4V1DC

Ternary complex among two human derived single chain antibody fragments and cn2 toxin from scorpion centruroides noxius.
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
65
structure length
65
Chain Sequence
KEGYLVDKNTGCKYECLKLGDNDYCLRECKQQYGKGAGGYCYAFACWCTHLYEQAIVWPLPNKRC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/immune system
source organism Homo sapiens
publication title Optimal Neutralization of Centruroides Noxius Venom is Understood Through a Structural Complex between Two Antibody Fragments and the Cn2 Toxin.
pubmed doi rcsb
molecule keywords SINGLE CHAIN ANTIBODY FRAGMENT LR, HEAVY CHAIN
total genus 11
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2014-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4v1dC00
1CN2A 1NPIA 1VNAA 1B3CA 1PTXA 1NRAA 1ZYWA 2LKBA 1GPSA 2YEOA 2M8BB 1JXCA 1WWNA 1BK8A 1I2UA 2KBHA 2ATBA 2KBJA 4AB0A 1LQIA 4AEIA 1DQ7A 1SN1A 2LY6A 1OZZA 1T0ZA 2NY8X 2B3CA 1LQHA 4AAZA 1NRBA 2LR3A 1I6FA 1NE5A 2SN3A 1PE4A 2A7TA 2KGQA 4KYPA 1TI5A 1JKZA 2YBRC 2KPYA 2LJMA 1ZYVA 5CY0A 2MZ0A 1AHOA 2GL1A 1SN4A 2KJAA 2KSKA 1KV0A 1ZFUA 4HHFA 2N69A 1GPTA 1P0AA 1ICAA 3E7UX 2N66A 4HE7A 2E3GA 1N4NA 2KYQA 2LI7A 1DJTA 2N2RA 1WMTA 1T7AA 2I61A 1JZBA 1I2VA 1FH3A 1WT7A 1AYJA 1PX9A 1JZAA 2B68A 4CQKA 1CHZA 1OMYA 2E3FA 1L4VA 2ASCA 1SEGA 1MR4A 3E7RL 1BMRA 1B7DA 2BRZA 1T1TA 2N2QA 3PSMA 2LJ7A 2NY9X 1T7EA 1ZVGA 2E0HA 1ZVEA 2LY5A 4UJ0A 1ZU3A 1ZUTA 1P00A 1C55A 4V1DC 1BRZA 2YC1C 1I6GA 2LT8A 5KK4A 1SNBA 1C56A 2KBKA 1LQQA 1MYNA 1NH5A 1T7BA 1VNBA 1BCGA
chains in the Genus database with same CATH superfamily
1CN2A 5AQTA 1NPIA 1VNAA 1B3CA 1BUPA 1PTXA 1YUWA 1NRAA 1ZYWA 2LKBA 3R2VA 1GPSA 4UADE 3FZFA 1KAYA 1NGEA 2YEOA 1HJOA 2YIPA 2M8BB 3GL1A 4HWIA 1JXCA 1NGBA 2D56A 2QW9A 5AQIA 1WWNA 1BK8A 2VY6A 4H5VA 5EVZA 5EY4A 1I2UA 2KBHA 5AQJA 2ATBA 2KBJA 5AQHA 3CW4A 5EX5A 1LQIA 4AB0A 4AEIA 1DQ7A 1SN1A 2LY6A 3QFPA 3KOWA 3A8YA 3KOYA 5AQLA 1OZZA 1T0ZA 2NY8X 2B3CA 3FZHA 5BPNA 3D2EB 1LQHA 4AAZA 3M3ZA 5AQXA 5AQMA 3KOXA 1NRBA 2LR3A 1I6FA 3FZMA 5AR0A 1NE5A 5FPNA 2SN3A 5AQVA 1PE4A 2A7TA 2QWPA 3QMLA 5F2RA 3ATVA 4UAFE 3GKUA 2KGQA 4FL9A 5AQPA 5AQWA 1NGDA 1POIA 5F1XA 4KYPA 5FPEA 1HX1A 1NGJA 3IUCA 3KVGA 1KAZA 1TI5A 3QI7A 3ATUA 1JKZA 5FPDA 3L4IA 2YBRC 5F0XA 1ATRA 2KPYA 2LJMA 1ZYVA 5AQZA 5CY0A 1NGGA 2MZ0A 3KOZA 3KP1A 1ATSA 1AHOA 2GL1A 3KHWA 4H5WA 5AQUA 1SN4A 2YIOA 2KJAA 3L56A 5AQNA 2KSKA 1KV0A 1ZFUA 3QFUA 4HHFA 3SF4D 2N69A 3LDLA 1GPTA 2BUPA 2E8AA 1P0AA 2QWNA 3D2EA 1DKGD 3BK3C 3E7UX 3L6QA 1ICAA 3FZLA 3JXUA 2N66A 4HE7A 1BA1A 2E3GA 1N4NA 2KYQA 1XRSB 5AQOA 1QQMA 2LI7A 4FSVA 2G2KA 1DJTA 2MN5A 2N2RA 1WMTA 3FZKA 5AQQA 1T7AA 2I61A 3D2FB 1JZBA 4IO8A 1HPMA 5AQYA 2QWOA 2QWRA 1I2VA 2K35A 2E88A 1WT7A 1FH3A 3D2FA 4GNIA 1AYJA 1PX9A 1JZAA 2B68A 3LDQA 4H5RA 5AQKA 5BPLA 3LDPA 4CQKA 1NGFA 1CHZA 1OMYA 2E3FA 4H5TA 1L4VA 2ASCA 1SEGA 1BA0A 1MR4A 3C7NB 3E7RL 4UAEF 2E2FA 1NGCA 5FPMA 5AQRA 2QWLA 1BMRA 1B7DA 2BRZA 2GMOA 2QWQA 1T1TA 1NGHA 3AY9A 3C7NA 3LDNA 5BPMA 2N2QA 3CQXA 2KHOA 3PSMA 5AQFA 1NGAA 2V7ZA 5BN8A 2LJ7A 1UGLA 2NY9X 3KP0A 5AQSA 1NGIA 1T7EA 1ZVGA 5BN9A 2YILA 2E0HA 1QQOA 3GDQA 2QXLA 3KC6A 1ZVEA 2LY5A 4UJ0A 1QQNA 1ZU3A 1KAXA 1ZUTA 1P00A 3I33A 1C55A 2LN8A 4V1DC 3LDOA 2MBKA 4H5NA 3FE1A 1BRZA 5AQGA 2YC1C 4KBOA 1I6GA 2LT8A 5KK4A 1SNBA 1C56A 3HSCA 2KBKA 5EXWA 1LQQA 1MYNA 1K8BA 1S3XA 1NH5A 1T7BA 2QWMA 1VNBA 2JDQD 1BCGA
chains in the Genus database with same CATH topology
1CN2A 1NPIA 1VNAA 1B3CA 1PTXA 1NRAA 1ZYWA 2LKBA 1GPSA 2YEOA 2M8BB 1JXCA 1WWNA 1BK8A 1I2UA 2KBHA 2ATBA 2KBJA 4AB0A 1LQIA 4AEIA 1DQ7A 1SN1A 2LY6A 1OZZA 1T0ZA 2NY8X 2B3CA 1LQHA 4AAZA 1NRBA 2LR3A 1I6FA 1NE5A 2SN3A 1PE4A 2A7TA 2KGQA 4KYPA 1TI5A 1JKZA 2YBRC 2KPYA 2LJMA 1ZYVA 5CY0A 2MZ0A 1AHOA 2GL1A 1SN4A 2KJAA 2KSKA 1KV0A 1ZFUA 4HHFA 2N69A 1GPTA 1P0AA 1ICAA 3E7UX 2N66A 4HE7A 2E3GA 1N4NA 2KYQA 2LI7A 1DJTA 2N2RA 1WMTA 1T7AA 2I61A 1JZBA 1I2VA 1FH3A 1WT7A 1AYJA 1PX9A 1JZAA 2B68A 4CQKA 1CHZA 1OMYA 2E3FA 1L4VA 2ASCA 1SEGA 1MR4A 3E7RL 1BMRA 1B7DA 2BRZA 1T1TA 2N2QA 3PSMA 2LJ7A 2NY9X 1T7EA 1ZVGA 2E0HA 1ZVEA 2LY5A 4UJ0A 1ZU3A 1ZUTA 1P00A 1C55A 4V1DC 1BRZA 2YC1C 1I6GA 2LT8A 5KK4A 1SNBA 1C56A 2KBKA 1LQQA 1MYNA 1NH5A 1T7BA 1VNBA 1BCGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CN2 A;  1NPI A;  1VNA A;  1B3C A;  1PTX A;  1NRA A;  1ZYW A;  2LKB A;  1GPS A;  2YEO A;  2M8B B;  1JXC A;  1WWN A;  1BK8 A;  1I2U A;  2KBH A;  2ATB A;  2KBJ A;  4AB0 A;  1LQI A;  4AEI A;  1DQ7 A;  1SN1 A;  2LY6 A;  1OZZ A;  1T0Z A;  2NY8 X;  2B3C A;  1LQH A;  4AAZ A;  1NRB A;  2LR3 A;  1I6F A;  1NE5 A;  2SN3 A;  1PE4 A;  2A7T A;  2KGQ A;  4KYP A;  1TI5 A;  1JKZ A;  2YBR C;  2KPY A;  2LJM A;  1ZYV A;  5CY0 A;  2MZ0 A;  1AHO A;  2GL1 A;  1SN4 A;  2KJA A;  2KSK A;  1KV0 A;  1ZFU A;  4HHF A;  2N69 A;  1GPT A;  1P0A A;  1ICA A;  3E7U X;  2N66 A;  4HE7 A;  2E3G A;  1N4N A;  2KYQ A;  2LI7 A;  1DJT A;  2N2R A;  1WMT A;  1T7A A;  2I61 A;  1JZB A;  1I2V A;  1FH3 A;  1WT7 A;  1AYJ A;  1PX9 A;  1JZA A;  2B68 A;  4CQK A;  1CHZ A;  1OMY A;  2E3F A;  1L4V A;  2ASC A;  1SEG A;  1MR4 A;  3E7R L;  1BMR A;  1B7D A;  2BRZ A;  1T1T A;  2N2Q A;  3PSM A;  2LJ7 A;  2NY9 X;  1T7E A;  1ZVG A;  2E0H A;  1ZVE A;  2LY5 A;  4UJ0 A;  1ZU3 A;  1ZUT A;  1P00 A;  1C55 A;  4V1D C;  1BRZ A;  2YC1 C;  1I6G A;  2LT8 A;  5KK4 A;  1SNB A;  1C56 A;  2KBK A;  1LQQ A;  1MYN A;  1NH5 A;  1T7B A;  1VNB A;  1BCG A; 
#chains in the Genus database with same CATH topology
 1CN2 A;  5AQT A;  1NPI A;  1VNA A;  1B3C A;  1BUP A;  1PTX A;  1YUW A;  1NRA A;  1ZYW A;  2LKB A;  3R2V A;  1GPS A;  4UAD E;  3FZF A;  1KAY A;  1NGE A;  2YEO A;  1HJO A;  2YIP A;  2M8B B;  3GL1 A;  4HWI A;  1JXC A;  1NGB A;  2D56 A;  2QW9 A;  5AQI A;  1WWN A;  1BK8 A;  2VY6 A;  4H5V A;  5EVZ A;  5EY4 A;  1I2U A;  2KBH A;  5AQJ A;  2ATB A;  2KBJ A;  5AQH A;  3CW4 A;  5EX5 A;  1LQI A;  4AB0 A;  4AEI A;  1DQ7 A;  1SN1 A;  2LY6 A;  3QFP A;  3KOW A;  3A8Y A;  3KOY A;  5AQL A;  1OZZ A;  1T0Z A;  2NY8 X;  2B3C A;  3FZH A;  5BPN A;  3D2E B;  1LQH A;  4AAZ A;  3M3Z A;  5AQX A;  5AQM A;  3KOX A;  1NRB A;  2LR3 A;  1I6F A;  3FZM A;  5AR0 A;  1NE5 A;  5FPN A;  2SN3 A;  5AQV A;  1PE4 A;  2A7T A;  2QWP A;  3QML A;  5F2R A;  3ATV A;  4UAF E;  3GKU A;  2KGQ A;  4FL9 A;  5AQP A;  5AQW A;  1NGD A;  1POI A;  5F1X A;  4KYP A;  5FPE A;  1HX1 A;  1NGJ A;  3IUC A;  3KVG A;  1KAZ A;  1TI5 A;  3QI7 A;  3ATU A;  1JKZ A;  5FPD A;  3L4I A;  2YBR C;  5F0X A;  1ATR A;  2KPY A;  2LJM A;  1ZYV A;  5AQZ A;  5CY0 A;  1NGG A;  2MZ0 A;  3KOZ A;  3KP1 A;  1ATS A;  1AHO A;  2GL1 A;  3KHW A;  4H5W A;  5AQU A;  1SN4 A;  2YIO A;  2KJA A;  3L56 A;  5AQN A;  2KSK A;  1KV0 A;  1ZFU A;  3QFU A;  4HHF A;  3SF4 D;  2N69 A;  3LDL A;  1GPT A;  2BUP A;  2E8A A;  1P0A A;  2QWN A;  3D2E A;  1DKG D;  3BK3 C;  3E7U X;  3L6Q A;  1ICA A;  3FZL A;  3JXU A;  2N66 A;  4HE7 A;  1BA1 A;  2E3G A;  1N4N A;  2KYQ A;  1XRS B;  5AQO A;  1QQM A;  2LI7 A;  4FSV A;  2G2K A;  1DJT A;  2MN5 A;  2N2R A;  1WMT A;  3FZK A;  5AQQ A;  1T7A A;  2I61 A;  3D2F B;  1JZB A;  4IO8 A;  1HPM A;  5AQY A;  2QWO A;  2QWR A;  1I2V A;  2K35 A;  2E88 A;  1WT7 A;  1FH3 A;  3D2F A;  4GNI A;  1AYJ A;  1PX9 A;  1JZA A;  2B68 A;  3LDQ A;  4H5R A;  5AQK A;  5BPL A;  3LDP A;  4CQK A;  1NGF A;  1CHZ A;  1OMY A;  2E3F A;  4H5T A;  1L4V A;  2ASC A;  1SEG A;  1BA0 A;  1MR4 A;  3C7N B;  3E7R L;  4UAE F;  2E2F A;  1NGC A;  5FPM A;  5AQR A;  2QWL A;  1BMR A;  1B7D A;  2BRZ A;  2GMO A;  2QWQ A;  1T1T A;  1NGH A;  3AY9 A;  3C7N A;  3LDN A;  5BPM A;  2N2Q A;  3CQX A;  2KHO A;  3PSM A;  5AQF A;  1NGA A;  2V7Z A;  5BN8 A;  2LJ7 A;  1UGL A;  2NY9 X;  3KP0 A;  5AQS A;  1NGI A;  1T7E A;  1ZVG A;  5BN9 A;  2YIL A;  2E0H A;  1QQO A;  3GDQ A;  2QXL A;  3KC6 A;  1ZVE A;  2LY5 A;  4UJ0 A;  1QQN A;  1ZU3 A;  1KAX A;  1ZUT A;  1P00 A;  3I33 A;  1C55 A;  2LN8 A;  4V1D C;  3LDO A;  2MBK A;  4H5N A;  3FE1 A;  1BRZ A;  5AQG A;  2YC1 C;  4KBO A;  1I6G A;  2LT8 A;  5KK4 A;  1SNB A;  1C56 A;  3HSC A;  2KBK A;  5EXW A;  1LQQ A;  1MYN A;  1K8B A;  1S3X A;  1NH5 A;  1T7B A;  2QWM A;  1VNB A;  2JDQ D;  1BCG A; 
#chains in the Genus database with same CATH homology
 1CN2 A;  1NPI A;  1VNA A;  1B3C A;  1PTX A;  1NRA A;  1ZYW A;  2LKB A;  1GPS A;  2YEO A;  2M8B B;  1JXC A;  1WWN A;  1BK8 A;  1I2U A;  2KBH A;  2ATB A;  2KBJ A;  4AB0 A;  1LQI A;  4AEI A;  1DQ7 A;  1SN1 A;  2LY6 A;  1OZZ A;  1T0Z A;  2NY8 X;  2B3C A;  1LQH A;  4AAZ A;  1NRB A;  2LR3 A;  1I6F A;  1NE5 A;  2SN3 A;  1PE4 A;  2A7T A;  2KGQ A;  4KYP A;  1TI5 A;  1JKZ A;  2YBR C;  2KPY A;  2LJM A;  1ZYV A;  5CY0 A;  2MZ0 A;  1AHO A;  2GL1 A;  1SN4 A;  2KJA A;  2KSK A;  1KV0 A;  1ZFU A;  4HHF A;  2N69 A;  1GPT A;  1P0A A;  1ICA A;  3E7U X;  2N66 A;  4HE7 A;  2E3G A;  1N4N A;  2KYQ A;  2LI7 A;  1DJT A;  2N2R A;  1WMT A;  1T7A A;  2I61 A;  1JZB A;  1I2V A;  1FH3 A;  1WT7 A;  1AYJ A;  1PX9 A;  1JZA A;  2B68 A;  4CQK A;  1CHZ A;  1OMY A;  2E3F A;  1L4V A;  2ASC A;  1SEG A;  1MR4 A;  3E7R L;  1BMR A;  1B7D A;  2BRZ A;  1T1T A;  2N2Q A;  3PSM A;  2LJ7 A;  2NY9 X;  1T7E A;  1ZVG A;  2E0H A;  1ZVE A;  2LY5 A;  4UJ0 A;  1ZU3 A;  1ZUT A;  1P00 A;  1C55 A;  4V1D C;  1BRZ A;  2YC1 C;  1I6G A;  2LT8 A;  5KK4 A;  1SNB A;  1C56 A;  2KBK A;  1LQQ A;  1MYN A;  1NH5 A;  1T7B A;  1VNB A;  1BCG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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