3KC6A

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)
Total Genus 56
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
200
structure length
198
Chain Sequence
NGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Polymerase PB2
publication title Biological and structural characterization of a host-adapting amino acid in influenza virus.
pubmed doi rcsb
source organism Influenza a virus (a/viet nam/1203/2004(h5n1))
total genus 56
structure length 198
sequence length 200
ec nomenclature
pdb deposition date 2009-10-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3kc6A02
4UAFE 2JDQD 3L56A 3KC6A 3KHWA 2GMOA 2VY6A 3CW4A 3R2VA 4UAEF 4UADE
chains in the Genus database with same CATH superfamily
3D2EB 3IUCA 4UAFE 5AQXA 3L56A 5AQJA 2SN3A 1ZU3A 5AQFA 1BMRA 1L4VA 1N4NA 4V1DC 2KBHA 1SN1A 1I2UA 5AQQA 5AQWA 2E3FA 5AQRA 3KP0A 2LJMA 3JXUA 1KAXA 2KYQA 5BPMA 3I33A 3KVGA 1BK8A 5FPNA 1ATRA 4H5WA 2YIPA 4HWIA 3E7UX 3D2FB 5F2RA 1DKGD 3HSCA 2ATBA 5AQTA 2LN8A 2YEOA 4H5TA 1ZVEA 2NY8X 2E0HA 5BN9A 3C7NA 1JZBA 2QWQA 4AB0A 4AEIA 1OZZA 1VNAA 1JXCA 2QXLA 3CQXA 2MBKA 5AQUA 3FE1A 3L6QA 2NY9X 1T7AA 4AAZA 1ZYVA 5EXWA 1MR4A 2KHOA 5EX5A 1K8BA 1NGDA 5BPLA 2QWLA 3L4IA 2LY5A 2VY6A 2M8BB 2YC1C 3LDLA 4FL9A 5FPEA 5BPNA 2QWPA 3SF4D 1C55A 2ASCA 3BK3C 5AQGA 3ATVA 2E2FA 2JDQD 1NE5A 1QQOA 2I61A 4UJ0A 1HJOA 1UGLA 3D2EA 5AQZA 3QFUA 3FZHA 5CY0A 1P0AA 5AQSA 1B7DA 3FZLA 1QQNA 2LY6A 2YBRC 1XRSB 1PX9A 2QWOA 5AQNA 1NGFA 2LT8A 1P00A 2E3GA 1KV0A 3CW4A 3LDQA 3R2VA 1MYNA 1AHOA 4UAEF 1ZVGA 3GL1A 1I6FA 5F0XA 3FZKA 3KOWA 1WMTA 5AR0A 2QWMA 1JZAA 3D2FA 1ZUTA 2LR3A 1T1TA 2YILA 5AQYA 5KK4A 1AYJA 1NGCA 1PE4A 1KAZA 1BA1A 4FSVA 3KC6A 1I6GA 1GPTA 4H5VA 1LQHA 2KJAA 4KYPA 5EVZA 1YUWA 2B3CA 2E8AA 1CN2A 1ICAA 1NPIA 2K35A 3KP1A 3KOXA 1LQIA 1I2VA 1SNBA 3ATUA 2KBJA 2LJ7A 2GMOA 1BCGA 2N66A 2N2RA 1C56A 3LDOA 3QFPA 1JKZA 1HX1A 2LKBA 2V7ZA 2KSKA 2LI7A 3E7RL 3KOZA 2E88A 1NGHA 1LQQA 5AQPA 1BA0A 3AY9A 3QMLA 1WT7A 4GNIA 4IO8A 1KAYA 3KOYA 5AQHA 3A8YA 1BRZA 2KBKA 3LDPA 1S3XA 1POIA 1NGBA 1T7BA 3FZFA 5AQLA 1NH5A 1OMYA 1DJTA 2B68A 2QWRA 3PSMA 2KPYA 2QWNA 3QI7A 1VNBA 3M3ZA 1FH3A 1TI5A 5AQMA 1T7EA 1NGIA 5AQOA 3FZMA 3GDQA 3GKUA 3LDNA 1SEGA 1T0ZA 3KHWA 5AQVA 2QW9A 2G2KA 2MZ0A 3C7NB 5F1XA 1WWNA 1B3CA 1CHZA 1SN4A 2A7TA 4UADE 5BN8A 1ZYWA 1NGJA 2N69A 1DQ7A 4KBOA 5AQIA 2D56A 5FPMA 1NGEA 2GL1A 2BUPA 5EY4A 1HPMA 2KGQA 2YIOA 5AQKA 4CQKA 1NGGA 1ATSA 4HE7A 1PTXA 2N2QA 1NRAA 1QQMA 5FPDA 1BUPA 2MN5A 4HHFA 4H5NA 1GPSA 2BRZA 1NGAA 1NRBA 1ZFUA 4H5RA
chains in the Genus database with same CATH topology
3D2EB 3IUCA 4UAFE 5AQXA 3L56A 5AQJA 5AQFA 5AQQA 5AQWA 5AQRA 3JXUA 1KAXA 5BPMA 3I33A 3KVGA 5FPNA 1ATRA 4H5WA 2YIPA 4HWIA 5F2RA 3D2FB 3HSCA 1DKGD 5AQTA 2LN8A 4H5TA 5BN9A 3C7NA 2QWQA 2QXLA 3CQXA 5AQUA 2MBKA 3FE1A 3L6QA 5EXWA 2KHOA 5EX5A 1NGDA 5BPLA 2QWLA 3L4IA 2VY6A 3LDLA 4FL9A 5BPNA 2QWPA 3SF4D 3BK3C 5AQGA 3ATVA 2E2FA 2JDQD 1QQOA 1HJOA 3D2EA 5AQZA 3QFUA 3FZHA 5AQSA 3FZLA 1QQNA 2QWOA 5AQNA 1NGFA 3CW4A 3LDQA 3R2VA 4UAEF 3GL1A 5F0XA 3FZKA 5AR0A 2QWMA 3D2FA 2YILA 5AQYA 1NGCA 1KAZA 1BA1A 4FSVA 3KC6A 4H5VA 5EVZA 1YUWA 2E8AA 2K35A 3ATUA 5FPEA 2GMOA 3LDOA 3QFPA 1HX1A 2V7ZA 2E88A 1NGHA 5AQPA 1BA0A 3AY9A 3QMLA 4IO8A 4GNIA 1KAYA 5AQHA 3A8YA 3LDPA 1S3XA 1POIA 1NGBA 3FZFA 5AQLA 2QWRA 2QWNA 3QI7A 3M3ZA 5AQMA 1NGIA 5AQOA 3FZMA 3GDQA 3LDNA 3KHWA 5AQVA 2QW9A 3C7NB 5F1XA 4UADE 5BN8A 1NGJA 4KBOA 5AQIA 2D56A 5FPMA 1NGEA 2BUPA 5EY4A 1HPMA 2YIOA 5AQKA 1NGGA 1ATSA 1QQMA 5FPDA 1BUPA 2MN5A 4H5NA 1NGAA 4H5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UAF E;  2JDQ D;  3L56 A;  3KC6 A;  3KHW A;  2GMO A;  2VY6 A;  3CW4 A;  3R2V A;  4UAE F;  4UAD E; 
#chains in the Genus database with same CATH topology
 3D2E B;  3IUC A;  4UAF E;  5AQX A;  3L56 A;  5AQJ A;  2SN3 A;  1ZU3 A;  5AQF A;  1BMR A;  1L4V A;  1N4N A;  4V1D C;  2KBH A;  1SN1 A;  1I2U A;  5AQQ A;  5AQW A;  2E3F A;  5AQR A;  3KP0 A;  2LJM A;  3JXU A;  1KAX A;  2KYQ A;  5BPM A;  3I33 A;  3KVG A;  1BK8 A;  5FPN A;  1ATR A;  4H5W A;  2YIP A;  4HWI A;  3E7U X;  3D2F B;  5F2R A;  1DKG D;  3HSC A;  2ATB A;  5AQT A;  2LN8 A;  2YEO A;  4H5T A;  1ZVE A;  2NY8 X;  2E0H A;  5BN9 A;  3C7N A;  1JZB A;  2QWQ A;  4AB0 A;  4AEI A;  1OZZ A;  1VNA A;  1JXC A;  2QXL A;  3CQX A;  2MBK A;  5AQU A;  3FE1 A;  3L6Q A;  2NY9 X;  1T7A A;  4AAZ A;  1ZYV A;  5EXW A;  1MR4 A;  2KHO A;  5EX5 A;  1K8B A;  1NGD A;  5BPL A;  2QWL A;  3L4I A;  2LY5 A;  2VY6 A;  2M8B B;  2YC1 C;  3LDL A;  4FL9 A;  5FPE A;  5BPN A;  2QWP A;  3SF4 D;  1C55 A;  2ASC A;  3BK3 C;  5AQG A;  3ATV A;  2E2F A;  2JDQ D;  1NE5 A;  1QQO A;  2I61 A;  4UJ0 A;  1HJO A;  1UGL A;  3D2E A;  5AQZ A;  3QFU A;  3FZH A;  5CY0 A;  1P0A A;  5AQS A;  1B7D A;  3FZL A;  1QQN A;  2LY6 A;  2YBR C;  1XRS B;  1PX9 A;  2QWO A;  5AQN A;  1NGF A;  2LT8 A;  1P00 A;  2E3G A;  1KV0 A;  3CW4 A;  3LDQ A;  3R2V A;  1MYN A;  1AHO A;  4UAE F;  1ZVG A;  3GL1 A;  1I6F A;  5F0X A;  3FZK A;  3KOW A;  1WMT A;  5AR0 A;  2QWM A;  1JZA A;  3D2F A;  1ZUT A;  2LR3 A;  1T1T A;  2YIL A;  5AQY A;  5KK4 A;  1AYJ A;  1NGC A;  1PE4 A;  1KAZ A;  1BA1 A;  4FSV A;  3KC6 A;  1I6G A;  1GPT A;  4H5V A;  1LQH A;  2KJA A;  4KYP A;  5EVZ A;  1YUW A;  2B3C A;  2E8A A;  1CN2 A;  1ICA A;  1NPI A;  2K35 A;  3KP1 A;  3KOX A;  1LQI A;  1I2V A;  1SNB A;  3ATU A;  2KBJ A;  2LJ7 A;  2GMO A;  1BCG A;  2N66 A;  2N2R A;  1C56 A;  3LDO A;  3QFP A;  1JKZ A;  1HX1 A;  2LKB A;  2V7Z A;  2KSK A;  2LI7 A;  3E7R L;  3KOZ A;  2E88 A;  1NGH A;  1LQQ A;  5AQP A;  1BA0 A;  3AY9 A;  3QML A;  1WT7 A;  4GNI A;  4IO8 A;  1KAY A;  3KOY A;  5AQH A;  3A8Y A;  1BRZ A;  2KBK A;  3LDP A;  1S3X A;  1POI A;  1NGB A;  1T7B A;  3FZF A;  5AQL A;  1NH5 A;  1OMY A;  1DJT A;  2B68 A;  2QWR A;  3PSM A;  2KPY A;  2QWN A;  3QI7 A;  1VNB A;  3M3Z A;  1FH3 A;  1TI5 A;  5AQM A;  1T7E A;  1NGI A;  5AQO A;  3FZM A;  3GDQ A;  3GKU A;  3LDN A;  1SEG A;  1T0Z A;  3KHW A;  5AQV A;  2QW9 A;  2G2K A;  2MZ0 A;  3C7N B;  5F1X A;  1WWN A;  1B3C A;  1CHZ A;  1SN4 A;  2A7T A;  4UAD E;  5BN8 A;  1ZYW A;  1NGJ A;  2N69 A;  1DQ7 A;  4KBO A;  5AQI A;  2D56 A;  5FPM A;  1NGE A;  2GL1 A;  2BUP A;  5EY4 A;  1HPM A;  2KGQ A;  2YIO A;  5AQK A;  4CQK A;  1NGG A;  1ATS A;  4HE7 A;  1PTX A;  2N2Q A;  1NRA A;  1QQM A;  5FPD A;  1BUP A;  2MN5 A;  4HHF A;  4H5N A;  1GPS A;  2BRZ A;  1NGA A;  1NRB A;  1ZFU A;  4H5R A; 
#chains in the Genus database with same CATH homology
 3D2E B;  3IUC A;  4UAF E;  5AQX A;  3L56 A;  5AQJ A;  5AQF A;  5AQQ A;  5AQW A;  5AQR A;  3JXU A;  1KAX A;  5BPM A;  3I33 A;  3KVG A;  5FPN A;  1ATR A;  4H5W A;  2YIP A;  4HWI A;  5F2R A;  3D2F B;  3HSC A;  1DKG D;  5AQT A;  2LN8 A;  4H5T A;  5BN9 A;  3C7N A;  2QWQ A;  2QXL A;  3CQX A;  5AQU A;  2MBK A;  3FE1 A;  3L6Q A;  5EXW A;  2KHO A;  5EX5 A;  1NGD A;  5BPL A;  2QWL A;  3L4I A;  2VY6 A;  3LDL A;  4FL9 A;  5BPN A;  2QWP A;  3SF4 D;  3BK3 C;  5AQG A;  3ATV A;  2E2F A;  2JDQ D;  1QQO A;  1HJO A;  3D2E A;  5AQZ A;  3QFU A;  3FZH A;  5AQS A;  3FZL A;  1QQN A;  2QWO A;  5AQN A;  1NGF A;  3CW4 A;  3LDQ A;  3R2V A;  4UAE F;  3GL1 A;  5F0X A;  3FZK A;  5AR0 A;  2QWM A;  3D2F A;  2YIL A;  5AQY A;  1NGC A;  1KAZ A;  1BA1 A;  4FSV A;  3KC6 A;  4H5V A;  5EVZ A;  1YUW A;  2E8A A;  2K35 A;  3ATU A;  5FPE A;  2GMO A;  3LDO A;  3QFP A;  1HX1 A;  2V7Z A;  2E88 A;  1NGH A;  5AQP A;  1BA0 A;  3AY9 A;  3QML A;  4IO8 A;  4GNI A;  1KAY A;  5AQH A;  3A8Y A;  3LDP A;  1S3X A;  1POI A;  1NGB A;  3FZF A;  5AQL A;  2QWR A;  2QWN A;  3QI7 A;  3M3Z A;  5AQM A;  1NGI A;  5AQO A;  3FZM A;  3GDQ A;  3LDN A;  3KHW A;  5AQV A;  2QW9 A;  3C7N B;  5F1X A;  4UAD E;  5BN8 A;  1NGJ A;  4KBO A;  5AQI A;  2D56 A;  5FPM A;  1NGE A;  2BUP A;  5EY4 A;  1HPM A;  2YIO A;  5AQK A;  1NGG A;  1ATS A;  1QQM A;  5FPD A;  1BUP A;  2MN5 A;  4H5N A;  1NGA A;  4H5R A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...