2LJ7A

3d solution structure of plant defensin lc-def
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
47
structure length
47
Chain Sequence
KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords Defensin Lc-def
publication title Heterologous expression and solution structure of defensin from lentil Lens culinaris.
pubmed doi rcsb
source organism Lens culinaris subsp. culinaris
total genus 3
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2011-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2lj7A00
2KSKA 1T1TA 4AB0A 2YEOA 1ZUTA 2YBRC 2LR3A 5KK4A 2KBKA 2LI7A 2GL1A 2LJMA 3E7RL 1NRAA 2KGQA 2B3CA 1AYJA 1CN2A 1SEGA 2LKBA 1LQQA 1OMYA 1T7BA 4HHFA 1DJTA 1ZVEA 2LJ7A 2BRZA 1B3CA 1BMRA 1C56A 1JXCA 2LY5A 1BRZA 1ICAA 1SN1A 4CQKA 4UJ0A 1BK8A 1ZVGA 1MR4A 1I2VA 1JZAA 1P00A 1SN4A 2E0HA 2B68A 1WWNA 1FH3A 2E3FA 2N2QA 4KYPA 1GPTA 4HE7A 1P0AA 1PX9A 2LT8A 1LQIA 4AEIA 1NRBA 2KBJA 3E7UX 1I6FA 2YC1C 2E3GA 2LY6A 1JZBA 1I2UA 1B7DA 2A7TA 1LQHA 1MYNA 1NE5A 1L4VA 1OZZA 2KPYA 2SN3A 2KBHA 2M8BB 4V1DC 1KV0A 2N69A 1ZFUA 1N4NA 1ZYVA 1NH5A 1ZYWA 2NY9X 2MZ0A 2NY8X 4AAZA 2ATBA 1ZU3A 3PSMA 5CY0A 1TI5A 1WT7A 1I6GA 2KYQA 1AHOA 1PE4A 1DQ7A 1T7AA 1VNBA 1C55A 1JKZA 1T0ZA 1SNBA 1GPSA 1NPIA 1T7EA 2N66A 1WMTA 1PTXA 2KJAA 2ASCA 2I61A 1BCGA 2N2RA 1VNAA 1CHZA
chains in the Genus database with same CATH superfamily
3FZLA 2KSKA 1T1TA 2QWLA 4AB0A 1NGFA 2MBKA 1NGGA 4H5NA 1ATSA 2QW9A 2YEOA 1ZUTA 2YILA 2YBRC 1BA0A 2LR3A 3KP0A 5KK4A 2KBKA 3ATUA 2LI7A 3KC6A 5F0XA 1K8BA 1NGDA 3FZFA 5AQOA 3QMLA 5AQZA 2GL1A 1NGEA 2LJMA 2KHOA 2QWPA 2VY6A 5BPMA 5F1XA 1POIA 2E2FA 5FPEA 2QWQA 3E7RL 1NGHA 3D2EB 3C7NA 1NRAA 2KGQA 3CW4A 2B3CA 1AYJA 1NGIA 1KAYA 2QWNA 3KOYA 1CN2A 1SEGA 4H5RA 1QQNA 2LKBA 3KOWA 1LQQA 5FPMA 1OMYA 3LDOA 3LDLA 1S3XA 2BUPA 1ATRA 1BA1A 1QQOA 3GDQA 3KP1A 1T7BA 3QFPA 3FE1A 3KOZA 4HHFA 1DJTA 1ZVEA 1NGCA 5AQIA 4GNIA 5EX5A 2LJ7A 2BRZA 4H5VA 3LDQA 4HWIA 4KBOA 1B3CA 1BMRA 1C56A 1JXCA 2LY5A 3LDNA 5F2RA 1BRZA 1ICAA 1SN1A 2GMOA 4CQKA 4UJ0A 3LDPA 5AQMA 1BK8A 5EXWA 1NGAA 1ZVGA 5EY4A 1MR4A 2LN8A 2V7ZA 4FSVA 1BUPA 4H5WA 5AQNA 1I2VA 1JZAA 3BK3C 1P00A 1SN4A 2E0HA 2B68A 3D2FA 2K35A 1WWNA 5AR0A 1FH3A 5BN9A 5AQHA 2E3FA 2JDQD 2N2QA 4KYPA 3GKUA 1GPTA 3JXUA 4HE7A 1P0AA 1PX9A 2LT8A 1LQIA 3R2VA 4AEIA 1NRBA 3D2EA 2KBJA 4IO8A 5AQVA 3ATVA 3E7UX 1HJOA 3GL1A 1I6FA 2YC1C 2G2KA 3SF4D 2E3GA 2LY6A 1JZBA 5AQWA 1I2UA 1B7DA 4UAFE 2D56A 3C7NB 3L6QA 1XRSB 2A7TA 1LQHA 1MYNA 1NE5A 3AY9A 1KAXA 5AQPA 1OZZA 5AQXA 5AQTA 1L4VA 2KPYA 2E88A 1NGBA 2SN3A 3CQXA 3FZKA 3HSCA 4UADE 5AQYA 5BPNA 2KBHA 5AQSA 1KAZA 1NGJA 2M8BB 4V1DC 4UAEF 1UGLA 5AQUA 1KV0A 5FPDA 3KOXA 5AQLA 3KVGA 5AQRA 5AQKA 2N69A 2YIPA 3IUCA 2QWMA 1ZFUA 3I33A 1HPMA 1N4NA 1YUWA 1ZYVA 1NH5A 1ZYWA 1QQMA 2NY9X 2MZ0A 5AQJA 2QWOA 3L4IA 2NY8X 4AAZA 2ATBA 3L56A 1ZU3A 5AQGA 3PSMA 5CY0A 1TI5A 4FL9A 1WT7A 1I6GA 2KYQA 3FZHA 5BN8A 2QWRA 1AHOA 1PE4A 1DQ7A 1T7AA 1VNBA 3D2FB 3M3ZA 4H5TA 1C55A 3KHWA 5FPNA 1JKZA 1T0ZA 5BPLA 1DKGD 1SNBA 1GPSA 1NPIA 1T7EA 5EVZA 2N66A 1WMTA 1PTXA 2QXLA 2E8AA 3FZMA 2MN5A 2KJAA 3A8YA 5AQQA 2ASCA 3QFUA 3QI7A 2I61A 1BCGA 2N2RA 1VNAA 1CHZA 1HX1A 2YIOA 5AQFA
chains in the Genus database with same CATH topology
2KSKA 1T1TA 4AB0A 2YEOA 1ZUTA 2YBRC 2LR3A 5KK4A 2KBKA 2LI7A 2GL1A 2LJMA 3E7RL 1NRAA 2KGQA 2B3CA 1AYJA 1CN2A 1SEGA 2LKBA 1LQQA 1OMYA 1T7BA 4HHFA 1DJTA 1ZVEA 2LJ7A 2BRZA 1B3CA 1BMRA 1C56A 1JXCA 2LY5A 1BRZA 1ICAA 1SN1A 4CQKA 4UJ0A 1BK8A 1ZVGA 1MR4A 1I2VA 1JZAA 1P00A 1SN4A 2E0HA 2B68A 1WWNA 1FH3A 2E3FA 2N2QA 4KYPA 1GPTA 4HE7A 1P0AA 1PX9A 2LT8A 1LQIA 4AEIA 1NRBA 2KBJA 3E7UX 1I6FA 2YC1C 2E3GA 2LY6A 1JZBA 1I2UA 1B7DA 2A7TA 1LQHA 1MYNA 1NE5A 1L4VA 1OZZA 2KPYA 2SN3A 2KBHA 2M8BB 4V1DC 1KV0A 2N69A 1ZFUA 1N4NA 1ZYVA 1NH5A 1ZYWA 2NY9X 2MZ0A 2NY8X 4AAZA 2ATBA 1ZU3A 3PSMA 5CY0A 1TI5A 1WT7A 1I6GA 2KYQA 1AHOA 1PE4A 1DQ7A 1T7AA 1VNBA 1C55A 1JKZA 1T0ZA 1SNBA 1GPSA 1NPIA 1T7EA 2N66A 1WMTA 1PTXA 2KJAA 2ASCA 2I61A 1BCGA 2N2RA 1VNAA 1CHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KSK A;  1T1T A;  4AB0 A;  2YEO A;  1ZUT A;  2YBR C;  2LR3 A;  5KK4 A;  2KBK A;  2LI7 A;  2GL1 A;  2LJM A;  3E7R L;  1NRA A;  2KGQ A;  2B3C A;  1AYJ A;  1CN2 A;  1SEG A;  2LKB A;  1LQQ A;  1OMY A;  1T7B A;  4HHF A;  1DJT A;  1ZVE A;  2LJ7 A;  2BRZ A;  1B3C A;  1BMR A;  1C56 A;  1JXC A;  2LY5 A;  1BRZ A;  1ICA A;  1SN1 A;  4CQK A;  4UJ0 A;  1BK8 A;  1ZVG A;  1MR4 A;  1I2V A;  1JZA A;  1P00 A;  1SN4 A;  2E0H A;  2B68 A;  1WWN A;  1FH3 A;  2E3F A;  2N2Q A;  4KYP A;  1GPT A;  4HE7 A;  1P0A A;  1PX9 A;  2LT8 A;  1LQI A;  4AEI A;  1NRB A;  2KBJ A;  3E7U X;  1I6F A;  2YC1 C;  2E3G A;  2LY6 A;  1JZB A;  1I2U A;  1B7D A;  2A7T A;  1LQH A;  1MYN A;  1NE5 A;  1L4V A;  1OZZ A;  2KPY A;  2SN3 A;  2KBH A;  2M8B B;  4V1D C;  1KV0 A;  2N69 A;  1ZFU A;  1N4N A;  1ZYV A;  1NH5 A;  1ZYW A;  2NY9 X;  2MZ0 A;  2NY8 X;  4AAZ A;  2ATB A;  1ZU3 A;  3PSM A;  5CY0 A;  1TI5 A;  1WT7 A;  1I6G A;  2KYQ A;  1AHO A;  1PE4 A;  1DQ7 A;  1T7A A;  1VNB A;  1C55 A;  1JKZ A;  1T0Z A;  1SNB A;  1GPS A;  1NPI A;  1T7E A;  2N66 A;  1WMT A;  1PTX A;  2KJA A;  2ASC A;  2I61 A;  1BCG A;  2N2R A;  1VNA A;  1CHZ A; 
#chains in the Genus database with same CATH topology
 3FZL A;  2KSK A;  1T1T A;  2QWL A;  4AB0 A;  1NGF A;  2MBK A;  1NGG A;  4H5N A;  1ATS A;  2QW9 A;  2YEO A;  1ZUT A;  2YIL A;  2YBR C;  1BA0 A;  2LR3 A;  3KP0 A;  5KK4 A;  2KBK A;  3ATU A;  2LI7 A;  3KC6 A;  5F0X A;  1K8B A;  1NGD A;  3FZF A;  5AQO A;  3QML A;  5AQZ A;  2GL1 A;  1NGE A;  2LJM A;  2KHO A;  2QWP A;  2VY6 A;  5BPM A;  5F1X A;  1POI A;  2E2F A;  5FPE A;  2QWQ A;  3E7R L;  1NGH A;  3D2E B;  3C7N A;  1NRA A;  2KGQ A;  3CW4 A;  2B3C A;  1AYJ A;  1NGI A;  1KAY A;  2QWN A;  3KOY A;  1CN2 A;  1SEG A;  4H5R A;  1QQN A;  2LKB A;  3KOW A;  1LQQ A;  5FPM A;  1OMY A;  3LDO A;  3LDL A;  1S3X A;  2BUP A;  1ATR A;  1BA1 A;  1QQO A;  3GDQ A;  3KP1 A;  1T7B A;  3QFP A;  3FE1 A;  3KOZ A;  4HHF A;  1DJT A;  1ZVE A;  1NGC A;  5AQI A;  4GNI A;  5EX5 A;  2LJ7 A;  2BRZ A;  4H5V A;  3LDQ A;  4HWI A;  4KBO A;  1B3C A;  1BMR A;  1C56 A;  1JXC A;  2LY5 A;  3LDN A;  5F2R A;  1BRZ A;  1ICA A;  1SN1 A;  2GMO A;  4CQK A;  4UJ0 A;  3LDP A;  5AQM A;  1BK8 A;  5EXW A;  1NGA A;  1ZVG A;  5EY4 A;  1MR4 A;  2LN8 A;  2V7Z A;  4FSV A;  1BUP A;  4H5W A;  5AQN A;  1I2V A;  1JZA A;  3BK3 C;  1P00 A;  1SN4 A;  2E0H A;  2B68 A;  3D2F A;  2K35 A;  1WWN A;  5AR0 A;  1FH3 A;  5BN9 A;  5AQH A;  2E3F A;  2JDQ D;  2N2Q A;  4KYP A;  3GKU A;  1GPT A;  3JXU A;  4HE7 A;  1P0A A;  1PX9 A;  2LT8 A;  1LQI A;  3R2V A;  4AEI A;  1NRB A;  3D2E A;  2KBJ A;  4IO8 A;  5AQV A;  3ATV A;  3E7U X;  1HJO A;  3GL1 A;  1I6F A;  2YC1 C;  2G2K A;  3SF4 D;  2E3G A;  2LY6 A;  1JZB A;  5AQW A;  1I2U A;  1B7D A;  4UAF E;  2D56 A;  3C7N B;  3L6Q A;  1XRS B;  2A7T A;  1LQH A;  1MYN A;  1NE5 A;  3AY9 A;  1KAX A;  5AQP A;  1OZZ A;  5AQX A;  5AQT A;  1L4V A;  2KPY A;  2E88 A;  1NGB A;  2SN3 A;  3CQX A;  3FZK A;  3HSC A;  4UAD E;  5AQY A;  5BPN A;  2KBH A;  5AQS A;  1KAZ A;  1NGJ A;  2M8B B;  4V1D C;  4UAE F;  1UGL A;  5AQU A;  1KV0 A;  5FPD A;  3KOX A;  5AQL A;  3KVG A;  5AQR A;  5AQK A;  2N69 A;  2YIP A;  3IUC A;  2QWM A;  1ZFU A;  3I33 A;  1HPM A;  1N4N A;  1YUW A;  1ZYV A;  1NH5 A;  1ZYW A;  1QQM A;  2NY9 X;  2MZ0 A;  5AQJ A;  2QWO A;  3L4I A;  2NY8 X;  4AAZ A;  2ATB A;  3L56 A;  1ZU3 A;  5AQG A;  3PSM A;  5CY0 A;  1TI5 A;  4FL9 A;  1WT7 A;  1I6G A;  2KYQ A;  3FZH A;  5BN8 A;  2QWR A;  1AHO A;  1PE4 A;  1DQ7 A;  1T7A A;  1VNB A;  3D2F B;  3M3Z A;  4H5T A;  1C55 A;  3KHW A;  5FPN A;  1JKZ A;  1T0Z A;  5BPL A;  1DKG D;  1SNB A;  1GPS A;  1NPI A;  1T7E A;  5EVZ A;  2N66 A;  1WMT A;  1PTX A;  2QXL A;  2E8A A;  3FZM A;  2MN5 A;  2KJA A;  3A8Y A;  5AQQ A;  2ASC A;  3QFU A;  3QI7 A;  2I61 A;  1BCG A;  2N2R A;  1VNA A;  1CHZ A;  1HX1 A;  2YIO A;  5AQF A; 
#chains in the Genus database with same CATH homology
 2KSK A;  1T1T A;  4AB0 A;  2YEO A;  1ZUT A;  2YBR C;  2LR3 A;  5KK4 A;  2KBK A;  2LI7 A;  2GL1 A;  2LJM A;  3E7R L;  1NRA A;  2KGQ A;  2B3C A;  1AYJ A;  1CN2 A;  1SEG A;  2LKB A;  1LQQ A;  1OMY A;  1T7B A;  4HHF A;  1DJT A;  1ZVE A;  2LJ7 A;  2BRZ A;  1B3C A;  1BMR A;  1C56 A;  1JXC A;  2LY5 A;  1BRZ A;  1ICA A;  1SN1 A;  4CQK A;  4UJ0 A;  1BK8 A;  1ZVG A;  1MR4 A;  1I2V A;  1JZA A;  1P00 A;  1SN4 A;  2E0H A;  2B68 A;  1WWN A;  1FH3 A;  2E3F A;  2N2Q A;  4KYP A;  1GPT A;  4HE7 A;  1P0A A;  1PX9 A;  2LT8 A;  1LQI A;  4AEI A;  1NRB A;  2KBJ A;  3E7U X;  1I6F A;  2YC1 C;  2E3G A;  2LY6 A;  1JZB A;  1I2U A;  1B7D A;  2A7T A;  1LQH A;  1MYN A;  1NE5 A;  1L4V A;  1OZZ A;  2KPY A;  2SN3 A;  2KBH A;  2M8B B;  4V1D C;  1KV0 A;  2N69 A;  1ZFU A;  1N4N A;  1ZYV A;  1NH5 A;  1ZYW A;  2NY9 X;  2MZ0 A;  2NY8 X;  4AAZ A;  2ATB A;  1ZU3 A;  3PSM A;  5CY0 A;  1TI5 A;  1WT7 A;  1I6G A;  2KYQ A;  1AHO A;  1PE4 A;  1DQ7 A;  1T7A A;  1VNB A;  1C55 A;  1JKZ A;  1T0Z A;  1SNB A;  1GPS A;  1NPI A;  1T7E A;  2N66 A;  1WMT A;  1PTX A;  2KJA A;  2ASC A;  2I61 A;  1BCG A;  2N2R A;  1VNA A;  1CHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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