4AAZA

X-ray structure of nicotiana alata defensin 1 nad1
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
molecule tags Antimicrobial protein
total genus 13
structure length 47
sequence length 47
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4aazA00
1GPTA 1NE5A 2LJMA 1P00A 2KBJA 3E7RL 2A7TA 1LQHA 1SNBA 2KJAA 2LY5A 2LY6A 2I61A 3PSMA 1WWNA 1OZZA 2B68A 1BCGA 2GL1A 2LR3A 1BMRA 3E7UX 1MR4A 1P0AA 2KGQA 1PTXA 1T1TA 1JZAA 1ZYVA 4AAZA 1OMYA 2SN3A 1WMTA 1L4VA 2N69A 1NRAA 2YBRC 1MYNA 1JKZA 2ATBA 1LQQA 2KSKA 5CY0A 1T7AA 1CHZA 2YEOA 2NY9X 2LI7A 2LJ7A 1ZFUA 1B7DA 2N66A 1B3CA 1PX9A 1BK8A 2B3CA 1I6GA 1T7EA 2N2RA 1ZYWA 1CN2A 1T0ZA 4UJ0A 1NPIA 1C56A 4KYPA 2E3FA 4AEIA 1T7BA 1C55A 2ASCA 2BRZA 2KPYA 1I2VA 1SEGA 1ICAA 1NRBA 1I2UA 2KYQA 1SN4A 4CQKA 2M8BB 2E3GA 2LT8A 4HHFA 1N4NA 5KK4A 1NH5A 1DQ7A 2LKBA 1KV0A 2MZ0A 1ZVEA 2N2QA 1JZBA 1TI5A 1VNAA 1BRZA 2YC1C 4HE7A 1JXCA 1GPSA 1ZVGA 4V1DC 1SN1A 1PE4A 1ZU3A 1I6FA 4AB0A 1AYJA 1WT7A 1FH3A 1VNBA 2KBHA 1DJTA 2KBKA 1LQIA 1AHOA 1ZUTA 2NY8X 2E0HA
chains in the Genus database with same CATH superfamily
3KOXA 3KOWA 4H5TA 3R2VA 5AQQA 5BN8A 1ATRA 1GPTA 1NE5A 2LN8A 5AQPA 1NGIA 1P00A 2JDQD 2LJMA 3CQXA 3FZHA 2QWPA 2KBJA 3E7RL 2KHOA 2A7TA 1BUPA 3A8YA 1LQHA 5EY4A 1SNBA 2KJAA 2LY5A 3D2FB 2LY6A 4UAFE 2I61A 5AQLA 3PSMA 3GL1A 1WWNA 2YILA 3D2EB 2MBKA 5AQJA 4FL9A 1OZZA 3GKUA 3D2FA 2B68A 3KC6A 1BCGA 5AQNA 3FZMA 4IO8A 2GL1A 2LR3A 5EVZA 5AQZA 1BMRA 1XRSB 2QWMA 1HJOA 2D56A 1NGFA 2E88A 3M3ZA 3ATUA 3E7UX 3ATVA 5AQSA 5FPMA 1MR4A 1P0AA 1QQOA 3KOZA 3LDNA 2KGQA 1HPMA 1PTXA 5BPNA 1UGLA 1POIA 1T1TA 3QFUA 1JZAA 2QWQA 1ZYVA 4AAZA 2K35A 3HSCA 5F1XA 1OMYA 2SN3A 1WMTA 1DKGD 1NGHA 2V7ZA 2N69A 5F0XA 1L4VA 5AQTA 5EX5A 2BUPA 1NRAA 2YBRC 1MYNA 1JKZA 2ATBA 1LQQA 2KSKA 5BN9A 1T7AA 1NGAA 1CHZA 2YEOA 3SF4D 5CY0A 5AQGA 5FPDA 2NY9X 2LI7A 4GNIA 2LJ7A 3D2EA 5AQKA 1ZFUA 3JXUA 3IUCA 1B7DA 2N66A 1B3CA 1PX9A 1BK8A 1NGCA 5AQOA 2B3CA 5AQFA 1NGBA 1I6GA 1T7EA 2N2RA 1ZYWA 3LDPA 1NGDA 3QI7A 5AQUA 1T0ZA 1CN2A 4UJ0A 1QQNA 1K8BA 1NPIA 1C56A 4UADE 4KYPA 3QFPA 2E3FA 4FSVA 1ATSA 2YIOA 4AEIA 5BPLA 1T7BA 2GMOA 2VY6A 5AQVA 1C55A 3KP0A 5FPNA 2ASCA 2BRZA 1KAZA 2KPYA 5AQWA 1I2VA 1SEGA 2QWOA 3FE1A 1ICAA 1NRBA 1HX1A 1I2UA 2KYQA 1SN4A 4CQKA 2M8BB 3L6QA 3AY9A 2E3GA 1KAYA 3FZLA 2LT8A 4HHFA 1N4NA 5FPEA 5KK4A 1BA1A 3CW4A 3KOYA 1NH5A 1QQMA 1DQ7A 2LKBA 5AQYA 3C7NB 5EXWA 1KAXA 5AQHA 1KV0A 3KP1A 2E8AA 1ZVEA 1YUWA 2MZ0A 2N2QA 2QWRA 3BK3C 5AR0A 5AQXA 1JZBA 1TI5A 1VNAA 2QWNA 3LDQA 1BA0A 3C7NA 2YC1C 3L4IA 4H5WA 4HE7A 4HWIA 2MN5A 1S3XA 3I33A 1NGJA 3FZKA 3QMLA 1BRZA 1JXCA 3GDQA 2QXLA 5AQMA 2QWLA 1GPSA 1NGEA 1ZVGA 2G2KA 3KHWA 4V1DC 1SN1A 1PE4A 1NGGA 1ZU3A 3LDLA 1I6FA 4H5VA 4AB0A 4KBOA 3KVGA 5AQIA 3LDOA 4H5RA 5AQRA 1AYJA 3FZFA 1WT7A 2QW9A 1FH3A 3L56A 5F2RA 5BPMA 1VNBA 2KBHA 1DJTA 2KBKA 1LQIA 2E2FA 4UAEF 1AHOA 1ZUTA 4H5NA 2NY8X 2YIPA 2E0HA
chains in the Genus database with same CATH topology
1GPTA 1NE5A 2LJMA 1P00A 2KBJA 3E7RL 2A7TA 1LQHA 1SNBA 2KJAA 2LY5A 2LY6A 2I61A 3PSMA 1WWNA 1OZZA 2B68A 1BCGA 2GL1A 2LR3A 1BMRA 3E7UX 1MR4A 1P0AA 2KGQA 1PTXA 1T1TA 1JZAA 1ZYVA 4AAZA 1OMYA 2SN3A 1WMTA 1L4VA 2N69A 1NRAA 2YBRC 1MYNA 1JKZA 2ATBA 1LQQA 2KSKA 5CY0A 1T7AA 1CHZA 2YEOA 2NY9X 2LI7A 2LJ7A 1ZFUA 1B7DA 2N66A 1B3CA 1PX9A 1BK8A 2B3CA 1I6GA 1T7EA 2N2RA 1ZYWA 1CN2A 1T0ZA 4UJ0A 1NPIA 1C56A 4KYPA 2E3FA 4AEIA 1T7BA 1C55A 2ASCA 2BRZA 2KPYA 1I2VA 1SEGA 1ICAA 1NRBA 1I2UA 2KYQA 1SN4A 4CQKA 2M8BB 2E3GA 2LT8A 4HHFA 1N4NA 5KK4A 1NH5A 1DQ7A 2LKBA 1KV0A 2MZ0A 1ZVEA 2N2QA 1JZBA 1TI5A 1VNAA 1BRZA 2YC1C 4HE7A 1JXCA 1GPSA 1ZVGA 4V1DC 1SN1A 1PE4A 1ZU3A 1I6FA 4AB0A 1AYJA 1WT7A 1FH3A 1VNBA 2KBHA 1DJTA 2KBKA 1LQIA 1AHOA 1ZUTA 2NY8X 2E0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPT A;  1NE5 A;  2LJM A;  1P00 A;  2KBJ A;  3E7R L;  2A7T A;  1LQH A;  1SNB A;  2KJA A;  2LY5 A;  2LY6 A;  2I61 A;  3PSM A;  1WWN A;  1OZZ A;  2B68 A;  1BCG A;  2GL1 A;  2LR3 A;  1BMR A;  3E7U X;  1MR4 A;  1P0A A;  2KGQ A;  1PTX A;  1T1T A;  1JZA A;  1ZYV A;  4AAZ A;  1OMY A;  2SN3 A;  1WMT A;  1L4V A;  2N69 A;  1NRA A;  2YBR C;  1MYN A;  1JKZ A;  2ATB A;  1LQQ A;  2KSK A;  5CY0 A;  1T7A A;  1CHZ A;  2YEO A;  2NY9 X;  2LI7 A;  2LJ7 A;  1ZFU A;  1B7D A;  2N66 A;  1B3C A;  1PX9 A;  1BK8 A;  2B3C A;  1I6G A;  1T7E A;  2N2R A;  1ZYW A;  1CN2 A;  1T0Z A;  4UJ0 A;  1NPI A;  1C56 A;  4KYP A;  2E3F A;  4AEI A;  1T7B A;  1C55 A;  2ASC A;  2BRZ A;  2KPY A;  1I2V A;  1SEG A;  1ICA A;  1NRB A;  1I2U A;  2KYQ A;  1SN4 A;  4CQK A;  2M8B B;  2E3G A;  2LT8 A;  4HHF A;  1N4N A;  5KK4 A;  1NH5 A;  1DQ7 A;  2LKB A;  1KV0 A;  2MZ0 A;  1ZVE A;  2N2Q A;  1JZB A;  1TI5 A;  1VNA A;  1BRZ A;  2YC1 C;  4HE7 A;  1JXC A;  1GPS A;  1ZVG A;  4V1D C;  1SN1 A;  1PE4 A;  1ZU3 A;  1I6F A;  4AB0 A;  1AYJ A;  1WT7 A;  1FH3 A;  1VNB A;  2KBH A;  1DJT A;  2KBK A;  1LQI A;  1AHO A;  1ZUT A;  2NY8 X;  2E0H A; 
#chains in the Genus database with same CATH topology
 3KOX A;  3KOW A;  4H5T A;  3R2V A;  5AQQ A;  5BN8 A;  1ATR A;  1GPT A;  1NE5 A;  2LN8 A;  5AQP A;  1NGI A;  1P00 A;  2JDQ D;  2LJM A;  3CQX A;  3FZH A;  2QWP A;  2KBJ A;  3E7R L;  2KHO A;  2A7T A;  1BUP A;  3A8Y A;  1LQH A;  5EY4 A;  1SNB A;  2KJA A;  2LY5 A;  3D2F B;  2LY6 A;  4UAF E;  2I61 A;  5AQL A;  3PSM A;  3GL1 A;  1WWN A;  2YIL A;  3D2E B;  2MBK A;  5AQJ A;  4FL9 A;  1OZZ A;  3GKU A;  3D2F A;  2B68 A;  3KC6 A;  1BCG A;  5AQN A;  3FZM A;  4IO8 A;  2GL1 A;  2LR3 A;  5EVZ A;  5AQZ A;  1BMR A;  1XRS B;  2QWM A;  1HJO A;  2D56 A;  1NGF A;  2E88 A;  3M3Z A;  3ATU A;  3E7U X;  3ATV A;  5AQS A;  5FPM A;  1MR4 A;  1P0A A;  1QQO A;  3KOZ A;  3LDN A;  2KGQ A;  1HPM A;  1PTX A;  5BPN A;  1UGL A;  1POI A;  1T1T A;  3QFU A;  1JZA A;  2QWQ A;  1ZYV A;  4AAZ A;  2K35 A;  3HSC A;  5F1X A;  1OMY A;  2SN3 A;  1WMT A;  1DKG D;  1NGH A;  2V7Z A;  2N69 A;  5F0X A;  1L4V A;  5AQT A;  5EX5 A;  2BUP A;  1NRA A;  2YBR C;  1MYN A;  1JKZ A;  2ATB A;  1LQQ A;  2KSK A;  5BN9 A;  1T7A A;  1NGA A;  1CHZ A;  2YEO A;  3SF4 D;  5CY0 A;  5AQG A;  5FPD A;  2NY9 X;  2LI7 A;  4GNI A;  2LJ7 A;  3D2E A;  5AQK A;  1ZFU A;  3JXU A;  3IUC A;  1B7D A;  2N66 A;  1B3C A;  1PX9 A;  1BK8 A;  1NGC A;  5AQO A;  2B3C A;  5AQF A;  1NGB A;  1I6G A;  1T7E A;  2N2R A;  1ZYW A;  3LDP A;  1NGD A;  3QI7 A;  5AQU A;  1T0Z A;  1CN2 A;  4UJ0 A;  1QQN A;  1K8B A;  1NPI A;  1C56 A;  4UAD E;  4KYP A;  3QFP A;  2E3F A;  4FSV A;  1ATS A;  2YIO A;  4AEI A;  5BPL A;  1T7B A;  2GMO A;  2VY6 A;  5AQV A;  1C55 A;  3KP0 A;  5FPN A;  2ASC A;  2BRZ A;  1KAZ A;  2KPY A;  5AQW A;  1I2V A;  1SEG A;  2QWO A;  3FE1 A;  1ICA A;  1NRB A;  1HX1 A;  1I2U A;  2KYQ A;  1SN4 A;  4CQK A;  2M8B B;  3L6Q A;  3AY9 A;  2E3G A;  1KAY A;  3FZL A;  2LT8 A;  4HHF A;  1N4N A;  5FPE A;  5KK4 A;  1BA1 A;  3CW4 A;  3KOY A;  1NH5 A;  1QQM A;  1DQ7 A;  2LKB A;  5AQY A;  3C7N B;  5EXW A;  1KAX A;  5AQH A;  1KV0 A;  3KP1 A;  2E8A A;  1ZVE A;  1YUW A;  2MZ0 A;  2N2Q A;  2QWR A;  3BK3 C;  5AR0 A;  5AQX A;  1JZB A;  1TI5 A;  1VNA A;  2QWN A;  3LDQ A;  1BA0 A;  3C7N A;  2YC1 C;  3L4I A;  4H5W A;  4HE7 A;  4HWI A;  2MN5 A;  1S3X A;  3I33 A;  1NGJ A;  3FZK A;  3QML A;  1BRZ A;  1JXC A;  3GDQ A;  2QXL A;  5AQM A;  2QWL A;  1GPS A;  1NGE A;  1ZVG A;  2G2K A;  3KHW A;  4V1D C;  1SN1 A;  1PE4 A;  1NGG A;  1ZU3 A;  3LDL A;  1I6F A;  4H5V A;  4AB0 A;  4KBO A;  3KVG A;  5AQI A;  3LDO A;  4H5R A;  5AQR A;  1AYJ A;  3FZF A;  1WT7 A;  2QW9 A;  1FH3 A;  3L56 A;  5F2R A;  5BPM A;  1VNB A;  2KBH A;  1DJT A;  2KBK A;  1LQI A;  2E2F A;  4UAE F;  1AHO A;  1ZUT A;  4H5N A;  2NY8 X;  2YIP A;  2E0H A; 
#chains in the Genus database with same CATH homology
 1GPT A;  1NE5 A;  2LJM A;  1P00 A;  2KBJ A;  3E7R L;  2A7T A;  1LQH A;  1SNB A;  2KJA A;  2LY5 A;  2LY6 A;  2I61 A;  3PSM A;  1WWN A;  1OZZ A;  2B68 A;  1BCG A;  2GL1 A;  2LR3 A;  1BMR A;  3E7U X;  1MR4 A;  1P0A A;  2KGQ A;  1PTX A;  1T1T A;  1JZA A;  1ZYV A;  4AAZ A;  1OMY A;  2SN3 A;  1WMT A;  1L4V A;  2N69 A;  1NRA A;  2YBR C;  1MYN A;  1JKZ A;  2ATB A;  1LQQ A;  2KSK A;  5CY0 A;  1T7A A;  1CHZ A;  2YEO A;  2NY9 X;  2LI7 A;  2LJ7 A;  1ZFU A;  1B7D A;  2N66 A;  1B3C A;  1PX9 A;  1BK8 A;  2B3C A;  1I6G A;  1T7E A;  2N2R A;  1ZYW A;  1CN2 A;  1T0Z A;  4UJ0 A;  1NPI A;  1C56 A;  4KYP A;  2E3F A;  4AEI A;  1T7B A;  1C55 A;  2ASC A;  2BRZ A;  2KPY A;  1I2V A;  1SEG A;  1ICA A;  1NRB A;  1I2U A;  2KYQ A;  1SN4 A;  4CQK A;  2M8B B;  2E3G A;  2LT8 A;  4HHF A;  1N4N A;  5KK4 A;  1NH5 A;  1DQ7 A;  2LKB A;  1KV0 A;  2MZ0 A;  1ZVE A;  2N2Q A;  1JZB A;  1TI5 A;  1VNA A;  1BRZ A;  2YC1 C;  4HE7 A;  1JXC A;  1GPS A;  1ZVG A;  4V1D C;  1SN1 A;  1PE4 A;  1ZU3 A;  1I6F A;  4AB0 A;  1AYJ A;  1WT7 A;  1FH3 A;  1VNB A;  2KBH A;  1DJT A;  2KBK A;  1LQI A;  1AHO A;  1ZUT A;  2NY8 X;  2E0H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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