2LI7A

Solution structure of cssii
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
66
structure length
66
Chain Sequence
KEGYLVSKSTGCKYECLKLGDNDYCLRECKQQYGKSSGGYCYAFACWCTHLYEQAVVWPLPNKTCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Beta-mammal toxin Css2
publication title Solution structure of native and recombinant expressed toxin CssII from the venom of the scorpion Centruroides suffusus suffusus, and their effects on Nav1.5 Sodium channels.
pubmed doi rcsb
total genus 11
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2011-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2li7A00
2N66A 1I2VA 5KK4A 1T7AA 1PX9A 2KJAA 2N69A 1BRZA 1NRAA 1WT7A 2M8BB 1BMRA 2B68A 1OZZA 1L4VA 1NRBA 2KBKA 4HHFA 2LI7A 1NH5A 1WMTA 4HE7A 2KBHA 1C55A 3PSMA 2LJ7A 1JXCA 1BCGA 1LQIA 1PE4A 1FH3A 2LJMA 2KSKA 1DQ7A 1VNAA 1ZUTA 1NPIA 2A7TA 1P00A 4KYPA 2KYQA 1MYNA 2KPYA 1ZYVA 4AAZA 2BRZA 1SN4A 1ZVEA 1NE5A 1LQHA 4UJ0A 1T7EA 2LY6A 2YC1C 1WWNA 3E7RL 2KGQA 1GPSA 2YBRC 1ICAA 2LR3A 1ZVGA 1JZBA 1B7DA 4AB0A 2B3CA 1T1TA 1ZU3A 1T7BA 2SN3A 2E3GA 2I61A 1B3CA 1I6GA 2E0HA 3E7UX 1T0ZA 4AEIA 1JZAA 1CHZA 2N2RA 1JKZA 2N2QA 1ZFUA 1VNBA 2NY8X 1OMYA 2ASCA 1MR4A 1N4NA 1P0AA 1PTXA 2LT8A 1KV0A 1SNBA 2MZ0A 2ATBA 2GL1A 1I6FA 1GPTA 2E3FA 1SEGA 4CQKA 1I2UA 4V1DC 2LKBA 5CY0A 1SN1A 2LY5A 1TI5A 2KBJA 1LQQA 1DJTA 1ZYWA 1BK8A 1AHOA 1AYJA 2YEOA 1CN2A 2NY9X 1C56A
chains in the Genus database with same CATH superfamily
2N66A 2YILA 1HPMA 3ATVA 5KK4A 1I2VA 1BA1A 3IUCA 1T7AA 3CQXA 5AQTA 1PX9A 2QWRA 3GL1A 4H5RA 2KJAA 3HSCA 1CN2A 2N69A 3SF4D 1BRZA 1NRAA 2QWQA 4H5NA 5AQNA 1WT7A 1KAXA 2M8BB 4H5TA 5AQLA 1BMRA 2B68A 1OZZA 3QI7A 3KP0A 2QWNA 2KHOA 1L4VA 3KP1A 1NRBA 3FZFA 1NGBA 2KBKA 4HHFA 2LI7A 1NH5A 1WMTA 1NGIA 4HE7A 2KBHA 2QW9A 3C7NB 1POIA 1C55A 3PSMA 3M3ZA 4UAEF 2LJ7A 5FPEA 1K8BA 5AQFA 1JXCA 2E2FA 1BCGA 1NGEA 5F1XA 3LDNA 1LQIA 1PE4A 3QFPA 2LN8A 2K35A 2QWPA 3KOXA 2LJMA 2YEOA 3BK3C 5AQIA 5AR0A 2V7ZA 2KSKA 1DQ7A 1VNAA 2E88A 2YIOA 5BN8A 1ZUTA 3GKUA 1NPIA 2A7TA 3LDPA 3ATUA 1ATSA 1P00A 3KHWA 1NGFA 4KYPA 2KYQA 1MYNA 2D56A 2QWMA 2KPYA 2G2KA 1ZYVA 2MN5A 3QMLA 1QQOA 4AAZA 4H5WA 2BRZA 1NGHA 1SN4A 5BPMA 1QQNA 1ZVEA 1NE5A 5AQHA 1LQHA 3KOWA 4UJ0A 3L6QA 1T7EA 2LY6A 3LDLA 2QXLA 2YC1C 1WWNA 1KAYA 3JXUA 1HJOA 3C7NA 3E7RL 2KGQA 1BA0A 2GMOA 5AQGA 3FZKA 1GPSA 4FL9A 2YBRC 3FE1A 1ICAA 3I33A 2LR3A 3QFUA 2MBKA 1ZVGA 5FPDA 1JZBA 1B7DA 4AB0A 2B3CA 1T1TA 1ZU3A 1NGGA 3D2FA 1T7BA 2SN3A 2E3GA 2I61A 2VY6A 3AY9A 3D2EA 1NGCA 2E0HA 3E7UX 5FPMA 3LDQA 5BN9A 5AQOA 1NGDA 1T0ZA 5AQMA 5AQWA 4KBOA 4AEIA 1JZAA 3FZMA 3A8YA 5F0XA 1CHZA 5FPNA 3L56A 2N2RA 1JKZA 4GNIA 5EY4A 2N2QA 2QWOA 1ZFUA 1BUPA 1VNBA 2NY8X 2JDQD 4UADE 1OMYA 2E8AA 2ASCA 3FZHA 1MR4A 1N4NA 1P0AA 3KVGA 5AQQA 1PTXA 1QQMA 5EVZA 5AQXA 5F2RA 1FH3A 2LT8A 1KV0A 1SNBA 2MZ0A 3GDQA 5AQVA 5AQUA 2ATBA 5AQYA 5EXWA 2GL1A 1I6FA 1GPTA 5BPNA 5AQJA 1NGJA 2E3FA 4UAFE 4FSVA 1SEGA 1YUWA 3FZLA 1I6GA 4IO8A 4CQKA 4HWIA 1ATRA 1B3CA 1DKGD 5BPLA 1I2UA 4V1DC 1KAZA 2LKBA 2QWLA 2YIPA 3LDOA 1SN1A 2LY5A 5CY0A 1TI5A 5EX5A 2KBJA 5AQKA 3KC6A 1LQQA 3KOYA 5AQZA 3KOZA 1DJTA 1HX1A 1UGLA 1S3XA 1XRSB 3D2FB 5AQRA 3R2VA 1NGAA 1ZYWA 1BK8A 1AHOA 3D2EB 5AQPA 1AYJA 3L4IA 4H5VA 2BUPA 3CW4A 2NY9X 5AQSA 1C56A
chains in the Genus database with same CATH topology
2N66A 1I2VA 5KK4A 1T7AA 1PX9A 2KJAA 2N69A 1BRZA 1NRAA 1WT7A 2M8BB 1BMRA 2B68A 1OZZA 1L4VA 1NRBA 2KBKA 4HHFA 2LI7A 1NH5A 1WMTA 4HE7A 2KBHA 1C55A 3PSMA 2LJ7A 1JXCA 1BCGA 1LQIA 1PE4A 1FH3A 2LJMA 2KSKA 1DQ7A 1VNAA 1ZUTA 1NPIA 2A7TA 1P00A 4KYPA 2KYQA 1MYNA 2KPYA 1ZYVA 4AAZA 2BRZA 1SN4A 1ZVEA 1NE5A 1LQHA 4UJ0A 1T7EA 2LY6A 2YC1C 1WWNA 3E7RL 2KGQA 1GPSA 2YBRC 1ICAA 2LR3A 1ZVGA 1JZBA 1B7DA 4AB0A 2B3CA 1T1TA 1ZU3A 1T7BA 2SN3A 2E3GA 2I61A 1B3CA 1I6GA 2E0HA 3E7UX 1T0ZA 4AEIA 1JZAA 1CHZA 2N2RA 1JKZA 2N2QA 1ZFUA 1VNBA 2NY8X 1OMYA 2ASCA 1MR4A 1N4NA 1P0AA 1PTXA 2LT8A 1KV0A 1SNBA 2MZ0A 2ATBA 2GL1A 1I6FA 1GPTA 2E3FA 1SEGA 4CQKA 1I2UA 4V1DC 2LKBA 5CY0A 1SN1A 2LY5A 1TI5A 2KBJA 1LQQA 1DJTA 1ZYWA 1BK8A 1AHOA 1AYJA 2YEOA 1CN2A 2NY9X 1C56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N66 A;  1I2V A;  5KK4 A;  1T7A A;  1PX9 A;  2KJA A;  2N69 A;  1BRZ A;  1NRA A;  1WT7 A;  2M8B B;  1BMR A;  2B68 A;  1OZZ A;  1L4V A;  1NRB A;  2KBK A;  4HHF A;  2LI7 A;  1NH5 A;  1WMT A;  4HE7 A;  2KBH A;  1C55 A;  3PSM A;  2LJ7 A;  1JXC A;  1BCG A;  1LQI A;  1PE4 A;  1FH3 A;  2LJM A;  2KSK A;  1DQ7 A;  1VNA A;  1ZUT A;  1NPI A;  2A7T A;  1P00 A;  4KYP A;  2KYQ A;  1MYN A;  2KPY A;  1ZYV A;  4AAZ A;  2BRZ A;  1SN4 A;  1ZVE A;  1NE5 A;  1LQH A;  4UJ0 A;  1T7E A;  2LY6 A;  2YC1 C;  1WWN A;  3E7R L;  2KGQ A;  1GPS A;  2YBR C;  1ICA A;  2LR3 A;  1ZVG A;  1JZB A;  1B7D A;  4AB0 A;  2B3C A;  1T1T A;  1ZU3 A;  1T7B A;  2SN3 A;  2E3G A;  2I61 A;  1B3C A;  1I6G A;  2E0H A;  3E7U X;  1T0Z A;  4AEI A;  1JZA A;  1CHZ A;  2N2R A;  1JKZ A;  2N2Q A;  1ZFU A;  1VNB A;  2NY8 X;  1OMY A;  2ASC A;  1MR4 A;  1N4N A;  1P0A A;  1PTX A;  2LT8 A;  1KV0 A;  1SNB A;  2MZ0 A;  2ATB A;  2GL1 A;  1I6F A;  1GPT A;  2E3F A;  1SEG A;  4CQK A;  1I2U A;  4V1D C;  2LKB A;  5CY0 A;  1SN1 A;  2LY5 A;  1TI5 A;  2KBJ A;  1LQQ A;  1DJT A;  1ZYW A;  1BK8 A;  1AHO A;  1AYJ A;  2YEO A;  1CN2 A;  2NY9 X;  1C56 A; 
#chains in the Genus database with same CATH topology
 2N66 A;  2YIL A;  1HPM A;  3ATV A;  5KK4 A;  1I2V A;  1BA1 A;  3IUC A;  1T7A A;  3CQX A;  5AQT A;  1PX9 A;  2QWR A;  3GL1 A;  4H5R A;  2KJA A;  3HSC A;  1CN2 A;  2N69 A;  3SF4 D;  1BRZ A;  1NRA A;  2QWQ A;  4H5N A;  5AQN A;  1WT7 A;  1KAX A;  2M8B B;  4H5T A;  5AQL A;  1BMR A;  2B68 A;  1OZZ A;  3QI7 A;  3KP0 A;  2QWN A;  2KHO A;  1L4V A;  3KP1 A;  1NRB A;  3FZF A;  1NGB A;  2KBK A;  4HHF A;  2LI7 A;  1NH5 A;  1WMT A;  1NGI A;  4HE7 A;  2KBH A;  2QW9 A;  3C7N B;  1POI A;  1C55 A;  3PSM A;  3M3Z A;  4UAE F;  2LJ7 A;  5FPE A;  1K8B A;  5AQF A;  1JXC A;  2E2F A;  1BCG A;  1NGE A;  5F1X A;  3LDN A;  1LQI A;  1PE4 A;  3QFP A;  2LN8 A;  2K35 A;  2QWP A;  3KOX A;  2LJM A;  2YEO A;  3BK3 C;  5AQI A;  5AR0 A;  2V7Z A;  2KSK A;  1DQ7 A;  1VNA A;  2E88 A;  2YIO A;  5BN8 A;  1ZUT A;  3GKU A;  1NPI A;  2A7T A;  3LDP A;  3ATU A;  1ATS A;  1P00 A;  3KHW A;  1NGF A;  4KYP A;  2KYQ A;  1MYN A;  2D56 A;  2QWM A;  2KPY A;  2G2K A;  1ZYV A;  2MN5 A;  3QML A;  1QQO A;  4AAZ A;  4H5W A;  2BRZ A;  1NGH A;  1SN4 A;  5BPM A;  1QQN A;  1ZVE A;  1NE5 A;  5AQH A;  1LQH A;  3KOW A;  4UJ0 A;  3L6Q A;  1T7E A;  2LY6 A;  3LDL A;  2QXL A;  2YC1 C;  1WWN A;  1KAY A;  3JXU A;  1HJO A;  3C7N A;  3E7R L;  2KGQ A;  1BA0 A;  2GMO A;  5AQG A;  3FZK A;  1GPS A;  4FL9 A;  2YBR C;  3FE1 A;  1ICA A;  3I33 A;  2LR3 A;  3QFU A;  2MBK A;  1ZVG A;  5FPD A;  1JZB A;  1B7D A;  4AB0 A;  2B3C A;  1T1T A;  1ZU3 A;  1NGG A;  3D2F A;  1T7B A;  2SN3 A;  2E3G A;  2I61 A;  2VY6 A;  3AY9 A;  3D2E A;  1NGC A;  2E0H A;  3E7U X;  5FPM A;  3LDQ A;  5BN9 A;  5AQO A;  1NGD A;  1T0Z A;  5AQM A;  5AQW A;  4KBO A;  4AEI A;  1JZA A;  3FZM A;  3A8Y A;  5F0X A;  1CHZ A;  5FPN A;  3L56 A;  2N2R A;  1JKZ A;  4GNI A;  5EY4 A;  2N2Q A;  2QWO A;  1ZFU A;  1BUP A;  1VNB A;  2NY8 X;  2JDQ D;  4UAD E;  1OMY A;  2E8A A;  2ASC A;  3FZH A;  1MR4 A;  1N4N A;  1P0A A;  3KVG A;  5AQQ A;  1PTX A;  1QQM A;  5EVZ A;  5AQX A;  5F2R A;  1FH3 A;  2LT8 A;  1KV0 A;  1SNB A;  2MZ0 A;  3GDQ A;  5AQV A;  5AQU A;  2ATB A;  5AQY A;  5EXW A;  2GL1 A;  1I6F A;  1GPT A;  5BPN A;  5AQJ A;  1NGJ A;  2E3F A;  4UAF E;  4FSV A;  1SEG A;  1YUW A;  3FZL A;  1I6G A;  4IO8 A;  4CQK A;  4HWI A;  1ATR A;  1B3C A;  1DKG D;  5BPL A;  1I2U A;  4V1D C;  1KAZ A;  2LKB A;  2QWL A;  2YIP A;  3LDO A;  1SN1 A;  2LY5 A;  5CY0 A;  1TI5 A;  5EX5 A;  2KBJ A;  5AQK A;  3KC6 A;  1LQQ A;  3KOY A;  5AQZ A;  3KOZ A;  1DJT A;  1HX1 A;  1UGL A;  1S3X A;  1XRS B;  3D2F B;  5AQR A;  3R2V A;  1NGA A;  1ZYW A;  1BK8 A;  1AHO A;  3D2E B;  5AQP A;  1AYJ A;  3L4I A;  4H5V A;  2BUP A;  3CW4 A;  2NY9 X;  5AQS A;  1C56 A; 
#chains in the Genus database with same CATH homology
 2N66 A;  1I2V A;  5KK4 A;  1T7A A;  1PX9 A;  2KJA A;  2N69 A;  1BRZ A;  1NRA A;  1WT7 A;  2M8B B;  1BMR A;  2B68 A;  1OZZ A;  1L4V A;  1NRB A;  2KBK A;  4HHF A;  2LI7 A;  1NH5 A;  1WMT A;  4HE7 A;  2KBH A;  1C55 A;  3PSM A;  2LJ7 A;  1JXC A;  1BCG A;  1LQI A;  1PE4 A;  1FH3 A;  2LJM A;  2KSK A;  1DQ7 A;  1VNA A;  1ZUT A;  1NPI A;  2A7T A;  1P00 A;  4KYP A;  2KYQ A;  1MYN A;  2KPY A;  1ZYV A;  4AAZ A;  2BRZ A;  1SN4 A;  1ZVE A;  1NE5 A;  1LQH A;  4UJ0 A;  1T7E A;  2LY6 A;  2YC1 C;  1WWN A;  3E7R L;  2KGQ A;  1GPS A;  2YBR C;  1ICA A;  2LR3 A;  1ZVG A;  1JZB A;  1B7D A;  4AB0 A;  2B3C A;  1T1T A;  1ZU3 A;  1T7B A;  2SN3 A;  2E3G A;  2I61 A;  1B3C A;  1I6G A;  2E0H A;  3E7U X;  1T0Z A;  4AEI A;  1JZA A;  1CHZ A;  2N2R A;  1JKZ A;  2N2Q A;  1ZFU A;  1VNB A;  2NY8 X;  1OMY A;  2ASC A;  1MR4 A;  1N4N A;  1P0A A;  1PTX A;  2LT8 A;  1KV0 A;  1SNB A;  2MZ0 A;  2ATB A;  2GL1 A;  1I6F A;  1GPT A;  2E3F A;  1SEG A;  4CQK A;  1I2U A;  4V1D C;  2LKB A;  5CY0 A;  1SN1 A;  2LY5 A;  1TI5 A;  2KBJ A;  1LQQ A;  1DJT A;  1ZYW A;  1BK8 A;  1AHO A;  1AYJ A;  2YEO A;  1CN2 A;  2NY9 X;  1C56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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