2NY9X

Nmr structure of def-abb, a mutant of anopheles defensin def-aaa
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
41
structure length
41
Chain Sequence
ATCDLASGFGVGSSLCAAHCLVKGYRGGYCKNKICHCRDKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords defensin, mutant DEF-ABB
publication title Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
pubmed doi rcsb
source organism Anopheles gambiae
molecule tags Antimicrobial protein
total genus 6
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ny9X00
1T7EA 1AHOA 1B3CA 2E3GA 1C56A 2N69A 2NY8X 2N2QA 4CQKA 5KK4A 1TI5A 1ZYWA 2ATBA 2LJMA 2KSKA 1BRZA 1OZZA 1WWNA 2GL1A 2YC1C 1FH3A 2KGQA 1B7DA 2LY5A 1I2VA 2N2RA 1PE4A 1ZVEA 1T1TA 1LQHA 3E7UX 4UJ0A 2E0HA 1LQIA 2KYQA 1OMYA 1T0ZA 1VNAA 1MR4A 2SN3A 1KV0A 4V1DC 2KJAA 1JZAA 1JXCA 1NH5A 1I6GA 1ICAA 1MYNA 1ZUTA 2YEOA 2KBJA 2M8BB 1I6FA 2N66A 1JZBA 2E3FA 1VNBA 1CHZA 1SEGA 1NE5A 1L4VA 1T7AA 1SN1A 1DJTA 5CY0A 1N4NA 1SNBA 1ZU3A 1ZYVA 1T7BA 1PTXA 2ASCA 2B3CA 3E7RL 4AAZA 1PX9A 4AEIA 2LJ7A 2KPYA 1ZFUA 2LI7A 3PSMA 4HE7A 2YBRC 2LKBA 2KBKA 1SN4A 2BRZA 1C55A 1JKZA 4AB0A 1BCGA 1GPSA 1BK8A 2A7TA 1NRBA 2LY6A 1I2UA 2LT8A 4KYPA 1BMRA 1LQQA 1P00A 1NPIA 1P0AA 2I61A 2B68A 1AYJA 2NY9X 1GPTA 2KBHA 1WT7A 1CN2A 1ZVGA 4HHFA 2MZ0A 1DQ7A 1WMTA 2LR3A 1NRAA
chains in the Genus database with same CATH superfamily
1NGIA 1XRSB 1YUWA 2D56A 2K35A 2QWOA 1T7EA 3FZFA 1AHOA 5AR0A 2KHOA 3JXUA 3A8YA 2QWQA 3L4IA 1B3CA 2E3GA 1C56A 2MBKA 2N69A 2NY8X 4HWIA 2N2QA 3FE1A 2YIOA 3ATUA 3LDNA 5FPNA 4CQKA 4H5RA 5AQWA 5KK4A 1TI5A 1QQOA 5AQVA 1ZYWA 1NGGA 2ATBA 2BUPA 2LJMA 2VY6A 2KSKA 3D2FB 3BK3C 1BRZA 2JDQD 1OZZA 1WWNA 2GL1A 4UADE 2YC1C 1FH3A 3ATVA 2KGQA 1B7DA 2LY5A 2QWMA 1POIA 5BN9A 4H5WA 1I2VA 2N2RA 3KVGA 1QQMA 1PE4A 1ZVEA 4FSVA 5AQFA 1T1TA 3L56A 5BPLA 3LDLA 3KP0A 1LQHA 3CQXA 3E7UX 2E8AA 2E0HA 4UJ0A 2LN8A 1LQIA 3KOXA 2KYQA 3LDPA 5AQXA 3C7NB 1ATRA 5AQIA 1OMYA 1T0ZA 1DKGD 1MR4A 1VNAA 2SN3A 2YILA 1KV0A 3GL1A 2KJAA 4V1DC 5AQLA 5AQMA 5EY4A 4KBOA 2QWPA 1JZAA 1JXCA 1NH5A 5FPEA 1I6GA 1ICAA 1MYNA 1NGDA 1ZUTA 2GMOA 2YEOA 2KBJA 3KOYA 3QI7A 2M8BB 1I6FA 3HSCA 2E88A 5AQHA 2QXLA 2N66A 1JZBA 3D2EB 2E3FA 5FPDA 1VNBA 1CHZA 1SEGA 5AQKA 3GDQA 5AQUA 1NE5A 1S3XA 3KOZA 3M3ZA 2QWLA 5EX5A 1T7AA 1SN1A 1BA1A 1DJTA 1L4VA 5CY0A 5AQSA 3FZKA 1N4NA 1SNBA 3IUCA 1ZU3A 1ZYVA 1T7BA 1PTXA 5AQQA 2ASCA 2B3CA 3CW4A 3E7RL 3LDQA 5AQOA 5EVZA 4UAEF 4AAZA 1PX9A 3SF4D 4AEIA 3C7NA 3KP1A 3LDOA 4GNIA 2LJ7A 1BK8A 4UAFE 1BA0A 2KPYA 3I33A 1ZFUA 2LI7A 5FPMA 3PSMA 4IO8A 3GKUA 5F0XA 1NGFA 4HE7A 1HPMA 1NGAA 2QWRA 2YBRC 1HJOA 3D2FA 1BUPA 3D2EA 2LKBA 5AQRA 2KBKA 2YIPA 1NGBA 1QQNA 2V7ZA 1SN4A 1ATSA 2E2FA 1KAXA 2BRZA 3KOWA 3QFPA 1KAYA 4H5NA 1C55A 1NGJA 1JKZA 4AB0A 1BCGA 5BPMA 5AQNA 1GPSA 3L6QA 2A7TA 1NRBA 2LY6A 1KAZA 3R2VA 2LT8A 4KYPA 5F2RA 1NGCA 3FZMA 1BMRA 1I2UA 5BN8A 3FZHA 1NGHA 5AQPA 1HX1A 1LQQA 1P00A 3QMLA 1NGEA 2QW9A 1NPIA 5AQYA 1P0AA 2G2KA 5F1XA 2I61A 5AQGA 2B68A 3KHWA 3AY9A 3QFUA 1AYJA 3KC6A 5BPNA 2NY9X 1GPTA 2KBHA 1WT7A 1CN2A 1ZVGA 4FL9A 2MZ0A 4HHFA 1DQ7A 1UGLA 5EXWA 2MN5A 1K8BA 5AQTA 1WMTA 3FZLA 5AQZA 4H5VA 5AQJA 2LR3A 4H5TA 1NRAA 2QWNA
chains in the Genus database with same CATH topology
1T7EA 1AHOA 1B3CA 2E3GA 1C56A 2N69A 2NY8X 2N2QA 4CQKA 5KK4A 1TI5A 1ZYWA 2ATBA 2LJMA 2KSKA 1BRZA 1OZZA 1WWNA 2GL1A 2YC1C 1FH3A 2KGQA 1B7DA 2LY5A 1I2VA 2N2RA 1PE4A 1ZVEA 1T1TA 1LQHA 3E7UX 4UJ0A 2E0HA 1LQIA 2KYQA 1OMYA 1T0ZA 1VNAA 1MR4A 2SN3A 1KV0A 4V1DC 2KJAA 1JZAA 1JXCA 1NH5A 1I6GA 1ICAA 1MYNA 1ZUTA 2YEOA 2KBJA 2M8BB 1I6FA 2N66A 1JZBA 2E3FA 1VNBA 1CHZA 1SEGA 1NE5A 1L4VA 1T7AA 1SN1A 1DJTA 5CY0A 1N4NA 1SNBA 1ZU3A 1ZYVA 1T7BA 1PTXA 2ASCA 2B3CA 3E7RL 4AAZA 1PX9A 4AEIA 2LJ7A 2KPYA 1ZFUA 2LI7A 3PSMA 4HE7A 2YBRC 2LKBA 2KBKA 1SN4A 2BRZA 1C55A 1JKZA 4AB0A 1BCGA 1GPSA 1BK8A 2A7TA 1NRBA 2LY6A 1I2UA 2LT8A 4KYPA 1BMRA 1LQQA 1P00A 1NPIA 1P0AA 2I61A 2B68A 1AYJA 2NY9X 1GPTA 2KBHA 1WT7A 1CN2A 1ZVGA 4HHFA 2MZ0A 1DQ7A 1WMTA 2LR3A 1NRAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T7E A;  1AHO A;  1B3C A;  2E3G A;  1C56 A;  2N69 A;  2NY8 X;  2N2Q A;  4CQK A;  5KK4 A;  1TI5 A;  1ZYW A;  2ATB A;  2LJM A;  2KSK A;  1BRZ A;  1OZZ A;  1WWN A;  2GL1 A;  2YC1 C;  1FH3 A;  2KGQ A;  1B7D A;  2LY5 A;  1I2V A;  2N2R A;  1PE4 A;  1ZVE A;  1T1T A;  1LQH A;  3E7U X;  4UJ0 A;  2E0H A;  1LQI A;  2KYQ A;  1OMY A;  1T0Z A;  1VNA A;  1MR4 A;  2SN3 A;  1KV0 A;  4V1D C;  2KJA A;  1JZA A;  1JXC A;  1NH5 A;  1I6G A;  1ICA A;  1MYN A;  1ZUT A;  2YEO A;  2KBJ A;  2M8B B;  1I6F A;  2N66 A;  1JZB A;  2E3F A;  1VNB A;  1CHZ A;  1SEG A;  1NE5 A;  1L4V A;  1T7A A;  1SN1 A;  1DJT A;  5CY0 A;  1N4N A;  1SNB A;  1ZU3 A;  1ZYV A;  1T7B A;  1PTX A;  2ASC A;  2B3C A;  3E7R L;  4AAZ A;  1PX9 A;  4AEI A;  2LJ7 A;  2KPY A;  1ZFU A;  2LI7 A;  3PSM A;  4HE7 A;  2YBR C;  2LKB A;  2KBK A;  1SN4 A;  2BRZ A;  1C55 A;  1JKZ A;  4AB0 A;  1BCG A;  1GPS A;  1BK8 A;  2A7T A;  1NRB A;  2LY6 A;  1I2U A;  2LT8 A;  4KYP A;  1BMR A;  1LQQ A;  1P00 A;  1NPI A;  1P0A A;  2I61 A;  2B68 A;  1AYJ A;  2NY9 X;  1GPT A;  2KBH A;  1WT7 A;  1CN2 A;  1ZVG A;  4HHF A;  2MZ0 A;  1DQ7 A;  1WMT A;  2LR3 A;  1NRA A; 
#chains in the Genus database with same CATH topology
 1NGI A;  1XRS B;  1YUW A;  2D56 A;  2K35 A;  2QWO A;  1T7E A;  3FZF A;  1AHO A;  5AR0 A;  2KHO A;  3JXU A;  3A8Y A;  2QWQ A;  3L4I A;  1B3C A;  2E3G A;  1C56 A;  2MBK A;  2N69 A;  2NY8 X;  4HWI A;  2N2Q A;  3FE1 A;  2YIO A;  3ATU A;  3LDN A;  5FPN A;  4CQK A;  4H5R A;  5AQW A;  5KK4 A;  1TI5 A;  1QQO A;  5AQV A;  1ZYW A;  1NGG A;  2ATB A;  2BUP A;  2LJM A;  2VY6 A;  2KSK A;  3D2F B;  3BK3 C;  1BRZ A;  2JDQ D;  1OZZ A;  1WWN A;  2GL1 A;  4UAD E;  2YC1 C;  1FH3 A;  3ATV A;  2KGQ A;  1B7D A;  2LY5 A;  2QWM A;  1POI A;  5BN9 A;  4H5W A;  1I2V A;  2N2R A;  3KVG A;  1QQM A;  1PE4 A;  1ZVE A;  4FSV A;  5AQF A;  1T1T A;  3L56 A;  5BPL A;  3LDL A;  3KP0 A;  1LQH A;  3CQX A;  3E7U X;  2E8A A;  2E0H A;  4UJ0 A;  2LN8 A;  1LQI A;  3KOX A;  2KYQ A;  3LDP A;  5AQX A;  3C7N B;  1ATR A;  5AQI A;  1OMY A;  1T0Z A;  1DKG D;  1MR4 A;  1VNA A;  2SN3 A;  2YIL A;  1KV0 A;  3GL1 A;  2KJA A;  4V1D C;  5AQL A;  5AQM A;  5EY4 A;  4KBO A;  2QWP A;  1JZA A;  1JXC A;  1NH5 A;  5FPE A;  1I6G A;  1ICA A;  1MYN A;  1NGD A;  1ZUT A;  2GMO A;  2YEO A;  2KBJ A;  3KOY A;  3QI7 A;  2M8B B;  1I6F A;  3HSC A;  2E88 A;  5AQH A;  2QXL A;  2N66 A;  1JZB A;  3D2E B;  2E3F A;  5FPD A;  1VNB A;  1CHZ A;  1SEG A;  5AQK A;  3GDQ A;  5AQU A;  1NE5 A;  1S3X A;  3KOZ A;  3M3Z A;  2QWL A;  5EX5 A;  1T7A A;  1SN1 A;  1BA1 A;  1DJT A;  1L4V A;  5CY0 A;  5AQS A;  3FZK A;  1N4N A;  1SNB A;  3IUC A;  1ZU3 A;  1ZYV A;  1T7B A;  1PTX A;  5AQQ A;  2ASC A;  2B3C A;  3CW4 A;  3E7R L;  3LDQ A;  5AQO A;  5EVZ A;  4UAE F;  4AAZ A;  1PX9 A;  3SF4 D;  4AEI A;  3C7N A;  3KP1 A;  3LDO A;  4GNI A;  2LJ7 A;  1BK8 A;  4UAF E;  1BA0 A;  2KPY A;  3I33 A;  1ZFU A;  2LI7 A;  5FPM A;  3PSM A;  4IO8 A;  3GKU A;  5F0X A;  1NGF A;  4HE7 A;  1HPM A;  1NGA A;  2QWR A;  2YBR C;  1HJO A;  3D2F A;  1BUP A;  3D2E A;  2LKB A;  5AQR A;  2KBK A;  2YIP A;  1NGB A;  1QQN A;  2V7Z A;  1SN4 A;  1ATS A;  2E2F A;  1KAX A;  2BRZ A;  3KOW A;  3QFP A;  1KAY A;  4H5N A;  1C55 A;  1NGJ A;  1JKZ A;  4AB0 A;  1BCG A;  5BPM A;  5AQN A;  1GPS A;  3L6Q A;  2A7T A;  1NRB A;  2LY6 A;  1KAZ A;  3R2V A;  2LT8 A;  4KYP A;  5F2R A;  1NGC A;  3FZM A;  1BMR A;  1I2U A;  5BN8 A;  3FZH A;  1NGH A;  5AQP A;  1HX1 A;  1LQQ A;  1P00 A;  3QML A;  1NGE A;  2QW9 A;  1NPI A;  5AQY A;  1P0A A;  2G2K A;  5F1X A;  2I61 A;  5AQG A;  2B68 A;  3KHW A;  3AY9 A;  3QFU A;  1AYJ A;  3KC6 A;  5BPN A;  2NY9 X;  1GPT A;  2KBH A;  1WT7 A;  1CN2 A;  1ZVG A;  4FL9 A;  2MZ0 A;  4HHF A;  1DQ7 A;  1UGL A;  5EXW A;  2MN5 A;  1K8B A;  5AQT A;  1WMT A;  3FZL A;  5AQZ A;  4H5V A;  5AQJ A;  2LR3 A;  4H5T A;  1NRA A;  2QWN A; 
#chains in the Genus database with same CATH homology
 1T7E A;  1AHO A;  1B3C A;  2E3G A;  1C56 A;  2N69 A;  2NY8 X;  2N2Q A;  4CQK A;  5KK4 A;  1TI5 A;  1ZYW A;  2ATB A;  2LJM A;  2KSK A;  1BRZ A;  1OZZ A;  1WWN A;  2GL1 A;  2YC1 C;  1FH3 A;  2KGQ A;  1B7D A;  2LY5 A;  1I2V A;  2N2R A;  1PE4 A;  1ZVE A;  1T1T A;  1LQH A;  3E7U X;  4UJ0 A;  2E0H A;  1LQI A;  2KYQ A;  1OMY A;  1T0Z A;  1VNA A;  1MR4 A;  2SN3 A;  1KV0 A;  4V1D C;  2KJA A;  1JZA A;  1JXC A;  1NH5 A;  1I6G A;  1ICA A;  1MYN A;  1ZUT A;  2YEO A;  2KBJ A;  2M8B B;  1I6F A;  2N66 A;  1JZB A;  2E3F A;  1VNB A;  1CHZ A;  1SEG A;  1NE5 A;  1L4V A;  1T7A A;  1SN1 A;  1DJT A;  5CY0 A;  1N4N A;  1SNB A;  1ZU3 A;  1ZYV A;  1T7B A;  1PTX A;  2ASC A;  2B3C A;  3E7R L;  4AAZ A;  1PX9 A;  4AEI A;  2LJ7 A;  2KPY A;  1ZFU A;  2LI7 A;  3PSM A;  4HE7 A;  2YBR C;  2LKB A;  2KBK A;  1SN4 A;  2BRZ A;  1C55 A;  1JKZ A;  4AB0 A;  1BCG A;  1GPS A;  1BK8 A;  2A7T A;  1NRB A;  2LY6 A;  1I2U A;  2LT8 A;  4KYP A;  1BMR A;  1LQQ A;  1P00 A;  1NPI A;  1P0A A;  2I61 A;  2B68 A;  1AYJ A;  2NY9 X;  1GPT A;  2KBH A;  1WT7 A;  1CN2 A;  1ZVG A;  4HHF A;  2MZ0 A;  1DQ7 A;  1WMT A;  2LR3 A;  1NRA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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