2M8BB

Solution structure of ahpdf1 from arabidopsis halleri
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
ERLCEKPSGTWSGVCGNNGACRNQCIRLEKARHGSCNYVFPAHKCICYFPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords plant defensin PDF1.1
publication title The nuclear magnetic resonance solution structure of the synthetic AhPDF1.1b plant defensin evidences the structural feature within the gamma-motif.
pubmed doi rcsb
source organism Arabidopsis halleri
total genus 12
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2013-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2m8bB00
1ICAA 4HE7A 2SN3A 1NRAA 3E7UX 1BCGA 1MYNA 1OMYA 2KGQA 1GPSA 3PSMA 1CHZA 4HHFA 4KYPA 2LY5A 1C55A 1N4NA 5CY0A 2YEOA 1C56A 1NH5A 1SEGA 1T7EA 2KBHA 2LJMA 1VNAA 1JKZA 1JXCA 2LI7A 1JZAA 4AEIA 2MZ0A 1JZBA 1ZFUA 1P00A 2BRZA 2YBRC 2I61A 2N2RA 4AAZA 1BRZA 2KBKA 1FH3A 1ZVEA 5KK4A 2NY9X 1BMRA 1CN2A 1T7AA 2ATBA 2E3FA 2N69A 1I6GA 2N2QA 4UJ0A 1NRBA 1I2UA 1GPTA 1SN1A 2KBJA 1PTXA 1ZVGA 1AHOA 1OZZA 1SNBA 1ZUTA 1KV0A 2YC1C 2NY8X 2KSKA 2ASCA 1B3CA 1ZYVA 2B68A 2KJAA 1T1TA 1TI5A 2LT8A 2KPYA 4AB0A 1PX9A 1WMTA 1NPIA 1LQHA 1I2VA 2GL1A 2N66A 2LR3A 1P0AA 1LQQA 1T7BA 2LJ7A 1DJTA 1NE5A 1ZU3A 3E7RL 1B7DA 2B3CA 2E3GA 1DQ7A 2E0HA 4CQKA 2LKBA 1VNBA 1SN4A 1WWNA 2LY6A 2A7TA 4V1DC 2KYQA 1MR4A 2M8BB 1L4VA 1PE4A 1LQIA 1T0ZA 1WT7A 1AYJA 1I6FA 1ZYWA 1BK8A
chains in the Genus database with same CATH superfamily
1UGLA 5AQIA 1BUPA 2QWRA 1GPSA 1ICAA 4HE7A 5AQNA 1S3XA 3LDPA 5BPLA 2QWPA 4H5RA 2SN3A 3D2FB 3JXUA 1NRAA 3E7UX 3LDQA 1BCGA 3LDLA 4IO8A 1MYNA 5F2RA 1OMYA 2KGQA 5AQOA 1NGIA 1CHZA 3C7NA 3PSMA 2LY5A 4HHFA 1N4NA 1NGEA 1YUWA 4KYPA 5AR0A 4KBOA 5CY0A 5FPEA 3KOYA 2YEOA 1C56A 1NH5A 1SEGA 1T7EA 2KBHA 2LJMA 4UAEF 2QWLA 3A8YA 3I33A 4UAFE 1VNAA 1JKZA 1JXCA 1NGBA 1JZAA 2LI7A 1NGCA 4AEIA 1HPMA 2MZ0A 2YILA 5AQUA 4H5VA 3D2EB 3KC6A 1JZBA 1ZFUA 2QWOA 2YIOA 2D56A 1P00A 4GNIA 4H5WA 5AQVA 1DKGD 3FE1A 2BRZA 3GDQA 5AQXA 1NGFA 2QWQA 2YBRC 5EX5A 2YIPA 2I61A 2N2RA 1HJOA 4AAZA 1BRZA 2E8AA 2KBKA 3FZFA 5EY4A 3ATVA 3QFUA 1FH3A 1ZVEA 5KK4A 2NY9X 1BMRA 1CN2A 3QMLA 1T7AA 2ATBA 2E88A 5FPNA 2E3FA 2N69A 1QQNA 5BPMA 3D2EA 1ATRA 3QFPA 1NGJA 1NGGA 2N2QA 4UJ0A 1I6GA 1XRSB 1BA1A 3AY9A 1NRBA 1I2UA 2QW9A 5AQGA 5BN8A 1GPTA 1SN1A 1NGAA 5AQRA 3FZKA 4FSVA 3FZLA 3QI7A 2KBJA 2MBKA 1KAXA 3FZMA 1PTXA 3D2FA 1ZVGA 1AHOA 1OZZA 2MN5A 3CW4A 5AQHA 1KAZA 1SNBA 2BUPA 1K8BA 1ZUTA 2KHOA 1KV0A 5AQFA 2GMOA 5AQTA 2YC1C 5AQZA 2NY8X 5F0XA 5FPDA 2KSKA 3SF4D 2JDQD 5AQPA 5AQLA 2ASCA 5AQSA 4H5TA 4HWIA 1BA0A 5EXWA 1B3CA 1ZYVA 1QQOA 2B68A 2KJAA 3LDOA 1POIA 1T1TA 1TI5A 2KPYA 2LT8A 1NGHA 5AQMA 4AB0A 1PX9A 1WMTA 1NPIA 3KHWA 1LQHA 1I2VA 2GL1A 2N66A 2LR3A 3ATUA 1P0AA 1LQQA 3FZHA 3L56A 5AQQA 1NGDA 2QWNA 1T7BA 2LN8A 3GKUA 2E2FA 2K35A 3BK3C 2LJ7A 3L4IA 2V7ZA 5EVZA 1C55A 1DJTA 1NE5A 1ZU3A 3HSCA 3IUCA 2QXLA 3E7RL 3KOWA 4H5NA 1B7DA 2B3CA 3LDNA 5F1XA 3L6QA 2E3GA 5BPNA 1DQ7A 2E0HA 4CQKA 2LKBA 1KAYA 1SN4A 1VNBA 1WWNA 3KVGA 1QQMA 2LY6A 3M3ZA 5BN9A 3GL1A 2A7TA 4V1DC 2KYQA 3KP1A 1ATSA 1MR4A 2M8BB 3R2VA 1L4VA 2G2KA 1PE4A 5AQYA 2VY6A 4FL9A 4UADE 1HX1A 1LQIA 1T0ZA 3KOZA 5AQJA 5FPMA 3C7NB 1WT7A 3KP0A 3KOXA 1AYJA 5AQKA 2QWMA 3CQXA 5AQWA 1I6FA 1ZYWA 1BK8A
chains in the Genus database with same CATH topology
1ICAA 4HE7A 2SN3A 1NRAA 3E7UX 1BCGA 1MYNA 1OMYA 2KGQA 1GPSA 3PSMA 1CHZA 4HHFA 4KYPA 2LY5A 1C55A 1N4NA 5CY0A 2YEOA 1C56A 1NH5A 1SEGA 1T7EA 2KBHA 2LJMA 1VNAA 1JKZA 1JXCA 2LI7A 1JZAA 4AEIA 2MZ0A 1JZBA 1ZFUA 1P00A 2BRZA 2YBRC 2I61A 2N2RA 4AAZA 1BRZA 2KBKA 1FH3A 1ZVEA 5KK4A 2NY9X 1BMRA 1CN2A 1T7AA 2ATBA 2E3FA 2N69A 1I6GA 2N2QA 4UJ0A 1NRBA 1I2UA 1GPTA 1SN1A 2KBJA 1PTXA 1ZVGA 1AHOA 1OZZA 1SNBA 1ZUTA 1KV0A 2YC1C 2NY8X 2KSKA 2ASCA 1B3CA 1ZYVA 2B68A 2KJAA 1T1TA 1TI5A 2LT8A 2KPYA 4AB0A 1PX9A 1WMTA 1NPIA 1LQHA 1I2VA 2GL1A 2N66A 2LR3A 1P0AA 1LQQA 1T7BA 2LJ7A 1DJTA 1NE5A 1ZU3A 3E7RL 1B7DA 2B3CA 2E3GA 1DQ7A 2E0HA 4CQKA 2LKBA 1VNBA 1SN4A 1WWNA 2LY6A 2A7TA 4V1DC 2KYQA 1MR4A 2M8BB 1L4VA 1PE4A 1LQIA 1T0ZA 1WT7A 1AYJA 1I6FA 1ZYWA 1BK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ICA A;  4HE7 A;  2SN3 A;  1NRA A;  3E7U X;  1BCG A;  1MYN A;  1OMY A;  2KGQ A;  1GPS A;  3PSM A;  1CHZ A;  4HHF A;  4KYP A;  2LY5 A;  1C55 A;  1N4N A;  5CY0 A;  2YEO A;  1C56 A;  1NH5 A;  1SEG A;  1T7E A;  2KBH A;  2LJM A;  1VNA A;  1JKZ A;  1JXC A;  2LI7 A;  1JZA A;  4AEI A;  2MZ0 A;  1JZB A;  1ZFU A;  1P00 A;  2BRZ A;  2YBR C;  2I61 A;  2N2R A;  4AAZ A;  1BRZ A;  2KBK A;  1FH3 A;  1ZVE A;  5KK4 A;  2NY9 X;  1BMR A;  1CN2 A;  1T7A A;  2ATB A;  2E3F A;  2N69 A;  1I6G A;  2N2Q A;  4UJ0 A;  1NRB A;  1I2U A;  1GPT A;  1SN1 A;  2KBJ A;  1PTX A;  1ZVG A;  1AHO A;  1OZZ A;  1SNB A;  1ZUT A;  1KV0 A;  2YC1 C;  2NY8 X;  2KSK A;  2ASC A;  1B3C A;  1ZYV A;  2B68 A;  2KJA A;  1T1T A;  1TI5 A;  2LT8 A;  2KPY A;  4AB0 A;  1PX9 A;  1WMT A;  1NPI A;  1LQH A;  1I2V A;  2GL1 A;  2N66 A;  2LR3 A;  1P0A A;  1LQQ A;  1T7B A;  2LJ7 A;  1DJT A;  1NE5 A;  1ZU3 A;  3E7R L;  1B7D A;  2B3C A;  2E3G A;  1DQ7 A;  2E0H A;  4CQK A;  2LKB A;  1VNB A;  1SN4 A;  1WWN A;  2LY6 A;  2A7T A;  4V1D C;  2KYQ A;  1MR4 A;  2M8B B;  1L4V A;  1PE4 A;  1LQI A;  1T0Z A;  1WT7 A;  1AYJ A;  1I6F A;  1ZYW A;  1BK8 A; 
#chains in the Genus database with same CATH topology
 1UGL A;  5AQI A;  1BUP A;  2QWR A;  1GPS A;  1ICA A;  4HE7 A;  5AQN A;  1S3X A;  3LDP A;  5BPL A;  2QWP A;  4H5R A;  2SN3 A;  3D2F B;  3JXU A;  1NRA A;  3E7U X;  3LDQ A;  1BCG A;  3LDL A;  4IO8 A;  1MYN A;  5F2R A;  1OMY A;  2KGQ A;  5AQO A;  1NGI A;  1CHZ A;  3C7N A;  3PSM A;  2LY5 A;  4HHF A;  1N4N A;  1NGE A;  1YUW A;  4KYP A;  5AR0 A;  4KBO A;  5CY0 A;  5FPE A;  3KOY A;  2YEO A;  1C56 A;  1NH5 A;  1SEG A;  1T7E A;  2KBH A;  2LJM A;  4UAE F;  2QWL A;  3A8Y A;  3I33 A;  4UAF E;  1VNA A;  1JKZ A;  1JXC A;  1NGB A;  1JZA A;  2LI7 A;  1NGC A;  4AEI A;  1HPM A;  2MZ0 A;  2YIL A;  5AQU A;  4H5V A;  3D2E B;  3KC6 A;  1JZB A;  1ZFU A;  2QWO A;  2YIO A;  2D56 A;  1P00 A;  4GNI A;  4H5W A;  5AQV A;  1DKG D;  3FE1 A;  2BRZ A;  3GDQ A;  5AQX A;  1NGF A;  2QWQ A;  2YBR C;  5EX5 A;  2YIP A;  2I61 A;  2N2R A;  1HJO A;  4AAZ A;  1BRZ A;  2E8A A;  2KBK A;  3FZF A;  5EY4 A;  3ATV A;  3QFU A;  1FH3 A;  1ZVE A;  5KK4 A;  2NY9 X;  1BMR A;  1CN2 A;  3QML A;  1T7A A;  2ATB A;  2E88 A;  5FPN A;  2E3F A;  2N69 A;  1QQN A;  5BPM A;  3D2E A;  1ATR A;  3QFP A;  1NGJ A;  1NGG A;  2N2Q A;  4UJ0 A;  1I6G A;  1XRS B;  1BA1 A;  3AY9 A;  1NRB A;  1I2U A;  2QW9 A;  5AQG A;  5BN8 A;  1GPT A;  1SN1 A;  1NGA A;  5AQR A;  3FZK A;  4FSV A;  3FZL A;  3QI7 A;  2KBJ A;  2MBK A;  1KAX A;  3FZM A;  1PTX A;  3D2F A;  1ZVG A;  1AHO A;  1OZZ A;  2MN5 A;  3CW4 A;  5AQH A;  1KAZ A;  1SNB A;  2BUP A;  1K8B A;  1ZUT A;  2KHO A;  1KV0 A;  5AQF A;  2GMO A;  5AQT A;  2YC1 C;  5AQZ A;  2NY8 X;  5F0X A;  5FPD A;  2KSK A;  3SF4 D;  2JDQ D;  5AQP A;  5AQL A;  2ASC A;  5AQS A;  4H5T A;  4HWI A;  1BA0 A;  5EXW A;  1B3C A;  1ZYV A;  1QQO A;  2B68 A;  2KJA A;  3LDO A;  1POI A;  1T1T A;  1TI5 A;  2KPY A;  2LT8 A;  1NGH A;  5AQM A;  4AB0 A;  1PX9 A;  1WMT A;  1NPI A;  3KHW A;  1LQH A;  1I2V A;  2GL1 A;  2N66 A;  2LR3 A;  3ATU A;  1P0A A;  1LQQ A;  3FZH A;  3L56 A;  5AQQ A;  1NGD A;  2QWN A;  1T7B A;  2LN8 A;  3GKU A;  2E2F A;  2K35 A;  3BK3 C;  2LJ7 A;  3L4I A;  2V7Z A;  5EVZ A;  1C55 A;  1DJT A;  1NE5 A;  1ZU3 A;  3HSC A;  3IUC A;  2QXL A;  3E7R L;  3KOW A;  4H5N A;  1B7D A;  2B3C A;  3LDN A;  5F1X A;  3L6Q A;  2E3G A;  5BPN A;  1DQ7 A;  2E0H A;  4CQK A;  2LKB A;  1KAY A;  1SN4 A;  1VNB A;  1WWN A;  3KVG A;  1QQM A;  2LY6 A;  3M3Z A;  5BN9 A;  3GL1 A;  2A7T A;  4V1D C;  2KYQ A;  3KP1 A;  1ATS A;  1MR4 A;  2M8B B;  3R2V A;  1L4V A;  2G2K A;  1PE4 A;  5AQY A;  2VY6 A;  4FL9 A;  4UAD E;  1HX1 A;  1LQI A;  1T0Z A;  3KOZ A;  5AQJ A;  5FPM A;  3C7N B;  1WT7 A;  3KP0 A;  3KOX A;  1AYJ A;  5AQK A;  2QWM A;  3CQX A;  5AQW A;  1I6F A;  1ZYW A;  1BK8 A; 
#chains in the Genus database with same CATH homology
 1ICA A;  4HE7 A;  2SN3 A;  1NRA A;  3E7U X;  1BCG A;  1MYN A;  1OMY A;  2KGQ A;  1GPS A;  3PSM A;  1CHZ A;  4HHF A;  4KYP A;  2LY5 A;  1C55 A;  1N4N A;  5CY0 A;  2YEO A;  1C56 A;  1NH5 A;  1SEG A;  1T7E A;  2KBH A;  2LJM A;  1VNA A;  1JKZ A;  1JXC A;  2LI7 A;  1JZA A;  4AEI A;  2MZ0 A;  1JZB A;  1ZFU A;  1P00 A;  2BRZ A;  2YBR C;  2I61 A;  2N2R A;  4AAZ A;  1BRZ A;  2KBK A;  1FH3 A;  1ZVE A;  5KK4 A;  2NY9 X;  1BMR A;  1CN2 A;  1T7A A;  2ATB A;  2E3F A;  2N69 A;  1I6G A;  2N2Q A;  4UJ0 A;  1NRB A;  1I2U A;  1GPT A;  1SN1 A;  2KBJ A;  1PTX A;  1ZVG A;  1AHO A;  1OZZ A;  1SNB A;  1ZUT A;  1KV0 A;  2YC1 C;  2NY8 X;  2KSK A;  2ASC A;  1B3C A;  1ZYV A;  2B68 A;  2KJA A;  1T1T A;  1TI5 A;  2LT8 A;  2KPY A;  4AB0 A;  1PX9 A;  1WMT A;  1NPI A;  1LQH A;  1I2V A;  2GL1 A;  2N66 A;  2LR3 A;  1P0A A;  1LQQ A;  1T7B A;  2LJ7 A;  1DJT A;  1NE5 A;  1ZU3 A;  3E7R L;  1B7D A;  2B3C A;  2E3G A;  1DQ7 A;  2E0H A;  4CQK A;  2LKB A;  1VNB A;  1SN4 A;  1WWN A;  2LY6 A;  2A7T A;  4V1D C;  2KYQ A;  1MR4 A;  2M8B B;  1L4V A;  1PE4 A;  1LQI A;  1T0Z A;  1WT7 A;  1AYJ A;  1I6F A;  1ZYW A;  1BK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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