4V1DC

Ternary complex among two human derived single chain antibody fragments and cn2 toxin from scorpion centruroides noxius.
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
65
structure length
65
Chain Sequence
b'KEGYLVDKNTGCKYECLKLGDNDYCLRECKQQYGKGAGGYCYAFACWCTHLYEQAIVWPLPNKRC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Optimal Neutralization of Centruroides Noxius Venom is Understood Through a Structural Complex between Two Antibody Fragments and the Cn2 Toxin.
pubmed doi rcsb
molecule keywords SINGLE CHAIN ANTIBODY FRAGMENT LR, HEAVY CHAIN
source organism Homo sapiens
molecule tags Toxin/immune system
total genus 11
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2014-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4v1dC00
2N66A 1N4NA 1C56A 1B7DA 1VNBA 1CN2A 2N69A 1I6GA 1WMTA 1PTXA 2B68A 1OMYA 1T7BA 2KBHA 2ATBA 1GPSA 2M8BB 4AEIA 1ZYWA 2E3GA 4V1DC 1BK8A 5CY0A 1T7AA 1DQ7A 1ZUTA 1NRBA 1T1TA 2I61A 2KJAA 4UJ0A 1I2UA 2N2QA 1LQQA 1ZVGA 1PX9A 1GPTA 2LI7A 2LKBA 1TI5A 1AHOA 1P00A 1ZFUA 1FH3A 1ICAA 1BCGA 4HHFA 1B3CA 1LQHA 1SEGA 2LT8A 2KPYA 2A7TA 1CHZA 1NRAA 1WT7A 1NH5A 1JKZA 1L4VA 1JZAA 1T7EA 2NY9X 4KYPA 1I6FA 2ASCA 1ZU3A 1JXCA 1LQIA 2LY6A 3E7RL 4CQKA 1VNAA 2YEOA 4HE7A 2LR3A 2NY8X 5KK4A 1AYJA 4AB0A 1DJTA 1JZBA 2E3FA 2KSKA 1MR4A 1MYNA 2KBKA 2KGQA 2LY5A 2YBRC 1BMRA 1T0ZA 1PE4A 1P0AA 2SN3A 1KV0A 2N2RA 1C55A 1ZYVA 1ZVEA 3PSMA 2LJMA 1OZZA 2E0HA 2GL1A 1NPIA 1WWNA 2KYQA 1I2VA 2B3CA 1NE5A 1SN1A 4AAZA 1SNBA 2YC1C 1SN4A 2LJ7A 1BRZA 2KBJA 2BRZA 2MZ0A 3E7UX
chains in the Genus database with same CATH superfamily
2N66A 1N4NA 1C56A 1B7DA 3JXUA 3AY9A 1VNBA 3D2EB 3R2VA 2QWRA 2D56A 1CN2A 2N69A 2LN8A 1I6GA 1WMTA 3D2EA 1PTXA 3FZLA 2B68A 4H5VA 1KAYA 5AQZA 1OMYA 1T7BA 2KBHA 3KP0A 1BA1A 1UGLA 2ATBA 3KHWA 1GPSA 2M8BB 1KAZA 4AEIA 3HSCA 1ZYWA 2GMOA 2E3GA 3L56A 5AQMA 5AQGA 1S3XA 1NGDA 5AQQA 2BUPA 4V1DC 5AQIA 3SF4D 4FSVA 3GDQA 1QQOA 2QWOA 3FZFA 5CY0A 1BK8A 3C7NB 1T7AA 4FL9A 1DQ7A 1ZUTA 3KOYA 2KHOA 5AQKA 3C7NA 1NRBA 5AQLA 1T1TA 1HPMA 2I61A 2KJAA 3CQXA 4UJ0A 1I2UA 2N2QA 1NGFA 3GKUA 5AQWA 1BUPA 1LQQA 1ZVGA 3L4IA 1PX9A 5AQOA 1GPTA 1NGAA 5AQNA 2LI7A 2LKBA 2YILA 5F0XA 1TI5A 1AHOA 3ATUA 5AQRA 1P00A 5AQFA 1ZFUA 1FH3A 1KAXA 1NGCA 3KC6A 4UAFE 2MN5A 1ICAA 1BCGA 3ATVA 3FZHA 3FZKA 5AR0A 5AQUA 4HHFA 1B3CA 1LQHA 5AQVA 1SEGA 1NGHA 2QXLA 3L6QA 2MBKA 2LT8A 3LDPA 4GNIA 4H5NA 2KPYA 2A7TA 1CHZA 5AQHA 3KOXA 1NRAA 3LDNA 3KOWA 1WT7A 5F1XA 1NGEA 1NH5A 1NGIA 1JKZA 1L4VA 1JZAA 2E8AA 3I33A 5EVZA 5EXWA 5BN9A 1NGBA 3QFPA 1T7EA 5BN8A 4HWIA 3LDQA 2NY9X 3GL1A 4KYPA 4UADE 5FPEA 5FPDA 1I6FA 2ASCA 1ZU3A 2QWQA 1NGJA 1JXCA 1LQIA 3QFUA 2LY6A 3E7RL 3D2FB 1VNAA 4UAEF 4CQKA 1ATSA 1HX1A 2YEOA 4H5TA 2LR3A 4HE7A 3IUCA 2NY8X 2YIOA 5KK4A 3D2FA 3M3ZA 2QW9A 5EX5A 1AYJA 3CW4A 5AQTA 2YIPA 1QQNA 2V7ZA 4AB0A 1DJTA 1XRSB 3QMLA 1JZBA 4IO8A 5AQYA 1ATRA 2E3FA 2KSKA 1MR4A 2QWPA 5FPNA 1MYNA 3BK3C 5AQXA 2KBKA 2KGQA 2LY5A 2YBRC 2K35A 3A8YA 3FE1A 1NGGA 2VY6A 3KOZA 5AQSA 5F2RA 2E2FA 1BMRA 1T0ZA 3KP1A 5AQJA 2QWNA 1BA0A 1PE4A 5EY4A 1P0AA 2SN3A 1QQMA 1HJOA 3QI7A 1KV0A 2N2RA 5AQPA 1C55A 1ZYVA 3LDLA 5BPMA 1K8BA 1ZVEA 4H5RA 3PSMA 5BPLA 2LJMA 1OZZA 2E0HA 2GL1A 1POIA 1DKGD 5BPNA 1NPIA 1WWNA 2KYQA 1I2VA 2E88A 1YUWA 2QWLA 4KBOA 2B3CA 1NE5A 1SN1A 3LDOA 5FPMA 4AAZA 1SNBA 2JDQD 2G2KA 2YC1C 1SN4A 2LJ7A 4H5WA 1BRZA 2KBJA 2QWMA 2BRZA 3FZMA 2MZ0A 3KVGA 3E7UX
chains in the Genus database with same CATH topology
2N66A 1N4NA 1C56A 1B7DA 1VNBA 1CN2A 2N69A 1I6GA 1WMTA 1PTXA 2B68A 1OMYA 1T7BA 2KBHA 2ATBA 1GPSA 2M8BB 4AEIA 1ZYWA 2E3GA 4V1DC 1BK8A 5CY0A 1T7AA 1DQ7A 1ZUTA 1NRBA 1T1TA 2I61A 2KJAA 4UJ0A 1I2UA 2N2QA 1LQQA 1ZVGA 1PX9A 1GPTA 2LI7A 2LKBA 1TI5A 1AHOA 1P00A 1ZFUA 1FH3A 1ICAA 1BCGA 4HHFA 1B3CA 1LQHA 1SEGA 2LT8A 2KPYA 2A7TA 1CHZA 1NRAA 1WT7A 1NH5A 1JKZA 1L4VA 1JZAA 1T7EA 2NY9X 4KYPA 1I6FA 2ASCA 1ZU3A 1JXCA 1LQIA 2LY6A 3E7RL 4CQKA 1VNAA 2YEOA 4HE7A 2LR3A 2NY8X 5KK4A 1AYJA 4AB0A 1DJTA 1JZBA 2E3FA 2KSKA 1MR4A 1MYNA 2KBKA 2KGQA 2LY5A 2YBRC 1BMRA 1T0ZA 1PE4A 1P0AA 2SN3A 1KV0A 2N2RA 1C55A 1ZYVA 1ZVEA 3PSMA 2LJMA 1OZZA 2E0HA 2GL1A 1NPIA 1WWNA 2KYQA 1I2VA 2B3CA 1NE5A 1SN1A 4AAZA 1SNBA 2YC1C 1SN4A 2LJ7A 1BRZA 2KBJA 2BRZA 2MZ0A 3E7UX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N66 A;  1N4N A;  1C56 A;  1B7D A;  1VNB A;  1CN2 A;  2N69 A;  1I6G A;  1WMT A;  1PTX A;  2B68 A;  1OMY A;  1T7B A;  2KBH A;  2ATB A;  1GPS A;  2M8B B;  4AEI A;  1ZYW A;  2E3G A;  4V1D C;  1BK8 A;  5CY0 A;  1T7A A;  1DQ7 A;  1ZUT A;  1NRB A;  1T1T A;  2I61 A;  2KJA A;  4UJ0 A;  1I2U A;  2N2Q A;  1LQQ A;  1ZVG A;  1PX9 A;  1GPT A;  2LI7 A;  2LKB A;  1TI5 A;  1AHO A;  1P00 A;  1ZFU A;  1FH3 A;  1ICA A;  1BCG A;  4HHF A;  1B3C A;  1LQH A;  1SEG A;  2LT8 A;  2KPY A;  2A7T A;  1CHZ A;  1NRA A;  1WT7 A;  1NH5 A;  1JKZ A;  1L4V A;  1JZA A;  1T7E A;  2NY9 X;  4KYP A;  1I6F A;  2ASC A;  1ZU3 A;  1JXC A;  1LQI A;  2LY6 A;  3E7R L;  4CQK A;  1VNA A;  2YEO A;  4HE7 A;  2LR3 A;  2NY8 X;  5KK4 A;  1AYJ A;  4AB0 A;  1DJT A;  1JZB A;  2E3F A;  2KSK A;  1MR4 A;  1MYN A;  2KBK A;  2KGQ A;  2LY5 A;  2YBR C;  1BMR A;  1T0Z A;  1PE4 A;  1P0A A;  2SN3 A;  1KV0 A;  2N2R A;  1C55 A;  1ZYV A;  1ZVE A;  3PSM A;  2LJM A;  1OZZ A;  2E0H A;  2GL1 A;  1NPI A;  1WWN A;  2KYQ A;  1I2V A;  2B3C A;  1NE5 A;  1SN1 A;  4AAZ A;  1SNB A;  2YC1 C;  1SN4 A;  2LJ7 A;  1BRZ A;  2KBJ A;  2BRZ A;  2MZ0 A;  3E7U X; 
#chains in the Genus database with same CATH topology
 2N66 A;  1N4N A;  1C56 A;  1B7D A;  3JXU A;  3AY9 A;  1VNB A;  3D2E B;  3R2V A;  2QWR A;  2D56 A;  1CN2 A;  2N69 A;  2LN8 A;  1I6G A;  1WMT A;  3D2E A;  1PTX A;  3FZL A;  2B68 A;  4H5V A;  1KAY A;  5AQZ A;  1OMY A;  1T7B A;  2KBH A;  3KP0 A;  1BA1 A;  1UGL A;  2ATB A;  3KHW A;  1GPS A;  2M8B B;  1KAZ A;  4AEI A;  3HSC A;  1ZYW A;  2GMO A;  2E3G A;  3L56 A;  5AQM A;  5AQG A;  1S3X A;  1NGD A;  5AQQ A;  2BUP A;  4V1D C;  5AQI A;  3SF4 D;  4FSV A;  3GDQ A;  1QQO A;  2QWO A;  3FZF A;  5CY0 A;  1BK8 A;  3C7N B;  1T7A A;  4FL9 A;  1DQ7 A;  1ZUT A;  3KOY A;  2KHO A;  5AQK A;  3C7N A;  1NRB A;  5AQL A;  1T1T A;  1HPM A;  2I61 A;  2KJA A;  3CQX A;  4UJ0 A;  1I2U A;  2N2Q A;  1NGF A;  3GKU A;  5AQW A;  1BUP A;  1LQQ A;  1ZVG A;  3L4I A;  1PX9 A;  5AQO A;  1GPT A;  1NGA A;  5AQN A;  2LI7 A;  2LKB A;  2YIL A;  5F0X A;  1TI5 A;  1AHO A;  3ATU A;  5AQR A;  1P00 A;  5AQF A;  1ZFU A;  1FH3 A;  1KAX A;  1NGC A;  3KC6 A;  4UAF E;  2MN5 A;  1ICA A;  1BCG A;  3ATV A;  3FZH A;  3FZK A;  5AR0 A;  5AQU A;  4HHF A;  1B3C A;  1LQH A;  5AQV A;  1SEG A;  1NGH A;  2QXL A;  3L6Q A;  2MBK A;  2LT8 A;  3LDP A;  4GNI A;  4H5N A;  2KPY A;  2A7T A;  1CHZ A;  5AQH A;  3KOX A;  1NRA A;  3LDN A;  3KOW A;  1WT7 A;  5F1X A;  1NGE A;  1NH5 A;  1NGI A;  1JKZ A;  1L4V A;  1JZA A;  2E8A A;  3I33 A;  5EVZ A;  5EXW A;  5BN9 A;  1NGB A;  3QFP A;  1T7E A;  5BN8 A;  4HWI A;  3LDQ A;  2NY9 X;  3GL1 A;  4KYP A;  4UAD E;  5FPE A;  5FPD A;  1I6F A;  2ASC A;  1ZU3 A;  2QWQ A;  1NGJ A;  1JXC A;  1LQI A;  3QFU A;  2LY6 A;  3E7R L;  3D2F B;  1VNA A;  4UAE F;  4CQK A;  1ATS A;  1HX1 A;  2YEO A;  4H5T A;  2LR3 A;  4HE7 A;  3IUC A;  2NY8 X;  2YIO A;  5KK4 A;  3D2F A;  3M3Z A;  2QW9 A;  5EX5 A;  1AYJ A;  3CW4 A;  5AQT A;  2YIP A;  1QQN A;  2V7Z A;  4AB0 A;  1DJT A;  1XRS B;  3QML A;  1JZB A;  4IO8 A;  5AQY A;  1ATR A;  2E3F A;  2KSK A;  1MR4 A;  2QWP A;  5FPN A;  1MYN A;  3BK3 C;  5AQX A;  2KBK A;  2KGQ A;  2LY5 A;  2YBR C;  2K35 A;  3A8Y A;  3FE1 A;  1NGG A;  2VY6 A;  3KOZ A;  5AQS A;  5F2R A;  2E2F A;  1BMR A;  1T0Z A;  3KP1 A;  5AQJ A;  2QWN A;  1BA0 A;  1PE4 A;  5EY4 A;  1P0A A;  2SN3 A;  1QQM A;  1HJO A;  3QI7 A;  1KV0 A;  2N2R A;  5AQP A;  1C55 A;  1ZYV A;  3LDL A;  5BPM A;  1K8B A;  1ZVE A;  4H5R A;  3PSM A;  5BPL A;  2LJM A;  1OZZ A;  2E0H A;  2GL1 A;  1POI A;  1DKG D;  5BPN A;  1NPI A;  1WWN A;  2KYQ A;  1I2V A;  2E88 A;  1YUW A;  2QWL A;  4KBO A;  2B3C A;  1NE5 A;  1SN1 A;  3LDO A;  5FPM A;  4AAZ A;  1SNB A;  2JDQ D;  2G2K A;  2YC1 C;  1SN4 A;  2LJ7 A;  4H5W A;  1BRZ A;  2KBJ A;  2QWM A;  2BRZ A;  3FZM A;  2MZ0 A;  3KVG A;  3E7U X; 
#chains in the Genus database with same CATH homology
 2N66 A;  1N4N A;  1C56 A;  1B7D A;  1VNB A;  1CN2 A;  2N69 A;  1I6G A;  1WMT A;  1PTX A;  2B68 A;  1OMY A;  1T7B A;  2KBH A;  2ATB A;  1GPS A;  2M8B B;  4AEI A;  1ZYW A;  2E3G A;  4V1D C;  1BK8 A;  5CY0 A;  1T7A A;  1DQ7 A;  1ZUT A;  1NRB A;  1T1T A;  2I61 A;  2KJA A;  4UJ0 A;  1I2U A;  2N2Q A;  1LQQ A;  1ZVG A;  1PX9 A;  1GPT A;  2LI7 A;  2LKB A;  1TI5 A;  1AHO A;  1P00 A;  1ZFU A;  1FH3 A;  1ICA A;  1BCG A;  4HHF A;  1B3C A;  1LQH A;  1SEG A;  2LT8 A;  2KPY A;  2A7T A;  1CHZ A;  1NRA A;  1WT7 A;  1NH5 A;  1JKZ A;  1L4V A;  1JZA A;  1T7E A;  2NY9 X;  4KYP A;  1I6F A;  2ASC A;  1ZU3 A;  1JXC A;  1LQI A;  2LY6 A;  3E7R L;  4CQK A;  1VNA A;  2YEO A;  4HE7 A;  2LR3 A;  2NY8 X;  5KK4 A;  1AYJ A;  4AB0 A;  1DJT A;  1JZB A;  2E3F A;  2KSK A;  1MR4 A;  1MYN A;  2KBK A;  2KGQ A;  2LY5 A;  2YBR C;  1BMR A;  1T0Z A;  1PE4 A;  1P0A A;  2SN3 A;  1KV0 A;  2N2R A;  1C55 A;  1ZYV A;  1ZVE A;  3PSM A;  2LJM A;  1OZZ A;  2E0H A;  2GL1 A;  1NPI A;  1WWN A;  2KYQ A;  1I2V A;  2B3C A;  1NE5 A;  1SN1 A;  4AAZ A;  1SNB A;  2YC1 C;  1SN4 A;  2LJ7 A;  1BRZ A;  2KBJ A;  2BRZ A;  2MZ0 A;  3E7U X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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