSMA 3M3ZA 2NY9X 1SN4A 1BUPA 1B7DA 4HHFA 1BMRA 5BPNA 4HE7A 1HPMA 1ATRA 5AR0A 3E7UX 1GPSA 2KHOA 3KOWA 2MZ0A 1JZBA 1ZFUA 3CQXA 3KOZA 3R2VA 1CHZA 1NGDA 4UADE 1NGBA 2QWLA 2QWPA 1C56A 1T7AA 1KV0A 2KBKA 3L56A 1BA0A 1PX9A 1WWNA 1NE5A 1NGHA 2KSKA 2QW9A 3KOXA 5FPEA 5AQMA 3A8YA 3I33A 1OZZA 1DQ7A 2E88A 3KP0A 1N4NA 3FZKA 2YIOA 5AQIA 3KOYA 2BUPA 2E3GA 1VNBA 2V7ZA 2N2RA 4FL9A 5F0XA 1LQIA 2LY5A 5AQXA 4H5VA 2I61A 4AAZA 1AHOA 1BRZA 1JZAA 1NGGA 1PE4A 5FPNA 4CQKA 5AQZA 2YC1C 2YBRC 2A7TA 1DJTA 1LQQA 1MR4A 1SN1A 1QQNA 3QFUA 2E3FA 3LDNA 1TI5A 4HWIA 5AQUA 1S3XA 2KJAA 2LJMA 5AQJA 5AQWA 2QXLA 2K35A 2ATBA 3D2FA 5AQGA 3KVGA 2QWRA 5AQNA 1I2UA 5AQLA 1P0AA 3FZMA 1SEGA 2SN3A 5EXWA 2LY6A 4H5WA 3FZFA 2E8AA 2GL1A 2BRZA 3FZHA 1CN2A 1NRAA 1QQOA 4KYPA 3D2EA 1KAYA 3LDQA 2KGQA 5F2RA 1JKZA 2LKBA 4UAFE 3ATVA 2G2KA
chains in the Genus database with same CATH topology
2KBJA 1GPTA 5KK4A 1C55A 1ZUTA 1OMYA 2KYQA 4UJ0A 1I6GA 1I2VA 1NH5A 1T0ZA 1NPIA 2ASCA 2YEOA 1BK8A 2LR3A 1ZVEA 1P00A 1ZVGA 1JXCA 1ZYVA 1SNBA 1ZYWA 1BCGA 4AEIA 2LT8A 1L4VA 2N2QA 2LJ7A 3E7RL 1PTXA 1AYJA 1T7BA 5CY0A 1ZU3A 2NY8X 2N66A 2B68A 1B3CA 1FH3A 1NRBA 1I6FA 2N69A 4V1DC 1LQHA 1MYNA 2B3CA 2KBHA 1VNAA 2E0HA 4AB0A 2KPYA 1ICAA 1WT7A 1WMTA 1T1TA 2LI7A 1T7EA 3PSMA 2NY9X 1SN4A 1B7DA 4HHFA 1BMRA 4HE7A 3E7UX 1GPSA 2MZ0A 1JZBA 1ZFUA 1CHZA 1C56A 1T7AA 1KV0A 2KBKA 1PX9A 1WWNA 1NE5A 2KSKA 1OZZA 1DQ7A 1N4NA 2E3GA 1VNBA 2N2RA 1LQIA 2LY5A 2I61A 4AAZA 1AHOA 1BRZA 1JZAA 1PE4A 2YC1C 2YBRC 2A7TA 1DJTA 1MR4A 1LQQA 1SN1A 2E3FA 1TI5A 2KJAA 2LJMA 2ATBA 1I2UA 1P0AA 1SEGA 2SN3A 2LY6A 2GL1A 2BRZA 1CN2A 1NRAA 4KYPA 2KGQA 1JKZA 2LKBA 4CQKA 2M8BB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KBJ A;  1GPT A;  5KK4 A;  1C55 A;  1ZUT A;  1OMY A;  2KYQ A;  4UJ0 A;  1I6G A;  1I2V A;  1NH5 A;  1T0Z A;  1NPI A;  2ASC A;  2YEO A;  1BK8 A;  2LR3 A;  1ZVE A;  1P00 A;  1ZVG A;  1JXC A;  1ZYV A;  1SNB A;  1ZYW A;  1BCG A;  4AEI A;  2LT8 A;  1L4V A;  2N2Q A;  2LJ7 A;  3E7R L;  1PTX A;  1AYJ A;  1T7B A;  5CY0 A;  1ZU3 A;  2NY8 X;  2N66 A;  2B68 A;  1B3C A;  1FH3 A;  1NRB A;  1I6F A;  2N69 A;  4V1D C;  1LQH A;  1MYN A;  2B3C A;  2KBH A;  1VNA A;  2E0H A;  4AB0 A;  2KPY A;  1ICA A;  1WT7 A;  1WMT A;  1T1T A;  2LI7 A;  1T7E A;  3PSM A;  2NY9 X;  1SN4 A;  1B7D A;  4HHF A;  1BMR A;  4HE7 A;  3E7U X;  1GPS A;  2MZ0 A;  1JZB A;  1ZFU A;  1CHZ A;  1C56 A;  1T7A A;  1KV0 A;  2KBK A;  1PX9 A;  1WWN A;  1NE5 A;  2KSK A;  1OZZ A;  1DQ7 A;  1N4N A;  2E3G A;  1VNB A;  2N2R A;  1LQI A;  2LY5 A;  2I61 A;  4AAZ A;  1AHO A;  1BRZ A;  1JZA A;  1PE4 A;  2YC1 C;  2YBR C;  2A7T A;  1DJT A;  1MR4 A;  1LQQ A;  1SN1 A;  2E3F A;  1TI5 A;  2KJA A;  2LJM A;  2ATB A;  1I2U A;  1P0A A;  1SEG A;  2SN3 A;  2LY6 A;  2GL1 A;  2BRZ A;  1CN2 A;  1NRA A;  4KYP A;  2KGQ A;  1JKZ A;  2LKB A;  4CQK A;  2M8B B; 
#chains in the Genus database with same CATH topology
 2JDQ D;  1NGJ A;  2KBJ A;  3C7N A;  1GPT A;  4IO8 A;  5KK4 A;  5BPM A;  1QQM A;  1C55 A;  1ZUT A;  5BPL A;  1NGF A;  1OMY A;  1KAX A;  2KYQ A;  3ATU A;  2MN5 A;  3KHW A;  4UJ0 A;  1I6G A;  3LDP A;  5EY4 A;  3FE1 A;  3GDQ A;  1I2V A;  5EVZ A;  2LN8 A;  1NH5 A;  3D2F B;  3LDL A;  4H5T A;  4UAE F;  5AQT A;  5EX5 A;  1T0Z A;  3GKU A;  1NPI A;  2ASC A;  2YEO A;  1BK8 A;  2LR3 A;  1ZVE A;  3LDO A;  1P00 A;  1ZVG A;  1UGL A;  3GL1 A;  3QI7 A;  5BN9 A;  2GMO A;  1JXC A;  1POI A;  2YIL A;  1K8B A;  5FPM A;  4H5N A;  2QWN A;  1ZYV A;  5AQF A;  3AY9 A;  2QWM A;  1NGI A;  3D2E B;  1SNB A;  3BK3 C;  2E2F A;  3FZL A;  5AQY A;  2YIP A;  1DKG D;  3CW4 A;  1ZYW A;  1HJO A;  1BCG A;  3C7N B;  5AQH A;  4AEI A;  3QFP A;  5BN8 A;  2LT8 A;  1YUW A;  1L4V A;  2N2Q A;  2LJ7 A;  3E7R L;  1PTX A;  5AQO A;  1AYJ A;  3KP1 A;  5F1X A;  1T7B A;  4FSV A;  5AQK A;  5CY0 A;  1ZU3 A;  2NY8 X;  3KC6 A;  2N66 A;  2D56 A;  2B68 A;  1B3C A;  3IUC A;  1FH3 A;  5AQR A;  4KBO A;  1NGC A;  5AQV A;  1BA1 A;  2QWQ A;  3L6Q A;  1NRB A;  1I6F A;  2N69 A;  3HSC A;  1HX1 A;  3JXU A;  4V1D C;  5FPD A;  2QWO A;  3L4I A;  1NGE A;  1LQH A;  1KAZ A;  1MYN A;  2B3C A;  5AQS A;  3QML A;  2KBH A;  5AQQ A;  1VNA A;  2E0H A;  2MBK A;  4H5R A;  3SF4 D;  4AB0 A;  2VY6 A;  2KPY A;  4GNI A;  5AQP A;  1ICA A;  1WT7 A;  1WMT A;  1ATS A;  1XRS B;  1T1T A;  2LI7 A;  1T7E A;  2M8B B;  1NGA A;  3PSM A;  3M3Z A;  2NY9 X;  1SN4 A;  1BUP A;  1B7D A;  4HHF A;  1BMR A;  5BPN A;  4HE7 A;  1HPM A;  1ATR A;  5AR0 A;  3E7U X;  1GPS A;  2KHO A;  3KOW A;  2MZ0 A;  1JZB A;  1ZFU A;  3CQX A;  3KOZ A;  3R2V A;  1CHZ A;  1NGD A;  4UAD E;  1NGB A;  2QWL A;  2QWP A;  1C56 A;  1T7A A;  1KV0 A;  2KBK A;  3L56 A;  1BA0 A;  1PX9 A;  1WWN A;  1NE5 A;  1NGH A;  2KSK A;  2QW9 A;  3KOX A;  5FPE A;  5AQM A;  3A8Y A;  3I33 A;  1OZZ A;  1DQ7 A;  2E88 A;  3KP0 A;  1N4N A;  3FZK A;  2YIO A;  5AQI A;  3KOY A;  2BUP A;  2E3G A;  1VNB A;  2V7Z A;  2N2R A;  4FL9 A;  5F0X A;  1LQI A;  2LY5 A;  5AQX A;  4H5V A;  2I61 A;  4AAZ A;  1AHO A;  1BRZ A;  1JZA A;  1NGG A;  1PE4 A;  5FPN A;  4CQK A;  5AQZ A;  2YC1 C;  2YBR C;  2A7T A;  1DJT A;  1LQQ A;  1MR4 A;  1SN1 A;  1QQN A;  3QFU A;  2E3F A;  3LDN A;  1TI5 A;  4HWI A;  5AQU A;  1S3X A;  2KJA A;  2LJM A;  5AQJ A;  5AQW A;  2QXL A;  2K35 A;  2ATB A;  3D2F A;  5AQG A;  3KVG A;  2QWR A;  5AQN A;  1I2U A;  5AQL A;  1P0A A;  3FZM A;  1SEG A;  2SN3 A;  5EXW A;  2LY6 A;  4H5W A;  3FZF A;  2E8A A;  2GL1 A;  2BRZ A;  3FZH A;  1CN2 A;  1NRA A;  1QQO A;  4KYP A;  3D2E A;  1KAY A;  3LDQ A;  2KGQ A;  5F2R A;  1JKZ A;  2LKB A;  4UAF E;  3ATV A;  2G2K A; 
#chains in the Genus database with same CATH homology
 2KBJ A;  1GPT A;  5KK4 A;  1C55 A;  1ZUT A;  1OMY A;  2KYQ A;  4UJ0 A;  1I6G A;  1I2V A;  1NH5 A;  1T0Z A;  1NPI A;  2ASC A;  2YEO A;  1BK8 A;  2LR3 A;  1ZVE A;  1P00 A;  1ZVG A;  1JXC A;  1ZYV A;  1SNB A;  1ZYW A;  1BCG A;  4AEI A;  2LT8 A;  1L4V A;  2N2Q A;  2LJ7 A;  3E7R L;  1PTX A;  1AYJ A;  1T7B A;  5CY0 A;  1ZU3 A;  2NY8 X;  2N66 A;  2B68 A;  1B3C A;  1FH3 A;  1NRB A;  1I6F A;  2N69 A;  4V1D C;  1LQH A;  1MYN A;  2B3C A;  2KBH A;  1VNA A;  2E0H A;  4AB0 A;  2KPY A;  1ICA A;  1WT7 A;  1WMT A;  1T1T A;  2LI7 A;  1T7E A;  3PSM A;  2NY9 X;  1SN4 A;  1B7D A;  4HHF A;  1BMR A;  4HE7 A;  3E7U X;  1GPS A;  2MZ0 A;  1JZB A;  1ZFU A;  1CHZ A;  1C56 A;  1T7A A;  1KV0 A;  2KBK A;  1PX9 A;  1WWN A;  1NE5 A;  2KSK A;  1OZZ A;  1DQ7 A;  1N4N A;  2E3G A;  1VNB A;  2N2R A;  1LQI A;  2LY5 A;  2I61 A;  4AAZ A;  1AHO A;  1BRZ A;  1JZA A;  1PE4 A;  2YC1 C;  2YBR C;  2A7T A;  1DJT A;  1MR4 A;  1LQQ A;  1SN1 A;  2E3F A;  1TI5 A;  2KJA A;  2LJM A;  2ATB A;  1I2U A;  1P0A A;  1SEG A;  2SN3 A;  2LY6 A;  2GL1 A;  2BRZ A;  1CN2 A;  1NRA A;  4KYP A;  2KGQ A;  1JKZ A;  2LKB A;  4CQK A;  2M8B B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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