1JZBA

Crystal structure of variant 2 scorpion toxin from centruroides sculpturatus ewing
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
66
structure length
66
Chain Sequence
KEGYLVNKSTGCKYGCLKLGENEGCDKECKAKNQGGSYGYCYAFACWCEGLPESTPTYPLPNKSCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of variant 2 scorpion toxin from Centruroides sculpturatus Ewing.
pubmed doi rcsb
molecule tags Toxin
molecule keywords NEUROTOXIN 2
total genus 12
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2001-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1jzbA00
1BK8A 1N4NA 1NRAA 4HE7A 2ATBA 1OMYA 2YBRC 1SNBA 1JXCA 1B7DA 1WT7A 4AAZA 1CHZA 1PX9A 1DQ7A 1SN4A 2KSKA 2N69A 1P0AA 1MYNA 2B3CA 1SN1A 1C56A 2BRZA 4HHFA 1ZUTA 2KBJA 1DJTA 1AHOA 1P00A 1FH3A 4KYPA 1I2UA 2ASCA 1T7BA 2LJ7A 1NH5A 2B68A 1T1TA 1TI5A 1ZVEA 1C55A 2E3GA 2E3FA 1WMTA 1T7AA 1BMRA 3PSMA 2KBKA 2LJMA 1ZVGA 1BRZA 1L4VA 1ZU3A 1ZYWA 4V1DC 2LT8A 1JKZA 3E7RL 2LY6A 1NRBA 1T7EA 5CY0A 1WWNA 2E0HA 2YEOA 2MZ0A 2A7TA 1B3CA 1NPIA 5KK4A 1PTXA 1I6FA 2N2QA 2NY8X 1LQIA 1SEGA 2NY9X 4CQKA 2KPYA 1GPTA 1NE5A 2KYQA 2GL1A 2KJAA 2LKBA 1ICAA 2LR3A 1GPSA 2LY5A 1PE4A 1VNBA 2N2RA 1JZAA 3E7UX 1KV0A 4AB0A 1CN2A 1ZFUA 2LI7A 1OZZA 2KGQA 1JZBA 4AEIA 1LQHA 1MR4A 2SN3A 1VNAA 1ZYVA 1LQQA 2M8BB 2YC1C 1I2VA 1AYJA 1T0ZA 1BCGA 2N66A 2KBHA 2I61A 4UJ0A 1I6GA
chains in the Genus database with same CATH superfamily
3KOYA 2E8AA 1BK8A 1HJOA 1N4NA 2MN5A 1NRAA 2QW9A 4HE7A 3KP1A 3AY9A 2ATBA 3KC6A 1OMYA 2YBRC 1SNBA 1JXCA 1B7DA 4H5RA 1KAXA 1NGFA 1WT7A 5AQPA 4AAZA 1CHZA 3I33A 3FZMA 1PX9A 1DQ7A 3FZKA 5FPNA 5BPLA 1SN4A 2KSKA 2N69A 1KAYA 3L6QA 5AQLA 3SF4D 3FZFA 3L56A 2QWOA 3QFUA 3LDPA 2BUPA 1P0AA 5AQQA 1GPSA 1MYNA 5AQYA 1XRSB 2B3CA 1SN1A 4GNIA 5F1XA 1C56A 1ATSA 1NGBA 2BRZA 1DKGD 1ZUTA 4HHFA 2KBJA 3FZHA 5AQMA 2G2KA 5BPNA 3GDQA 1NGCA 1DJTA 2D56A 2QWLA 1HPMA 3CW4A 1AHOA 1P00A 3C7NB 1BUPA 1FH3A 4KYPA 1I2UA 2ASCA 1QQNA 1T7BA 1NH5A 2LJ7A 2B68A 3LDLA 1T1TA 1TI5A 1ZVEA 2YIOA 3JXUA 3QMLA 4H5VA 1C55A 2KHOA 2E3GA 3CQXA 2E3FA 5BPMA 1WMTA 5AQHA 1T7AA 1BMRA 3PSMA 5EX5A 3D2EB 2YILA 2KBKA 3KHWA 4UADE 1NGJA 1ZVGA 2LJMA 5AQOA 4H5NA 1BRZA 3C7NA 3D2FB 1L4VA 1ZU3A 1ZYWA 3GL1A 2QXLA 4V1DC 2LT8A 1JKZA 5AQNA 3E7RL 2LY6A 1NRBA 1T7EA 1UGLA 1WWNA 2E0HA 2QWNA 3M3ZA 5AQRA 5CY0A 2YEOA 1NGDA 2MZ0A 3IUCA 3HSCA 2A7TA 1B3CA 4UAFE 1NPIA 2MBKA 5AQTA 3QFPA 1PTXA 5AQVA 3GKUA 4UAEF 5KK4A 2E88A 4HWIA 1I6FA 2E2FA 2JDQD 3KVGA 2N2QA 3LDNA 2QWQA 2NY8X 1LQIA 3ATVA 3LDQA 1SEGA 5FPEA 1QQMA 2NY9X 4CQKA 4IO8A 2KPYA 1NGEA 3KP0A 5FPMA 1GPTA 4H5TA 1NE5A 2KYQA 2GL1A 1NGGA 2KJAA 1NGIA 2LKBA 2LN8A 3A8YA 5AR0A 2LR3A 5EXWA 1ICAA 1KAZA 2QWRA 3KOZA 3KOWA 2LY5A 1YUWA 5AQFA 5BN9A 1BA1A 5F0XA 1PE4A 1VNBA 2GMOA 2N2RA 3QI7A 5FPDA 2QWMA 1POIA 1JZAA 3L4IA 3E7UX 5BN8A 1NGHA 1KV0A 3FE1A 5AQGA 3LDOA 4AB0A 1CN2A 1ZFUA 2LI7A 1OZZA 4FSVA 2KGQA 4KBOA 4H5WA 3D2EA 1JZBA 4AEIA 1LQHA 1ATRA 1MR4A 5AQIA 2SN3A 3D2FA 5AQXA 1VNAA 1ZYVA 3BK3C 5AQUA 5EY4A 1LQQA 2M8BB 2YC1C 5AQJA 5AQSA 3ATUA 1HX1A 1I2VA 1K8BA 1AYJA 3FZLA 1S3XA 1T0ZA 5AQKA 1BCGA 2N66A 2QWPA 2KBHA 1NGAA 2VY6A 4FL9A 5AQZA 5F2RA 2V7ZA 2YIPA 2I61A 2K35A 1BA0A 3R2VA 3KOXA 4UJ0A 5EVZA 1I6GA 1QQOA 5AQWA
chains in the Genus database with same CATH topology
1BK8A 1N4NA 1NRAA 4HE7A 2ATBA 1OMYA 2YBRC 1SNBA 1JXCA 1B7DA 1WT7A 4AAZA 1CHZA 1PX9A 1DQ7A 1SN4A 2KSKA 2N69A 1P0AA 1MYNA 2B3CA 1SN1A 1C56A 2BRZA 4HHFA 1ZUTA 2KBJA 1DJTA 1AHOA 1P00A 1FH3A 4KYPA 1I2UA 2ASCA 1T7BA 2LJ7A 1NH5A 2B68A 1T1TA 1TI5A 1ZVEA 1C55A 2E3GA 2E3FA 1WMTA 1T7AA 1BMRA 3PSMA 2KBKA 2LJMA 1ZVGA 1BRZA 1L4VA 1ZU3A 1ZYWA 4V1DC 2LT8A 1JKZA 3E7RL 2LY6A 1NRBA 1T7EA 5CY0A 1WWNA 2E0HA 2YEOA 2MZ0A 2A7TA 1B3CA 1NPIA 5KK4A 1PTXA 1I6FA 2N2QA 2NY8X 1LQIA 1SEGA 2NY9X 4CQKA 2KPYA 1GPTA 1NE5A 2KYQA 2GL1A 2KJAA 2LKBA 1ICAA 2LR3A 1GPSA 2LY5A 1PE4A 1VNBA 2N2RA 1JZAA 3E7UX 1KV0A 4AB0A 1CN2A 1ZFUA 2LI7A 1OZZA 2KGQA 1JZBA 4AEIA 1LQHA 1MR4A 2SN3A 1VNAA 1ZYVA 1LQQA 2M8BB 2YC1C 1I2VA 1AYJA 1T0ZA 1BCGA 2N66A 2KBHA 2I61A 4UJ0A 1I6GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BK8 A;  1N4N A;  1NRA A;  4HE7 A;  2ATB A;  1OMY A;  2YBR C;  1SNB A;  1JXC A;  1B7D A;  1WT7 A;  4AAZ A;  1CHZ A;  1PX9 A;  1DQ7 A;  1SN4 A;  2KSK A;  2N69 A;  1P0A A;  1MYN A;  2B3C A;  1SN1 A;  1C56 A;  2BRZ A;  4HHF A;  1ZUT A;  2KBJ A;  1DJT A;  1AHO A;  1P00 A;  1FH3 A;  4KYP A;  1I2U A;  2ASC A;  1T7B A;  2LJ7 A;  1NH5 A;  2B68 A;  1T1T A;  1TI5 A;  1ZVE A;  1C55 A;  2E3G A;  2E3F A;  1WMT A;  1T7A A;  1BMR A;  3PSM A;  2KBK A;  2LJM A;  1ZVG A;  1BRZ A;  1L4V A;  1ZU3 A;  1ZYW A;  4V1D C;  2LT8 A;  1JKZ A;  3E7R L;  2LY6 A;  1NRB A;  1T7E A;  5CY0 A;  1WWN A;  2E0H A;  2YEO A;  2MZ0 A;  2A7T A;  1B3C A;  1NPI A;  5KK4 A;  1PTX A;  1I6F A;  2N2Q A;  2NY8 X;  1LQI A;  1SEG A;  2NY9 X;  4CQK A;  2KPY A;  1GPT A;  1NE5 A;  2KYQ A;  2GL1 A;  2KJA A;  2LKB A;  1ICA A;  2LR3 A;  1GPS A;  2LY5 A;  1PE4 A;  1VNB A;  2N2R A;  1JZA A;  3E7U X;  1KV0 A;  4AB0 A;  1CN2 A;  1ZFU A;  2LI7 A;  1OZZ A;  2KGQ A;  1JZB A;  4AEI A;  1LQH A;  1MR4 A;  2SN3 A;  1VNA A;  1ZYV A;  1LQQ A;  2M8B B;  2YC1 C;  1I2V A;  1AYJ A;  1T0Z A;  1BCG A;  2N66 A;  2KBH A;  2I61 A;  4UJ0 A;  1I6G A; 
#chains in the Genus database with same CATH topology
 3KOY A;  2E8A A;  1BK8 A;  1HJO A;  1N4N A;  2MN5 A;  1NRA A;  2QW9 A;  4HE7 A;  3KP1 A;  3AY9 A;  2ATB A;  3KC6 A;  1OMY A;  2YBR C;  1SNB A;  1JXC A;  1B7D A;  4H5R A;  1KAX A;  1NGF A;  1WT7 A;  5AQP A;  4AAZ A;  1CHZ A;  3I33 A;  3FZM A;  1PX9 A;  1DQ7 A;  3FZK A;  5FPN A;  5BPL A;  1SN4 A;  2KSK A;  2N69 A;  1KAY A;  3L6Q A;  5AQL A;  3SF4 D;  3FZF A;  3L56 A;  2QWO A;  3QFU A;  3LDP A;  2BUP A;  1P0A A;  5AQQ A;  1GPS A;  1MYN A;  5AQY A;  1XRS B;  2B3C A;  1SN1 A;  4GNI A;  5F1X A;  1C56 A;  1ATS A;  1NGB A;  2BRZ A;  1DKG D;  1ZUT A;  4HHF A;  2KBJ A;  3FZH A;  5AQM A;  2G2K A;  5BPN A;  3GDQ A;  1NGC A;  1DJT A;  2D56 A;  2QWL A;  1HPM A;  3CW4 A;  1AHO A;  1P00 A;  3C7N B;  1BUP A;  1FH3 A;  4KYP A;  1I2U A;  2ASC A;  1QQN A;  1T7B A;  1NH5 A;  2LJ7 A;  2B68 A;  3LDL A;  1T1T A;  1TI5 A;  1ZVE A;  2YIO A;  3JXU A;  3QML A;  4H5V A;  1C55 A;  2KHO A;  2E3G A;  3CQX A;  2E3F A;  5BPM A;  1WMT A;  5AQH A;  1T7A A;  1BMR A;  3PSM A;  5EX5 A;  3D2E B;  2YIL A;  2KBK A;  3KHW A;  4UAD E;  1NGJ A;  1ZVG A;  2LJM A;  5AQO A;  4H5N A;  1BRZ A;  3C7N A;  3D2F B;  1L4V A;  1ZU3 A;  1ZYW A;  3GL1 A;  2QXL A;  4V1D C;  2LT8 A;  1JKZ A;  5AQN A;  3E7R L;  2LY6 A;  1NRB A;  1T7E A;  1UGL A;  1WWN A;  2E0H A;  2QWN A;  3M3Z A;  5AQR A;  5CY0 A;  2YEO A;  1NGD A;  2MZ0 A;  3IUC A;  3HSC A;  2A7T A;  1B3C A;  4UAF E;  1NPI A;  2MBK A;  5AQT A;  3QFP A;  1PTX A;  5AQV A;  3GKU A;  4UAE F;  5KK4 A;  2E88 A;  4HWI A;  1I6F A;  2E2F A;  2JDQ D;  3KVG A;  2N2Q A;  3LDN A;  2QWQ A;  2NY8 X;  1LQI A;  3ATV A;  3LDQ A;  1SEG A;  5FPE A;  1QQM A;  2NY9 X;  4CQK A;  4IO8 A;  2KPY A;  1NGE A;  3KP0 A;  5FPM A;  1GPT A;  4H5T A;  1NE5 A;  2KYQ A;  2GL1 A;  1NGG A;  2KJA A;  1NGI A;  2LKB A;  2LN8 A;  3A8Y A;  5AR0 A;  2LR3 A;  5EXW A;  1ICA A;  1KAZ A;  2QWR A;  3KOZ A;  3KOW A;  2LY5 A;  1YUW A;  5AQF A;  5BN9 A;  1BA1 A;  5F0X A;  1PE4 A;  1VNB A;  2GMO A;  2N2R A;  3QI7 A;  5FPD A;  2QWM A;  1POI A;  1JZA A;  3L4I A;  3E7U X;  5BN8 A;  1NGH A;  1KV0 A;  3FE1 A;  5AQG A;  3LDO A;  4AB0 A;  1CN2 A;  1ZFU A;  2LI7 A;  1OZZ A;  4FSV A;  2KGQ A;  4KBO A;  4H5W A;  3D2E A;  1JZB A;  4AEI A;  1LQH A;  1ATR A;  1MR4 A;  5AQI A;  2SN3 A;  3D2F A;  5AQX A;  1VNA A;  1ZYV A;  3BK3 C;  5AQU A;  5EY4 A;  1LQQ A;  2M8B B;  2YC1 C;  5AQJ A;  5AQS A;  3ATU A;  1HX1 A;  1I2V A;  1K8B A;  1AYJ A;  3FZL A;  1S3X A;  1T0Z A;  5AQK A;  1BCG A;  2N66 A;  2QWP A;  2KBH A;  1NGA A;  2VY6 A;  4FL9 A;  5AQZ A;  5F2R A;  2V7Z A;  2YIP A;  2I61 A;  2K35 A;  1BA0 A;  3R2V A;  3KOX A;  4UJ0 A;  5EVZ A;  1I6G A;  1QQO A;  5AQW A; 
#chains in the Genus database with same CATH homology
 1BK8 A;  1N4N A;  1NRA A;  4HE7 A;  2ATB A;  1OMY A;  2YBR C;  1SNB A;  1JXC A;  1B7D A;  1WT7 A;  4AAZ A;  1CHZ A;  1PX9 A;  1DQ7 A;  1SN4 A;  2KSK A;  2N69 A;  1P0A A;  1MYN A;  2B3C A;  1SN1 A;  1C56 A;  2BRZ A;  4HHF A;  1ZUT A;  2KBJ A;  1DJT A;  1AHO A;  1P00 A;  1FH3 A;  4KYP A;  1I2U A;  2ASC A;  1T7B A;  2LJ7 A;  1NH5 A;  2B68 A;  1T1T A;  1TI5 A;  1ZVE A;  1C55 A;  2E3G A;  2E3F A;  1WMT A;  1T7A A;  1BMR A;  3PSM A;  2KBK A;  2LJM A;  1ZVG A;  1BRZ A;  1L4V A;  1ZU3 A;  1ZYW A;  4V1D C;  2LT8 A;  1JKZ A;  3E7R L;  2LY6 A;  1NRB A;  1T7E A;  5CY0 A;  1WWN A;  2E0H A;  2YEO A;  2MZ0 A;  2A7T A;  1B3C A;  1NPI A;  5KK4 A;  1PTX A;  1I6F A;  2N2Q A;  2NY8 X;  1LQI A;  1SEG A;  2NY9 X;  4CQK A;  2KPY A;  1GPT A;  1NE5 A;  2KYQ A;  2GL1 A;  2KJA A;  2LKB A;  1ICA A;  2LR3 A;  1GPS A;  2LY5 A;  1PE4 A;  1VNB A;  2N2R A;  1JZA A;  3E7U X;  1KV0 A;  4AB0 A;  1CN2 A;  1ZFU A;  2LI7 A;  1OZZ A;  2KGQ A;  1JZB A;  4AEI A;  1LQH A;  1MR4 A;  2SN3 A;  1VNA A;  1ZYV A;  1LQQ A;  2M8B B;  2YC1 C;  1I2V A;  1AYJ A;  1T0Z A;  1BCG A;  2N66 A;  2KBH A;  2I61 A;  4UJ0 A;  1I6G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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