1NRBA

Solution structure of an old world-like neurotoxin from the venom of the new world scorpion centruroides sculpturatus ewing
Total Genus 12
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
63
structure length
63
Chain Sequence
KKDGYPVDSGNCKYECLKDDYCNDLCLERKADKGYCYWGKVSCYCYGLPDNSPTKTSGKCNPA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Neurotoxin
molecule keywords NEUROTOXIN V, CSE-V
publication title Solution structure of an Old World-like neurotoxin from the venom of the New World scorpion Centruroides sculpturatus Ewing.
pubmed rcsb
source organism Centruroides sculpturatus
total genus 12
structure length 63
sequence length 63
ec nomenclature
pdb deposition date 1995-01-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1nrbA00
1NE5A 1LQIA 2A7TA 1ZYWA 1ICAA 2KBHA 4CQKA 1CN2A 1BK8A 1NH5A 1PE4A 1SN4A 1B7DA 4V1DC 2NY8X 3PSMA 1PTXA 2LY6A 2YC1C 1GPTA 1AYJA 1MR4A 1P0AA 2KSKA 2BRZA 2YEOA 1GPSA 1SNBA 1I6FA 1P00A 1PX9A 2LJ7A 4KYPA 2SN3A 1NRBA 2E0HA 1WMTA 2KGQA 4HE7A 4HHFA 1BMRA 1C56A 1CHZA 2M8BB 1BRZA 1I2UA 1ZU3A 1L4VA 1DQ7A 1SN1A 1JKZA 2ATBA 2KJAA 2N69A 5CY0A 1DJTA 1T7EA 1JZBA 1ZUTA 1ZYVA 2NY9X 1NRAA 2B3CA 2KPYA 2E3GA 1T7BA 1KV0A 1FH3A 1WT7A 2LR3A 1VNBA 1NPIA 4AB0A 2LKBA 2YBRC 2KBJA 4UJ0A 1N4NA 1T1TA 1T0ZA 2MZ0A 2ASCA 3E7RL 2LI7A 1OZZA 1VNAA 2KYQA 4AEIA 1LQQA 1ZFUA 1MYNA 1B3CA 2B68A 1JXCA 1I6GA 2N2RA 2GL1A 1AHOA 1JZAA 3E7UX 1LQHA 1C55A 5KK4A 1BCGA 2N66A 1ZVEA 1SEGA 1I2VA 2LJMA 4AAZA 2KBKA 2LT8A 2LY5A 1T7AA 2N2QA 1WWNA 1ZVGA 1OMYA 2E3FA 2I61A 1TI5A
chains in the Genus database with same CATH superfamily
2QWQA 1NE5A 1NGDA 1UGLA 3JXUA 4FSVA 5AQRA 2E8AA 1LQIA 3C7NB 2A7TA 1ZYWA 3D2EB 5FPEA 4HWIA 3FZHA 2D56A 5AQWA 2KBHA 1BA1A 4CQKA 2JDQD 1ICAA 1CN2A 1BK8A 5FPNA 1NGEA 1KAZA 1NH5A 1PE4A 3KP0A 5AQMA 3CW4A 1SN4A 1NGJA 2QWRA 1B7DA 4V1DC 2NY8X 2E88A 3PSMA 1BUPA 2LN8A 1PTXA 3QFUA 4H5TA 2LY6A 2YC1C 3FZKA 1GPTA 1AYJA 1MR4A 2YILA 4UAEF 1P0AA 2KSKA 2BRZA 3FZLA 3LDLA 5AQJA 5AQFA 2YEOA 1GPSA 1SNBA 1I6FA 1P00A 3KOXA 1NGIA 3LDQA 1K8BA 5AQGA 1PX9A 4KBOA 2LJ7A 1QQNA 3KHWA 4KYPA 5EX5A 2K35A 2SN3A 2VY6A 1NRBA 5AQLA 5AQVA 2E0HA 4UADE 1WMTA 1NGHA 3FZMA 1HJOA 2KGQA 4HE7A 4HHFA 5AQOA 3KOWA 2YIPA 5AQXA 1BMRA 1C56A 1NGAA 1CHZA 2MN5A 3QI7A 1NGBA 2M8BB 3KVGA 3C7NA 5BPMA 3D2EA 3L4IA 1BRZA 3HSCA 1I2UA 1ZU3A 4IO8A 5EXWA 5FPDA 1KAXA 2QWMA 3QFPA 1DQ7A 3GDQA 5AQKA 1L4VA 1SN1A 1JKZA 2ATBA 1S3XA 3D2FB 5AQYA 5EVZA 5EY4A 2E3FA 5AQIA 3SF4D 2KJAA 2N69A 1KAYA 5CY0A 1DJTA 1T7EA 1ATRA 2V7ZA 1JZBA 1ZUTA 1ZYVA 4H5VA 5AQTA 2NY9X 5FPMA 5AQZA 3FE1A 1NRAA 2B3CA 4H5RA 2KPYA 2E3GA 1T7BA 5AQSA 1KV0A 1FH3A 1WT7A 4UAFE 2LR3A 1VNBA 1NPIA 3CQXA 4GNIA 4AB0A 2LKBA 2QWOA 2YBRC 2KBJA 2G2KA 4UJ0A 1N4NA 3I33A 1T1TA 1T0ZA 2MZ0A 2ASCA 3E7RL 5AR0A 2LI7A 1OZZA 5BPLA 1HX1A 1VNAA 5AQQA 5BPNA 2KYQA 3L56A 3A8YA 1QQMA 1LQQA 4FL9A 4AEIA 2BUPA 2MBKA 3LDPA 5F1XA 5AQPA 1ZFUA 1BA0A 2QWLA 2GMOA 3GKUA 1MYNA 3L6QA 3QMLA 5F2RA 1QQOA 3KOZA 1NGCA 3FZFA 5AQNA 1B3CA 5AQUA 3AY9A 2QWPA 3LDOA 1JXCA 3IUCA 1I6GA 3GL1A 2N2RA 2QXLA 3ATVA 2GL1A 5BN8A 1AHOA 1JZAA 2KHOA 3E7UX 1LQHA 2YIOA 5BN9A 3R2VA 5KK4A 1C55A 1XRSB 1BCGA 1POIA 2N66A 1ZVEA 1SEGA 1I2VA 3D2FA 1NGGA 4H5NA 2QW9A 3KP1A 3ATUA 2LJMA 4AAZA 1YUWA 2E2FA 2KBKA 1DKGD 4H5WA 1ATSA 1NGFA 3LDNA 2LT8A 3BK3C 3KOYA 2LY5A 2QWNA 5F0XA 3M3ZA 1HPMA 1T7AA 2N2QA 1WWNA 1ZVGA 1OMYA 3KC6A 2B68A 5AQHA 2I61A 1TI5A
chains in the Genus database with same CATH topology
1NE5A 1LQIA 2A7TA 1ZYWA 1ICAA 2KBHA 4CQKA 1CN2A 1BK8A 1NH5A 1PE4A 1SN4A 1B7DA 4V1DC 2NY8X 3PSMA 1PTXA 2LY6A 2YC1C 1GPTA 1AYJA 1MR4A 1P0AA 2KSKA 2BRZA 2YEOA 1GPSA 1SNBA 1I6FA 1P00A 1PX9A 2LJ7A 4KYPA 2SN3A 1NRBA 2E0HA 1WMTA 2KGQA 4HE7A 4HHFA 1BMRA 1C56A 1CHZA 2M8BB 1BRZA 1I2UA 1ZU3A 1L4VA 1DQ7A 1SN1A 1JKZA 2ATBA 2KJAA 2N69A 5CY0A 1DJTA 1T7EA 1JZBA 1ZUTA 1ZYVA 2NY9X 1NRAA 2B3CA 2KPYA 2E3GA 1T7BA 1KV0A 1FH3A 1WT7A 2LR3A 1VNBA 1NPIA 4AB0A 2LKBA 2YBRC 2KBJA 4UJ0A 1N4NA 1T1TA 1T0ZA 2MZ0A 2ASCA 3E7RL 2LI7A 1OZZA 1VNAA 2KYQA 4AEIA 1LQQA 1ZFUA 1MYNA 1B3CA 2B68A 1JXCA 1I6GA 2N2RA 2GL1A 1AHOA 1JZAA 3E7UX 1LQHA 1C55A 5KK4A 1BCGA 2N66A 1ZVEA 1SEGA 1I2VA 2LJMA 4AAZA 2KBKA 2LT8A 2LY5A 1T7AA 2N2QA 1WWNA 1ZVGA 1OMYA 2E3FA 2I61A 1TI5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NE5 A;  1LQI A;  2A7T A;  1ZYW A;  1ICA A;  2KBH A;  4CQK A;  1CN2 A;  1BK8 A;  1NH5 A;  1PE4 A;  1SN4 A;  1B7D A;  4V1D C;  2NY8 X;  3PSM A;  1PTX A;  2LY6 A;  2YC1 C;  1GPT A;  1AYJ A;  1MR4 A;  1P0A A;  2KSK A;  2BRZ A;  2YEO A;  1GPS A;  1SNB A;  1I6F A;  1P00 A;  1PX9 A;  2LJ7 A;  4KYP A;  2SN3 A;  1NRB A;  2E0H A;  1WMT A;  2KGQ A;  4HE7 A;  4HHF A;  1BMR A;  1C56 A;  1CHZ A;  2M8B B;  1BRZ A;  1I2U A;  1ZU3 A;  1L4V A;  1DQ7 A;  1SN1 A;  1JKZ A;  2ATB A;  2KJA A;  2N69 A;  5CY0 A;  1DJT A;  1T7E A;  1JZB A;  1ZUT A;  1ZYV A;  2NY9 X;  1NRA A;  2B3C A;  2KPY A;  2E3G A;  1T7B A;  1KV0 A;  1FH3 A;  1WT7 A;  2LR3 A;  1VNB A;  1NPI A;  4AB0 A;  2LKB A;  2YBR C;  2KBJ A;  4UJ0 A;  1N4N A;  1T1T A;  1T0Z A;  2MZ0 A;  2ASC A;  3E7R L;  2LI7 A;  1OZZ A;  1VNA A;  2KYQ A;  4AEI A;  1LQQ A;  1ZFU A;  1MYN A;  1B3C A;  2B68 A;  1JXC A;  1I6G A;  2N2R A;  2GL1 A;  1AHO A;  1JZA A;  3E7U X;  1LQH A;  1C55 A;  5KK4 A;  1BCG A;  2N66 A;  1ZVE A;  1SEG A;  1I2V A;  2LJM A;  4AAZ A;  2KBK A;  2LT8 A;  2LY5 A;  1T7A A;  2N2Q A;  1WWN A;  1ZVG A;  1OMY A;  2E3F A;  2I61 A;  1TI5 A; 
#chains in the Genus database with same CATH topology
 2QWQ A;  1NE5 A;  1NGD A;  1UGL A;  3JXU A;  4FSV A;  5AQR A;  2E8A A;  1LQI A;  3C7N B;  2A7T A;  1ZYW A;  3D2E B;  5FPE A;  4HWI A;  3FZH A;  2D56 A;  5AQW A;  2KBH A;  1BA1 A;  4CQK A;  2JDQ D;  1ICA A;  1CN2 A;  1BK8 A;  5FPN A;  1NGE A;  1KAZ A;  1NH5 A;  1PE4 A;  3KP0 A;  5AQM A;  3CW4 A;  1SN4 A;  1NGJ A;  2QWR A;  1B7D A;  4V1D C;  2NY8 X;  2E88 A;  3PSM A;  1BUP A;  2LN8 A;  1PTX A;  3QFU A;  4H5T A;  2LY6 A;  2YC1 C;  3FZK A;  1GPT A;  1AYJ A;  1MR4 A;  2YIL A;  4UAE F;  1P0A A;  2KSK A;  2BRZ A;  3FZL A;  3LDL A;  5AQJ A;  5AQF A;  2YEO A;  1GPS A;  1SNB A;  1I6F A;  1P00 A;  3KOX A;  1NGI A;  3LDQ A;  1K8B A;  5AQG A;  1PX9 A;  4KBO A;  2LJ7 A;  1QQN A;  3KHW A;  4KYP A;  5EX5 A;  2K35 A;  2SN3 A;  2VY6 A;  1NRB A;  5AQL A;  5AQV A;  2E0H A;  4UAD E;  1WMT A;  1NGH A;  3FZM A;  1HJO A;  2KGQ A;  4HE7 A;  4HHF A;  5AQO A;  3KOW A;  2YIP A;  5AQX A;  1BMR A;  1C56 A;  1NGA A;  1CHZ A;  2MN5 A;  3QI7 A;  1NGB A;  2M8B B;  3KVG A;  3C7N A;  5BPM A;  3D2E A;  3L4I A;  1BRZ A;  3HSC A;  1I2U A;  1ZU3 A;  4IO8 A;  5EXW A;  5FPD A;  1KAX A;  2QWM A;  3QFP A;  1DQ7 A;  3GDQ A;  5AQK A;  1L4V A;  1SN1 A;  1JKZ A;  2ATB A;  1S3X A;  3D2F B;  5AQY A;  5EVZ A;  5EY4 A;  2E3F A;  5AQI A;  3SF4 D;  2KJA A;  2N69 A;  1KAY A;  5CY0 A;  1DJT A;  1T7E A;  1ATR A;  2V7Z A;  1JZB A;  1ZUT A;  1ZYV A;  4H5V A;  5AQT A;  2NY9 X;  5FPM A;  5AQZ A;  3FE1 A;  1NRA A;  2B3C A;  4H5R A;  2KPY A;  2E3G A;  1T7B A;  5AQS A;  1KV0 A;  1FH3 A;  1WT7 A;  4UAF E;  2LR3 A;  1VNB A;  1NPI A;  3CQX A;  4GNI A;  4AB0 A;  2LKB A;  2QWO A;  2YBR C;  2KBJ A;  2G2K A;  4UJ0 A;  1N4N A;  3I33 A;  1T1T A;  1T0Z A;  2MZ0 A;  2ASC A;  3E7R L;  5AR0 A;  2LI7 A;  1OZZ A;  5BPL A;  1HX1 A;  1VNA A;  5AQQ A;  5BPN A;  2KYQ A;  3L56 A;  3A8Y A;  1QQM A;  1LQQ A;  4FL9 A;  4AEI A;  2BUP A;  2MBK A;  3LDP A;  5F1X A;  5AQP A;  1ZFU A;  1BA0 A;  2QWL A;  2GMO A;  3GKU A;  1MYN A;  3L6Q A;  3QML A;  5F2R A;  1QQO A;  3KOZ A;  1NGC A;  3FZF A;  5AQN A;  1B3C A;  5AQU A;  3AY9 A;  2QWP A;  3LDO A;  1JXC A;  3IUC A;  1I6G A;  3GL1 A;  2N2R A;  2QXL A;  3ATV A;  2GL1 A;  5BN8 A;  1AHO A;  1JZA A;  2KHO A;  3E7U X;  1LQH A;  2YIO A;  5BN9 A;  3R2V A;  5KK4 A;  1C55 A;  1XRS B;  1BCG A;  1POI A;  2N66 A;  1ZVE A;  1SEG A;  1I2V A;  3D2F A;  1NGG A;  4H5N A;  2QW9 A;  3KP1 A;  3ATU A;  2LJM A;  4AAZ A;  1YUW A;  2E2F A;  2KBK A;  1DKG D;  4H5W A;  1ATS A;  1NGF A;  3LDN A;  2LT8 A;  3BK3 C;  3KOY A;  2LY5 A;  2QWN A;  5F0X A;  3M3Z A;  1HPM A;  1T7A A;  2N2Q A;  1WWN A;  1ZVG A;  1OMY A;  3KC6 A;  2B68 A;  5AQH A;  2I61 A;  1TI5 A; 
#chains in the Genus database with same CATH homology
 1NE5 A;  1LQI A;  2A7T A;  1ZYW A;  1ICA A;  2KBH A;  4CQK A;  1CN2 A;  1BK8 A;  1NH5 A;  1PE4 A;  1SN4 A;  1B7D A;  4V1D C;  2NY8 X;  3PSM A;  1PTX A;  2LY6 A;  2YC1 C;  1GPT A;  1AYJ A;  1MR4 A;  1P0A A;  2KSK A;  2BRZ A;  2YEO A;  1GPS A;  1SNB A;  1I6F A;  1P00 A;  1PX9 A;  2LJ7 A;  4KYP A;  2SN3 A;  1NRB A;  2E0H A;  1WMT A;  2KGQ A;  4HE7 A;  4HHF A;  1BMR A;  1C56 A;  1CHZ A;  2M8B B;  1BRZ A;  1I2U A;  1ZU3 A;  1L4V A;  1DQ7 A;  1SN1 A;  1JKZ A;  2ATB A;  2KJA A;  2N69 A;  5CY0 A;  1DJT A;  1T7E A;  1JZB A;  1ZUT A;  1ZYV A;  2NY9 X;  1NRA A;  2B3C A;  2KPY A;  2E3G A;  1T7B A;  1KV0 A;  1FH3 A;  1WT7 A;  2LR3 A;  1VNB A;  1NPI A;  4AB0 A;  2LKB A;  2YBR C;  2KBJ A;  4UJ0 A;  1N4N A;  1T1T A;  1T0Z A;  2MZ0 A;  2ASC A;  3E7R L;  2LI7 A;  1OZZ A;  1VNA A;  2KYQ A;  4AEI A;  1LQQ A;  1ZFU A;  1MYN A;  1B3C A;  2B68 A;  1JXC A;  1I6G A;  2N2R A;  2GL1 A;  1AHO A;  1JZA A;  3E7U X;  1LQH A;  1C55 A;  5KK4 A;  1BCG A;  2N66 A;  1ZVE A;  1SEG A;  1I2V A;  2LJM A;  4AAZ A;  2KBK A;  2LT8 A;  2LY5 A;  1T7A A;  2N2Q A;  1WWN A;  1ZVG A;  1OMY A;  2E3F A;  2I61 A;  1TI5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...