1DQ7A

Three-dimensional structure of a neurotoxin from red scorpion (buthus tamulus) at 2.2a resolution.
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
64
structure length
64
Chain Sequence
GEDGYIADGDNCTYICTFNNYCHALCTDKKGDSGACDWWVPYGVVCWCEDLPTPVPIRGSGKCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional Structure of a Neurotoxin from Red Scorpion (Buthus tamulus) at 2.2A Resolution
rcsb
molecule tags Toxin
molecule keywords NEUROTOXIN
total genus 15
structure length 64
sequence length 64
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1dq7A00
1GPSA 4V1DC 1VNBA 2NY8X 1L4VA 1C56A 1AHOA 1BMRA 2YBRC 1PTXA 1PE4A 2N69A 2KGQA 1LQIA 1KV0A 4AAZA 2KBHA 4AB0A 2N2QA 2LR3A 2KPYA 2MZ0A 1MYNA 1CHZA 3E7RL 1VNAA 1JZAA 1CN2A 1LQQA 1T0ZA 1T7BA 1N4NA 1NRAA 1SNBA 2N2RA 2E3GA 2LJ7A 1P00A 1C55A 1BK8A 4CQKA 1AYJA 4KYPA 1SEGA 1I6GA 2NY9X 1WT7A 4UJ0A 2KBKA 2ATBA 1NH5A 2M8BB 1SN1A 1SN4A 2KJAA 1I2VA 1B7DA 1ZUTA 2YC1C 4HE7A 2KYQA 1TI5A 1BRZA 1DJTA 1NE5A 1WMTA 1ICAA 2KBJA 5CY0A 2LI7A 4AEIA 1JKZA 1NRBA 2YEOA 1B3CA 1LQHA 1JZBA 2LY5A 2GL1A 1GPTA 2LJMA 1JXCA 1OZZA 1NPIA 1T1TA 1MR4A 1PX9A 2I61A 2B3CA 2SN3A 5KK4A 1FH3A 4HHFA 1I2UA 1ZFUA 1I6FA 2BRZA 2KSKA 1ZYWA 1P0AA 2LKBA 2N66A 1WWNA 1DQ7A 2E0HA 1T7EA 1ZU3A 2LY6A 1BCGA 2B68A 1ZVEA 1ZYVA 2A7TA 2E3FA 1ZVGA 1OMYA 3PSMA 1T7AA 3E7UX 2LT8A 2ASCA
chains in the Genus database with same CATH superfamily
1GPSA 4V1DC 2G2KA 3LDPA 4HWIA 3KOXA 5AQPA 3D2EB 5F2RA 3A8YA 1VNBA 2NY8X 1L4VA 3AY9A 5FPEA 4UAFE 3ATUA 1DKGD 1C56A 2MBKA 2QWQA 2E2FA 5AR0A 2E88A 1AHOA 1BMRA 5AQWA 5FPNA 2YBRC 3QMLA 5AQYA 1NGJA 3KVGA 1PTXA 1K8BA 1PE4A 1BA1A 2N69A 1LQIA 2KGQA 1KV0A 2D56A 3KOWA 1HJOA 2KBHA 3FZMA 2N2QA 2LR3A 1KAYA 4H5TA 4AB0A 4AAZA 2KPYA 2QXLA 2QWMA 5AQTA 2MZ0A 1MYNA 2QWLA 4KBOA 1CHZA 3E7RL 2VY6A 1VNAA 1JZAA 5AQUA 1CN2A 1NGEA 1LQQA 5AQQA 1T0ZA 1T7BA 1N4NA 1NRAA 1SNBA 3QFPA 5BN8A 5AQMA 1NGFA 1KAZA 2E3GA 2N2RA 5AQOA 1XRSB 2QWOA 2LJ7A 5AQHA 1P00A 4GNIA 1C55A 1NGIA 1BK8A 5AQLA 4CQKA 3IUCA 1AYJA 3GL1A 4KYPA 3I33A 2QW9A 2K35A 3C7NA 4UADE 1SEGA 5AQRA 2LN8A 5EX5A 2NY9X 1I6GA 1WT7A 4UJ0A 2KBKA 1BUPA 4H5RA 2ATBA 4FSVA 5AQNA 1NH5A 3QI7A 2M8BB 1SN1A 3D2EA 1QQNA 3LDNA 1SN4A 3BK3C 3HSCA 2KJAA 3FZFA 4H5NA 1I2VA 1B7DA 1ZUTA 2YC1C 2QWRA 3KP0A 2E8AA 4HE7A 1NGDA 2KYQA 3KC6A 1TI5A 1BRZA 3CQXA 1DJTA 1NE5A 2MN5A 5FPDA 1WMTA 1NGGA 5AQIA 4H5VA 5BPLA 2KBJA 5CY0A 2LI7A 4AEIA 1JKZA 1NRBA 2YEOA 3FZKA 4UAEF 3D2FA 3SF4D 1B3CA 1LQHA 1JZBA 2LY5A 2V7ZA 2GL1A 1GPTA 3R2VA 1NGCA 2GMOA 2LJMA 1KAXA 5F1XA 1JXCA 3FZLA 5AQVA 1OZZA 1NPIA 3M3ZA 5AQFA 1T1TA 5F0XA 3LDLA 1MR4A 1PX9A 2I61A 3LDQA 2B3CA 1HX1A 2SN3A 3CW4A 5KK4A 1FH3A 5AQXA 1YUWA 4HHFA 3ATVA 5AQSA 1I2UA 5EVZA 3C7NB 2QWPA 1ZFUA 1I6FA 2BRZA 5AQGA 1S3XA 2JDQD 3L6QA 2KSKA 2QWNA 1UGLA 5FPMA 1ZYWA 3LDOA 2YIPA 3KP1A 1P0AA 5BN9A 3GDQA 1NGAA 2LKBA 5AQJA 2N66A 1WWNA 4H5WA 1POIA 3FE1A 5BPNA 3KOYA 1DQ7A 2E0HA 3KOZA 1T7EA 3JXUA 5EXWA 1ATRA 2YILA 1NGBA 1QQMA 5AQZA 4FL9A 1ICAA 1ZU3A 2LY6A 1BCGA 2B68A 1ZVEA 5BPMA 1ZYVA 1QQOA 2A7TA 2E3FA 3FZHA 4IO8A 5EY4A 3D2FB 1NGHA 2KHOA 3QFUA 2BUPA 3GKUA 3KHWA 2YIOA 1ZVGA 1OMYA 1HPMA 1ATSA 3L4IA 3PSMA 1T7AA 3E7UX 3L56A 2LT8A 1BA0A 2ASCA 5AQKA
chains in the Genus database with same CATH topology
1GPSA 4V1DC 1VNBA 2NY8X 1L4VA 1C56A 1AHOA 1BMRA 2YBRC 1PTXA 1PE4A 2N69A 2KGQA 1LQIA 1KV0A 4AAZA 2KBHA 4AB0A 2N2QA 2LR3A 2KPYA 2MZ0A 1MYNA 1CHZA 3E7RL 1VNAA 1JZAA 1CN2A 1LQQA 1T0ZA 1T7BA 1N4NA 1NRAA 1SNBA 2N2RA 2E3GA 2LJ7A 1P00A 1C55A 1BK8A 4CQKA 1AYJA 4KYPA 1SEGA 1I6GA 2NY9X 1WT7A 4UJ0A 2KBKA 2ATBA 1NH5A 2M8BB 1SN1A 1SN4A 2KJAA 1I2VA 1B7DA 1ZUTA 2YC1C 4HE7A 2KYQA 1TI5A 1BRZA 1DJTA 1NE5A 1WMTA 1ICAA 2KBJA 5CY0A 2LI7A 4AEIA 1JKZA 1NRBA 2YEOA 1B3CA 1LQHA 1JZBA 2LY5A 2GL1A 1GPTA 2LJMA 1JXCA 1OZZA 1NPIA 1T1TA 1MR4A 1PX9A 2I61A 2B3CA 2SN3A 5KK4A 1FH3A 4HHFA 1I2UA 1ZFUA 1I6FA 2BRZA 2KSKA 1ZYWA 1P0AA 2LKBA 2N66A 1WWNA 1DQ7A 2E0HA 1T7EA 1ZU3A 2LY6A 1BCGA 2B68A 1ZVEA 1ZYVA 2A7TA 2E3FA 1ZVGA 1OMYA 3PSMA 1T7AA 3E7UX 2LT8A 2ASCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPS A;  4V1D C;  1VNB A;  2NY8 X;  1L4V A;  1C56 A;  1AHO A;  1BMR A;  2YBR C;  1PTX A;  1PE4 A;  2N69 A;  2KGQ A;  1LQI A;  1KV0 A;  4AAZ A;  2KBH A;  4AB0 A;  2N2Q A;  2LR3 A;  2KPY A;  2MZ0 A;  1MYN A;  1CHZ A;  3E7R L;  1VNA A;  1JZA A;  1CN2 A;  1LQQ A;  1T0Z A;  1T7B A;  1N4N A;  1NRA A;  1SNB A;  2N2R A;  2E3G A;  2LJ7 A;  1P00 A;  1C55 A;  1BK8 A;  4CQK A;  1AYJ A;  4KYP A;  1SEG A;  1I6G A;  2NY9 X;  1WT7 A;  4UJ0 A;  2KBK A;  2ATB A;  1NH5 A;  2M8B B;  1SN1 A;  1SN4 A;  2KJA A;  1I2V A;  1B7D A;  1ZUT A;  2YC1 C;  4HE7 A;  2KYQ A;  1TI5 A;  1BRZ A;  1DJT A;  1NE5 A;  1WMT A;  1ICA A;  2KBJ A;  5CY0 A;  2LI7 A;  4AEI A;  1JKZ A;  1NRB A;  2YEO A;  1B3C A;  1LQH A;  1JZB A;  2LY5 A;  2GL1 A;  1GPT A;  2LJM A;  1JXC A;  1OZZ A;  1NPI A;  1T1T A;  1MR4 A;  1PX9 A;  2I61 A;  2B3C A;  2SN3 A;  5KK4 A;  1FH3 A;  4HHF A;  1I2U A;  1ZFU A;  1I6F A;  2BRZ A;  2KSK A;  1ZYW A;  1P0A A;  2LKB A;  2N66 A;  1WWN A;  1DQ7 A;  2E0H A;  1T7E A;  1ZU3 A;  2LY6 A;  1BCG A;  2B68 A;  1ZVE A;  1ZYV A;  2A7T A;  2E3F A;  1ZVG A;  1OMY A;  3PSM A;  1T7A A;  3E7U X;  2LT8 A;  2ASC A; 
#chains in the Genus database with same CATH topology
 1GPS A;  4V1D C;  2G2K A;  3LDP A;  4HWI A;  3KOX A;  5AQP A;  3D2E B;  5F2R A;  3A8Y A;  1VNB A;  2NY8 X;  1L4V A;  3AY9 A;  5FPE A;  4UAF E;  3ATU A;  1DKG D;  1C56 A;  2MBK A;  2QWQ A;  2E2F A;  5AR0 A;  2E88 A;  1AHO A;  1BMR A;  5AQW A;  5FPN A;  2YBR C;  3QML A;  5AQY A;  1NGJ A;  3KVG A;  1PTX A;  1K8B A;  1PE4 A;  1BA1 A;  2N69 A;  1LQI A;  2KGQ A;  1KV0 A;  2D56 A;  3KOW A;  1HJO A;  2KBH A;  3FZM A;  2N2Q A;  2LR3 A;  1KAY A;  4H5T A;  4AB0 A;  4AAZ A;  2KPY A;  2QXL A;  2QWM A;  5AQT A;  2MZ0 A;  1MYN A;  2QWL A;  4KBO A;  1CHZ A;  3E7R L;  2VY6 A;  1VNA A;  1JZA A;  5AQU A;  1CN2 A;  1NGE A;  1LQQ A;  5AQQ A;  1T0Z A;  1T7B A;  1N4N A;  1NRA A;  1SNB A;  3QFP A;  5BN8 A;  5AQM A;  1NGF A;  1KAZ A;  2E3G A;  2N2R A;  5AQO A;  1XRS B;  2QWO A;  2LJ7 A;  5AQH A;  1P00 A;  4GNI A;  1C55 A;  1NGI A;  1BK8 A;  5AQL A;  4CQK A;  3IUC A;  1AYJ A;  3GL1 A;  4KYP A;  3I33 A;  2QW9 A;  2K35 A;  3C7N A;  4UAD E;  1SEG A;  5AQR A;  2LN8 A;  5EX5 A;  2NY9 X;  1I6G A;  1WT7 A;  4UJ0 A;  2KBK A;  1BUP A;  4H5R A;  2ATB A;  4FSV A;  5AQN A;  1NH5 A;  3QI7 A;  2M8B B;  1SN1 A;  3D2E A;  1QQN A;  3LDN A;  1SN4 A;  3BK3 C;  3HSC A;  2KJA A;  3FZF A;  4H5N A;  1I2V A;  1B7D A;  1ZUT A;  2YC1 C;  2QWR A;  3KP0 A;  2E8A A;  4HE7 A;  1NGD A;  2KYQ A;  3KC6 A;  1TI5 A;  1BRZ A;  3CQX A;  1DJT A;  1NE5 A;  2MN5 A;  5FPD A;  1WMT A;  1NGG A;  5AQI A;  4H5V A;  5BPL A;  2KBJ A;  5CY0 A;  2LI7 A;  4AEI A;  1JKZ A;  1NRB A;  2YEO A;  3FZK A;  4UAE F;  3D2F A;  3SF4 D;  1B3C A;  1LQH A;  1JZB A;  2LY5 A;  2V7Z A;  2GL1 A;  1GPT A;  3R2V A;  1NGC A;  2GMO A;  2LJM A;  1KAX A;  5F1X A;  1JXC A;  3FZL A;  5AQV A;  1OZZ A;  1NPI A;  3M3Z A;  5AQF A;  1T1T A;  5F0X A;  3LDL A;  1MR4 A;  1PX9 A;  2I61 A;  3LDQ A;  2B3C A;  1HX1 A;  2SN3 A;  3CW4 A;  5KK4 A;  1FH3 A;  5AQX A;  1YUW A;  4HHF A;  3ATV A;  5AQS A;  1I2U A;  5EVZ A;  3C7N B;  2QWP A;  1ZFU A;  1I6F A;  2BRZ A;  5AQG A;  1S3X A;  2JDQ D;  3L6Q A;  2KSK A;  2QWN A;  1UGL A;  5FPM A;  1ZYW A;  3LDO A;  2YIP A;  3KP1 A;  1P0A A;  5BN9 A;  3GDQ A;  1NGA A;  2LKB A;  5AQJ A;  2N66 A;  1WWN A;  4H5W A;  1POI A;  3FE1 A;  5BPN A;  3KOY A;  1DQ7 A;  2E0H A;  3KOZ A;  1T7E A;  3JXU A;  5EXW A;  1ATR A;  2YIL A;  1NGB A;  1QQM A;  5AQZ A;  4FL9 A;  1ICA A;  1ZU3 A;  2LY6 A;  1BCG A;  2B68 A;  1ZVE A;  5BPM A;  1ZYV A;  1QQO A;  2A7T A;  2E3F A;  3FZH A;  4IO8 A;  5EY4 A;  3D2F B;  1NGH A;  2KHO A;  3QFU A;  2BUP A;  3GKU A;  3KHW A;  2YIO A;  1ZVG A;  1OMY A;  1HPM A;  1ATS A;  3L4I A;  3PSM A;  1T7A A;  3E7U X;  3L56 A;  2LT8 A;  1BA0 A;  2ASC A;  5AQK A; 
#chains in the Genus database with same CATH homology
 1GPS A;  4V1D C;  1VNB A;  2NY8 X;  1L4V A;  1C56 A;  1AHO A;  1BMR A;  2YBR C;  1PTX A;  1PE4 A;  2N69 A;  2KGQ A;  1LQI A;  1KV0 A;  4AAZ A;  2KBH A;  4AB0 A;  2N2Q A;  2LR3 A;  2KPY A;  2MZ0 A;  1MYN A;  1CHZ A;  3E7R L;  1VNA A;  1JZA A;  1CN2 A;  1LQQ A;  1T0Z A;  1T7B A;  1N4N A;  1NRA A;  1SNB A;  2N2R A;  2E3G A;  2LJ7 A;  1P00 A;  1C55 A;  1BK8 A;  4CQK A;  1AYJ A;  4KYP A;  1SEG A;  1I6G A;  2NY9 X;  1WT7 A;  4UJ0 A;  2KBK A;  2ATB A;  1NH5 A;  2M8B B;  1SN1 A;  1SN4 A;  2KJA A;  1I2V A;  1B7D A;  1ZUT A;  2YC1 C;  4HE7 A;  2KYQ A;  1TI5 A;  1BRZ A;  1DJT A;  1NE5 A;  1WMT A;  1ICA A;  2KBJ A;  5CY0 A;  2LI7 A;  4AEI A;  1JKZ A;  1NRB A;  2YEO A;  1B3C A;  1LQH A;  1JZB A;  2LY5 A;  2GL1 A;  1GPT A;  2LJM A;  1JXC A;  1OZZ A;  1NPI A;  1T1T A;  1MR4 A;  1PX9 A;  2I61 A;  2B3C A;  2SN3 A;  5KK4 A;  1FH3 A;  4HHF A;  1I2U A;  1ZFU A;  1I6F A;  2BRZ A;  2KSK A;  1ZYW A;  1P0A A;  2LKB A;  2N66 A;  1WWN A;  1DQ7 A;  2E0H A;  1T7E A;  1ZU3 A;  2LY6 A;  1BCG A;  2B68 A;  1ZVE A;  1ZYV A;  2A7T A;  2E3F A;  1ZVG A;  1OMY A;  3PSM A;  1T7A A;  3E7U X;  2LT8 A;  2ASC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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