5CY0A

Total chemical synthesis, covalent structure verification, and x-ray structure of bioactive ts3 toxin by racemic protein crystallography
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
63
structure length
63
Chain Sequence
KKDGYPVEYDNCAYICWNYDNAYCDKLCKDKKADSGYCYWVHILCYCYGLPDSEPTKTNGKCK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Ts3 Toxin
publication title Elucidation of the Covalent and Tertiary Structures of Biologically Active Ts3 Toxin.
pubmed doi rcsb
total genus 16
structure length 63
sequence length 63
ec nomenclature
pdb deposition date 2015-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 5cy0A00
1NRAA 4AB0A 1JKZA 2B3CA 1PX9A 2LI7A 1P00A 2KPYA 1PE4A 2GL1A 1LQQA 2E3GA 2KJAA 3E7RL 2LJ7A 1LQIA 1BMRA 1DQ7A 1T7BA 1WWNA 4V1DC 2N69A 2N2RA 1AHOA 4UJ0A 1ZVEA 4AAZA 2KBHA 2B68A 2KGQA 2N66A 1C56A 1I2VA 1ZYWA 3PSMA 1NRBA 1JXCA 1JZAA 2E0HA 1GPTA 2A7TA 3E7UX 2KSKA 1I6FA 1NE5A 1CN2A 1LQHA 1NPIA 1ZYVA 4HHFA 1I6GA 1ZUTA 1MR4A 2LT8A 2LY6A 1P0AA 4HE7A 1MYNA 1SN1A 2N2QA 1CHZA 1B3CA 1OMYA 1N4NA 2NY9X 1VNAA 5CY0A 1KV0A 1PTXA 1SN4A 1TI5A 2KBJA 2YBRC 2LKBA 1JZBA 2YC1C 1C55A 2E3FA 4AEIA 2BRZA 2NY8X 2LY5A 1SNBA 1T0ZA 1I2UA 1ZU3A 1VNBA 2LJMA 1WMTA 1WT7A 1B7DA 1ZFUA 1OZZA 1BRZA 1BK8A 1FH3A 1ZVGA 1AYJA 4CQKA 2MZ0A 1T7EA 2KYQA 2SN3A 2YEOA 2I61A 1SEGA 1T1TA 2ATBA 4KYPA 5KK4A 2ASCA 1ICAA 1L4VA 2M8BB 1DJTA 1T7AA 1GPSA 2LR3A 1BCGA 2KBKA 1NH5A
chains in the Genus database with same CATH superfamily
5AQJA 1NRAA 3FZMA 3KC6A 3LDPA 3L6QA 5AQGA 4AB0A 3KOZA 1KAXA 1JKZA 3QMLA 5F0XA 2B3CA 1PX9A 3BK3C 3L4IA 1NGFA 2JDQD 2LI7A 1P00A 5AQSA 2KPYA 1PE4A 2GL1A 3LDOA 1LQQA 2E3GA 2BUPA 2KJAA 3E7RL 2LJ7A 1LQIA 1BMRA 1DQ7A 1BA1A 1BUPA 5AQZA 2K35A 1HX1A 2MBKA 3AY9A 3LDNA 4GNIA 3C7NB 1T7BA 1WWNA 4V1DC 5AQOA 4UADE 2LN8A 2N2RA 1XRSB 2N69A 5BPLA 1AHOA 5BPNA 4UJ0A 1ZVEA 4AAZA 2KBHA 2B68A 4H5TA 2KGQA 3D2FB 2N66A 1C56A 3KHWA 1I2VA 3QFPA 1ZYWA 2QWRA 3PSMA 1NGEA 1NRBA 1JXCA 1JZAA 3KP0A 2E0HA 1S3XA 2A7TA 1NGJA 3E7UX 2KSKA 3C7NA 4UAEF 1GPTA 1I6FA 1NGIA 4H5RA 1NE5A 5AQMA 1ATRA 1LQHA 2E8AA 1NPIA 1ZYVA 1CN2A 3LDLA 3LDQA 3GL1A 4H5VA 4HHFA 1ZUTA 1I6GA 1MR4A 5AQUA 5F2RA 2LT8A 3KOWA 2QXLA 3D2FA 1HPMA 3FZHA 5FPDA 2LY6A 2QWQA 3L56A 3KP1A 4H5NA 1P0AA 4HE7A 5AQNA 1DKGD 1MYNA 2G2KA 1SN1A 2N2QA 1CHZA 2VY6A 1B3CA 2KHOA 1OMYA 5AQVA 1N4NA 1POIA 5BN8A 2GMOA 1BA0A 5F1XA 3QFUA 2NY9X 3KVGA 1QQMA 1VNAA 2D56A 5BPMA 5CY0A 1KV0A 1NGAA 1PTXA 1SN4A 5AQWA 3HSCA 1K8BA 1TI5A 2QWNA 1KAYA 5AQIA 5AQKA 2KBJA 3CW4A 2YBRC 2E2FA 2LKBA 4IO8A 5AQHA 3FZLA 1JZBA 2E88A 2YC1C 1C55A 4UAFE 2E3FA 5FPEA 1NGHA 5BN9A 3ATUA 4AEIA 4HWIA 1ATSA 2BRZA 2YILA 1NGGA 2NY8X 3FE1A 3FZFA 2LY5A 4FSVA 5AQLA 1SNBA 1T0ZA 5AQPA 1I2UA 1ZU3A 1VNBA 2V7ZA 5EY4A 2LJMA 1UGLA 1WMTA 2QW9A 4FL9A 1WT7A 5EXWA 1B7DA 1ZFUA 5AQQA 1OZZA 3ATVA 1BRZA 5EX5A 1BK8A 1QQNA 3SF4D 2QWOA 1FH3A 3KOYA 1NGDA 2QWMA 2QWLA 3D2EB 4H5WA 3A8YA 1ZVGA 3IUCA 3QI7A 5AQYA 2YIOA 1AYJA 4CQKA 2MZ0A 5AQTA 1T7EA 3M3ZA 2KYQA 2SN3A 1QQOA 2QWPA 2YEOA 3FZKA 2MN5A 5AQFA 5FPNA 1NGBA 2I61A 5AR0A 1YUWA 1SEGA 1T1TA 2ATBA 3JXUA 4KYPA 3GKUA 5EVZA 2YIPA 4KBOA 3I33A 5KK4A 2ASCA 3CQXA 3KOXA 3R2VA 3D2EA 5FPMA 1ICAA 1L4VA 1KAZA 2M8BB 1DJTA 1T7AA 1NGCA 3GDQA 5AQXA 5AQRA 1HJOA 1GPSA 2LR3A 1BCGA 2KBKA 1NH5A
chains in the Genus database with same CATH topology
1NRAA 4AB0A 1JKZA 2B3CA 1PX9A 2LI7A 1P00A 2KPYA 1PE4A 2GL1A 1LQQA 2E3GA 2KJAA 3E7RL 2LJ7A 1LQIA 1BMRA 1DQ7A 1T7BA 1WWNA 4V1DC 2N69A 2N2RA 1AHOA 4UJ0A 1ZVEA 4AAZA 2KBHA 2B68A 2KGQA 2N66A 1C56A 1I2VA 1ZYWA 3PSMA 1NRBA 1JXCA 1JZAA 2E0HA 1GPTA 2A7TA 3E7UX 2KSKA 1I6FA 1NE5A 1CN2A 1LQHA 1NPIA 1ZYVA 4HHFA 1I6GA 1ZUTA 1MR4A 2LT8A 2LY6A 1P0AA 4HE7A 1MYNA 1SN1A 2N2QA 1CHZA 1B3CA 1OMYA 1N4NA 2NY9X 1VNAA 5CY0A 1KV0A 1PTXA 1SN4A 1TI5A 2KBJA 2YBRC 2LKBA 1JZBA 2YC1C 1C55A 2E3FA 4AEIA 2BRZA 2NY8X 2LY5A 1SNBA 1T0ZA 1I2UA 1ZU3A 1VNBA 2LJMA 1WMTA 1WT7A 1B7DA 1ZFUA 1OZZA 1BRZA 1BK8A 1FH3A 1ZVGA 1AYJA 4CQKA 2MZ0A 1T7EA 2KYQA 2SN3A 2YEOA 2I61A 1SEGA 1T1TA 2ATBA 4KYPA 5KK4A 2ASCA 1ICAA 1L4VA 2M8BB 1DJTA 1T7AA 1GPSA 2LR3A 1BCGA 2KBKA 1NH5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NRA A;  4AB0 A;  1JKZ A;  2B3C A;  1PX9 A;  2LI7 A;  1P00 A;  2KPY A;  1PE4 A;  2GL1 A;  1LQQ A;  2E3G A;  2KJA A;  3E7R L;  2LJ7 A;  1LQI A;  1BMR A;  1DQ7 A;  1T7B A;  1WWN A;  4V1D C;  2N69 A;  2N2R A;  1AHO A;  4UJ0 A;  1ZVE A;  4AAZ A;  2KBH A;  2B68 A;  2KGQ A;  2N66 A;  1C56 A;  1I2V A;  1ZYW A;  3PSM A;  1NRB A;  1JXC A;  1JZA A;  2E0H A;  1GPT A;  2A7T A;  3E7U X;  2KSK A;  1I6F A;  1NE5 A;  1CN2 A;  1LQH A;  1NPI A;  1ZYV A;  4HHF A;  1I6G A;  1ZUT A;  1MR4 A;  2LT8 A;  2LY6 A;  1P0A A;  4HE7 A;  1MYN A;  1SN1 A;  2N2Q A;  1CHZ A;  1B3C A;  1OMY A;  1N4N A;  2NY9 X;  1VNA A;  5CY0 A;  1KV0 A;  1PTX A;  1SN4 A;  1TI5 A;  2KBJ A;  2YBR C;  2LKB A;  1JZB A;  2YC1 C;  1C55 A;  2E3F A;  4AEI A;  2BRZ A;  2NY8 X;  2LY5 A;  1SNB A;  1T0Z A;  1I2U A;  1ZU3 A;  1VNB A;  2LJM A;  1WMT A;  1WT7 A;  1B7D A;  1ZFU A;  1OZZ A;  1BRZ A;  1BK8 A;  1FH3 A;  1ZVG A;  1AYJ A;  4CQK A;  2MZ0 A;  1T7E A;  2KYQ A;  2SN3 A;  2YEO A;  2I61 A;  1SEG A;  1T1T A;  2ATB A;  4KYP A;  5KK4 A;  2ASC A;  1ICA A;  1L4V A;  2M8B B;  1DJT A;  1T7A A;  1GPS A;  2LR3 A;  1BCG A;  2KBK A;  1NH5 A; 
#chains in the Genus database with same CATH topology
 5AQJ A;  1NRA A;  3FZM A;  3KC6 A;  3LDP A;  3L6Q A;  5AQG A;  4AB0 A;  3KOZ A;  1KAX A;  1JKZ A;  3QML A;  5F0X A;  2B3C A;  1PX9 A;  3BK3 C;  3L4I A;  1NGF A;  2JDQ D;  2LI7 A;  1P00 A;  5AQS A;  2KPY A;  1PE4 A;  2GL1 A;  3LDO A;  1LQQ A;  2E3G A;  2BUP A;  2KJA A;  3E7R L;  2LJ7 A;  1LQI A;  1BMR A;  1DQ7 A;  1BA1 A;  1BUP A;  5AQZ A;  2K35 A;  1HX1 A;  2MBK A;  3AY9 A;  3LDN A;  4GNI A;  3C7N B;  1T7B A;  1WWN A;  4V1D C;  5AQO A;  4UAD E;  2LN8 A;  2N2R A;  1XRS B;  2N69 A;  5BPL A;  1AHO A;  5BPN A;  4UJ0 A;  1ZVE A;  4AAZ A;  2KBH A;  2B68 A;  4H5T A;  2KGQ A;  3D2F B;  2N66 A;  1C56 A;  3KHW A;  1I2V A;  3QFP A;  1ZYW A;  2QWR A;  3PSM A;  1NGE A;  1NRB A;  1JXC A;  1JZA A;  3KP0 A;  2E0H A;  1S3X A;  2A7T A;  1NGJ A;  3E7U X;  2KSK A;  3C7N A;  4UAE F;  1GPT A;  1I6F A;  1NGI A;  4H5R A;  1NE5 A;  5AQM A;  1ATR A;  1LQH A;  2E8A A;  1NPI A;  1ZYV A;  1CN2 A;  3LDL A;  3LDQ A;  3GL1 A;  4H5V A;  4HHF A;  1ZUT A;  1I6G A;  1MR4 A;  5AQU A;  5F2R A;  2LT8 A;  3KOW A;  2QXL A;  3D2F A;  1HPM A;  3FZH A;  5FPD A;  2LY6 A;  2QWQ A;  3L56 A;  3KP1 A;  4H5N A;  1P0A A;  4HE7 A;  5AQN A;  1DKG D;  1MYN A;  2G2K A;  1SN1 A;  2N2Q A;  1CHZ A;  2VY6 A;  1B3C A;  2KHO A;  1OMY A;  5AQV A;  1N4N A;  1POI A;  5BN8 A;  2GMO A;  1BA0 A;  5F1X A;  3QFU A;  2NY9 X;  3KVG A;  1QQM A;  1VNA A;  2D56 A;  5BPM A;  5CY0 A;  1KV0 A;  1NGA A;  1PTX A;  1SN4 A;  5AQW A;  3HSC A;  1K8B A;  1TI5 A;  2QWN A;  1KAY A;  5AQI A;  5AQK A;  2KBJ A;  3CW4 A;  2YBR C;  2E2F A;  2LKB A;  4IO8 A;  5AQH A;  3FZL A;  1JZB A;  2E88 A;  2YC1 C;  1C55 A;  4UAF E;  2E3F A;  5FPE A;  1NGH A;  5BN9 A;  3ATU A;  4AEI A;  4HWI A;  1ATS A;  2BRZ A;  2YIL A;  1NGG A;  2NY8 X;  3FE1 A;  3FZF A;  2LY5 A;  4FSV A;  5AQL A;  1SNB A;  1T0Z A;  5AQP A;  1I2U A;  1ZU3 A;  1VNB A;  2V7Z A;  5EY4 A;  2LJM A;  1UGL A;  1WMT A;  2QW9 A;  4FL9 A;  1WT7 A;  5EXW A;  1B7D A;  1ZFU A;  5AQQ A;  1OZZ A;  3ATV A;  1BRZ A;  5EX5 A;  1BK8 A;  1QQN A;  3SF4 D;  2QWO A;  1FH3 A;  3KOY A;  1NGD A;  2QWM A;  2QWL A;  3D2E B;  4H5W A;  3A8Y A;  1ZVG A;  3IUC A;  3QI7 A;  5AQY A;  2YIO A;  1AYJ A;  4CQK A;  2MZ0 A;  5AQT A;  1T7E A;  3M3Z A;  2KYQ A;  2SN3 A;  1QQO A;  2QWP A;  2YEO A;  3FZK A;  2MN5 A;  5AQF A;  5FPN A;  1NGB A;  2I61 A;  5AR0 A;  1YUW A;  1SEG A;  1T1T A;  2ATB A;  3JXU A;  4KYP A;  3GKU A;  5EVZ A;  2YIP A;  4KBO A;  3I33 A;  5KK4 A;  2ASC A;  3CQX A;  3KOX A;  3R2V A;  3D2E A;  5FPM A;  1ICA A;  1L4V A;  1KAZ A;  2M8B B;  1DJT A;  1T7A A;  1NGC A;  3GDQ A;  5AQX A;  5AQR A;  1HJO A;  1GPS A;  2LR3 A;  1BCG A;  2KBK A;  1NH5 A; 
#chains in the Genus database with same CATH homology
 1NRA A;  4AB0 A;  1JKZ A;  2B3C A;  1PX9 A;  2LI7 A;  1P00 A;  2KPY A;  1PE4 A;  2GL1 A;  1LQQ A;  2E3G A;  2KJA A;  3E7R L;  2LJ7 A;  1LQI A;  1BMR A;  1DQ7 A;  1T7B A;  1WWN A;  4V1D C;  2N69 A;  2N2R A;  1AHO A;  4UJ0 A;  1ZVE A;  4AAZ A;  2KBH A;  2B68 A;  2KGQ A;  2N66 A;  1C56 A;  1I2V A;  1ZYW A;  3PSM A;  1NRB A;  1JXC A;  1JZA A;  2E0H A;  1GPT A;  2A7T A;  3E7U X;  2KSK A;  1I6F A;  1NE5 A;  1CN2 A;  1LQH A;  1NPI A;  1ZYV A;  4HHF A;  1I6G A;  1ZUT A;  1MR4 A;  2LT8 A;  2LY6 A;  1P0A A;  4HE7 A;  1MYN A;  1SN1 A;  2N2Q A;  1CHZ A;  1B3C A;  1OMY A;  1N4N A;  2NY9 X;  1VNA A;  5CY0 A;  1KV0 A;  1PTX A;  1SN4 A;  1TI5 A;  2KBJ A;  2YBR C;  2LKB A;  1JZB A;  2YC1 C;  1C55 A;  2E3F A;  4AEI A;  2BRZ A;  2NY8 X;  2LY5 A;  1SNB A;  1T0Z A;  1I2U A;  1ZU3 A;  1VNB A;  2LJM A;  1WMT A;  1WT7 A;  1B7D A;  1ZFU A;  1OZZ A;  1BRZ A;  1BK8 A;  1FH3 A;  1ZVG A;  1AYJ A;  4CQK A;  2MZ0 A;  1T7E A;  2KYQ A;  2SN3 A;  2YEO A;  2I61 A;  1SEG A;  1T1T A;  2ATB A;  4KYP A;  5KK4 A;  2ASC A;  1ICA A;  1L4V A;  2M8B B;  1DJT A;  1T7A A;  1GPS A;  2LR3 A;  1BCG A;  2KBK A;  1NH5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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