2NY9X

Nmr structure of def-abb, a mutant of anopheles defensin def-aaa
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
41
structure length
41
Chain Sequence
b'ATCDLASGFGVGSSLCAAHCLVKGYRGGYCKNKICHCRDKF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords defensin, mutant DEF-ABB
publication title Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
pubmed doi rcsb
source organism Anopheles gambiae
molecule tags Antimicrobial protein
total genus 6
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ny9X00
2E3GA 1BK8A 1ZYWA 2LJ7A 2KBHA 2NY9X 1BRZA 1MR4A 3E7RL 1B3CA 2E0HA 1NE5A 1TI5A 2N69A 4UJ0A 1CN2A 2M8BB 2N2RA 1JXCA 2KBJA 1LQHA 2KSKA 3E7UX 4V1DC 2KBKA 1ZFUA 1T7BA 2ATBA 1ZVEA 1LQIA 2YC1C 1NRAA 1JZBA 1CHZA 2LR3A 5CY0A 1BMRA 1NH5A 2YBRC 3PSMA 2B68A 4AB0A 1PE4A 2KPYA 1I6GA 4CQKA 1I2UA 1NPIA 4KYPA 1WMTA 1VNAA 1B7DA 1PX9A 1GPSA 1I2VA 1DJTA 2KJAA 1P00A 1C56A 1T7AA 2B3CA 1KV0A 1C55A 1FH3A 1SEGA 1WT7A 1ZUTA 1AYJA 1N4NA 2YEOA 2LI7A 2A7TA 4AEIA 1PTXA 1ZVGA 1OZZA 1OMYA 1AHOA 1SN1A 2LY6A 4HHFA 1JZAA 2LY5A 1T0ZA 2LKBA 2ASCA 1DQ7A 1T7EA 2I61A 1LQQA 2N2QA 2N66A 1GPTA 1I6FA 2KGQA 1NRBA 1SNBA 1JKZA 1WWNA 2NY8X 4HE7A 1P0AA 1L4VA 4AAZA 1VNBA 2E3FA 2GL1A 1MYNA 1ICAA 2KYQA 1BCGA 2LJMA 2LT8A 1ZYVA 1T1TA 5KK4A 1ZU3A 2BRZA 2SN3A 1SN4A 2MZ0A
chains in the Genus database with same CATH superfamily
3SF4D 2E3GA 5AQFA 2G2KA 1BK8A 1ZYWA 2LJ7A 2KBHA 2NY9X 1BA0A 1BRZA 3FZHA 2QWRA 5AQGA 3LDOA 1MR4A 4UAEF 5F0XA 5EX5A 2JDQD 4H5TA 3E7RL 3JXUA 2MN5A 1B3CA 2E0HA 2E2FA 1HX1A 1NE5A 5FPDA 1TI5A 2N69A 4UJ0A 3M3ZA 5AQOA 1CN2A 4UAFE 2M8BB 1NGHA 1HJOA 1JXCA 2KBJA 2N2RA 3D2EB 1LQHA 2KSKA 5FPNA 5BPMA 5AQZA 1UGLA 5AQIA 3E7UX 3ATVA 4V1DC 3KC6A 1XRSB 1ZFUA 2KBKA 2QWPA 1POIA 1T7BA 5AQWA 1NGAA 1DKGD 2ATBA 1ZVEA 1LQIA 2YC1C 1NRAA 3ATUA 1JZBA 1CHZA 2E88A 2LR3A 2D56A 4FSVA 5CY0A 1NH5A 1BUPA 4H5VA 3D2FB 1BMRA 2QWNA 3A8YA 2YBRC 2VY6A 3CQXA 3KHWA 3PSMA 5AQPA 2B68A 5AQRA 4AB0A 1PE4A 1NGEA 2KPYA 1KAZA 4H5RA 4HWIA 1I6GA 3C7NB 1QQNA 5BN9A 2YIOA 4CQKA 1I2UA 1NPIA 3D2EA 1WMTA 4KYPA 1VNAA 1NGIA 2QWMA 1NGFA 2E8AA 2MBKA 4GNIA 5AQSA 2LN8A 1B7DA 1QQMA 1NGCA 3KOXA 1PX9A 1GPSA 1I2VA 1DJTA 2KJAA 5F2RA 5FPMA 1QQOA 1ATSA 1P00A 1KAXA 1HPMA 1C56A 1T7AA 2B3CA 3BK3C 1KV0A 1C55A 3QI7A 3KOWA 2KHOA 3KOYA 3KP1A 3L4IA 5AR0A 1BA1A 1FH3A 5EY4A 1NGBA 2YIPA 3LDNA 1SEGA 1WT7A 5AQMA 5BPNA 4UADE 1ZUTA 1AYJA 5AQKA 1N4NA 1S3XA 2GMOA 2YEOA 3C7NA 4H5WA 2LI7A 2A7TA 3LDQA 4H5NA 4IO8A 2QWLA 1NGJA 4AEIA 1PTXA 2QXLA 1ZVGA 2QWQA 3GKUA 1OZZA 3L6QA 1K8BA 1OMYA 3QMLA 2K35A 1AHOA 3QFUA 2V7ZA 3KP0A 5AQQA 3LDLA 1SN1A 2LY6A 4HHFA 5EXWA 1JZAA 2LY5A 1T0ZA 2LKBA 2ASCA 3AY9A 5BN8A 1DQ7A 2QW9A 3R2VA 1T7EA 3KOZA 2I61A 1LQQA 2N2QA 2N66A 4FL9A 1I6FA 1GPTA 2KGQA 5AQTA 3LDPA 1NGGA 3IUCA 1NRBA 1ATRA 1SNBA 1JKZA 2BUPA 1WWNA 5AQHA 5AQJA 3QFPA 3D2FA 5FPEA 2NY8X 4HE7A 5AQNA 5AQXA 1YUWA 1P0AA 3GL1A 1L4VA 4AAZA 2YILA 1VNBA 2E3FA 2GL1A 1MYNA 1ICAA 1KAYA 3KVGA 3CW4A 2QWOA 2KYQA 1BCGA 3GDQA 2LJMA 3FZLA 2LT8A 1ZYVA 5F1XA 3FZFA 3I33A 1T1TA 3L56A 5KK4A 3HSCA 3FZKA 3FZMA 5AQVA 1NGDA 5AQYA 4KBOA 5EVZA 5AQLA 5BPLA 1ZU3A 2BRZA 3FE1A 2SN3A 5AQUA 1SN4A 2MZ0A
chains in the Genus database with same CATH topology
2E3GA 1BK8A 1ZYWA 2LJ7A 2KBHA 2NY9X 1BRZA 1MR4A 3E7RL 1B3CA 2E0HA 1NE5A 1TI5A 2N69A 4UJ0A 1CN2A 2M8BB 2N2RA 1JXCA 2KBJA 1LQHA 2KSKA 3E7UX 4V1DC 2KBKA 1ZFUA 1T7BA 2ATBA 1ZVEA 1LQIA 2YC1C 1NRAA 1JZBA 1CHZA 2LR3A 5CY0A 1BMRA 1NH5A 2YBRC 3PSMA 2B68A 4AB0A 1PE4A 2KPYA 1I6GA 4CQKA 1I2UA 1NPIA 4KYPA 1WMTA 1VNAA 1B7DA 1PX9A 1GPSA 1I2VA 1DJTA 2KJAA 1P00A 1C56A 1T7AA 2B3CA 1KV0A 1C55A 1FH3A 1SEGA 1WT7A 1ZUTA 1AYJA 1N4NA 2YEOA 2LI7A 2A7TA 4AEIA 1PTXA 1ZVGA 1OZZA 1OMYA 1AHOA 1SN1A 2LY6A 4HHFA 1JZAA 2LY5A 1T0ZA 2LKBA 2ASCA 1DQ7A 1T7EA 2I61A 1LQQA 2N2QA 2N66A 1GPTA 1I6FA 2KGQA 1NRBA 1SNBA 1JKZA 1WWNA 2NY8X 4HE7A 1P0AA 1L4VA 4AAZA 1VNBA 2E3FA 2GL1A 1MYNA 1ICAA 2KYQA 1BCGA 2LJMA 2LT8A 1ZYVA 1T1TA 5KK4A 1ZU3A 2BRZA 2SN3A 1SN4A 2MZ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E3G A;  1BK8 A;  1ZYW A;  2LJ7 A;  2KBH A;  2NY9 X;  1BRZ A;  1MR4 A;  3E7R L;  1B3C A;  2E0H A;  1NE5 A;  1TI5 A;  2N69 A;  4UJ0 A;  1CN2 A;  2M8B B;  2N2R A;  1JXC A;  2KBJ A;  1LQH A;  2KSK A;  3E7U X;  4V1D C;  2KBK A;  1ZFU A;  1T7B A;  2ATB A;  1ZVE A;  1LQI A;  2YC1 C;  1NRA A;  1JZB A;  1CHZ A;  2LR3 A;  5CY0 A;  1BMR A;  1NH5 A;  2YBR C;  3PSM A;  2B68 A;  4AB0 A;  1PE4 A;  2KPY A;  1I6G A;  4CQK A;  1I2U A;  1NPI A;  4KYP A;  1WMT A;  1VNA A;  1B7D A;  1PX9 A;  1GPS A;  1I2V A;  1DJT A;  2KJA A;  1P00 A;  1C56 A;  1T7A A;  2B3C A;  1KV0 A;  1C55 A;  1FH3 A;  1SEG A;  1WT7 A;  1ZUT A;  1AYJ A;  1N4N A;  2YEO A;  2LI7 A;  2A7T A;  4AEI A;  1PTX A;  1ZVG A;  1OZZ A;  1OMY A;  1AHO A;  1SN1 A;  2LY6 A;  4HHF A;  1JZA A;  2LY5 A;  1T0Z A;  2LKB A;  2ASC A;  1DQ7 A;  1T7E A;  2I61 A;  1LQQ A;  2N2Q A;  2N66 A;  1GPT A;  1I6F A;  2KGQ A;  1NRB A;  1SNB A;  1JKZ A;  1WWN A;  2NY8 X;  4HE7 A;  1P0A A;  1L4V A;  4AAZ A;  1VNB A;  2E3F A;  2GL1 A;  1MYN A;  1ICA A;  2KYQ A;  1BCG A;  2LJM A;  2LT8 A;  1ZYV A;  1T1T A;  5KK4 A;  1ZU3 A;  2BRZ A;  2SN3 A;  1SN4 A;  2MZ0 A; 
#chains in the Genus database with same CATH topology
 3SF4 D;  2E3G A;  5AQF A;  2G2K A;  1BK8 A;  1ZYW A;  2LJ7 A;  2KBH A;  2NY9 X;  1BA0 A;  1BRZ A;  3FZH A;  2QWR A;  5AQG A;  3LDO A;  1MR4 A;  4UAE F;  5F0X A;  5EX5 A;  2JDQ D;  4H5T A;  3E7R L;  3JXU A;  2MN5 A;  1B3C A;  2E0H A;  2E2F A;  1HX1 A;  1NE5 A;  5FPD A;  1TI5 A;  2N69 A;  4UJ0 A;  3M3Z A;  5AQO A;  1CN2 A;  4UAF E;  2M8B B;  1NGH A;  1HJO A;  1JXC A;  2KBJ A;  2N2R A;  3D2E B;  1LQH A;  2KSK A;  5FPN A;  5BPM A;  5AQZ A;  1UGL A;  5AQI A;  3E7U X;  3ATV A;  4V1D C;  3KC6 A;  1XRS B;  1ZFU A;  2KBK A;  2QWP A;  1POI A;  1T7B A;  5AQW A;  1NGA A;  1DKG D;  2ATB A;  1ZVE A;  1LQI A;  2YC1 C;  1NRA A;  3ATU A;  1JZB A;  1CHZ A;  2E88 A;  2LR3 A;  2D56 A;  4FSV A;  5CY0 A;  1NH5 A;  1BUP A;  4H5V A;  3D2F B;  1BMR A;  2QWN A;  3A8Y A;  2YBR C;  2VY6 A;  3CQX A;  3KHW A;  3PSM A;  5AQP A;  2B68 A;  5AQR A;  4AB0 A;  1PE4 A;  1NGE A;  2KPY A;  1KAZ A;  4H5R A;  4HWI A;  1I6G A;  3C7N B;  1QQN A;  5BN9 A;  2YIO A;  4CQK A;  1I2U A;  1NPI A;  3D2E A;  1WMT A;  4KYP A;  1VNA A;  1NGI A;  2QWM A;  1NGF A;  2E8A A;  2MBK A;  4GNI A;  5AQS A;  2LN8 A;  1B7D A;  1QQM A;  1NGC A;  3KOX A;  1PX9 A;  1GPS A;  1I2V A;  1DJT A;  2KJA A;  5F2R A;  5FPM A;  1QQO A;  1ATS A;  1P00 A;  1KAX A;  1HPM A;  1C56 A;  1T7A A;  2B3C A;  3BK3 C;  1KV0 A;  1C55 A;  3QI7 A;  3KOW A;  2KHO A;  3KOY A;  3KP1 A;  3L4I A;  5AR0 A;  1BA1 A;  1FH3 A;  5EY4 A;  1NGB A;  2YIP A;  3LDN A;  1SEG A;  1WT7 A;  5AQM A;  5BPN A;  4UAD E;  1ZUT A;  1AYJ A;  5AQK A;  1N4N A;  1S3X A;  2GMO A;  2YEO A;  3C7N A;  4H5W A;  2LI7 A;  2A7T A;  3LDQ A;  4H5N A;  4IO8 A;  2QWL A;  1NGJ A;  4AEI A;  1PTX A;  2QXL A;  1ZVG A;  2QWQ A;  3GKU A;  1OZZ A;  3L6Q A;  1K8B A;  1OMY A;  3QML A;  2K35 A;  1AHO A;  3QFU A;  2V7Z A;  3KP0 A;  5AQQ A;  3LDL A;  1SN1 A;  2LY6 A;  4HHF A;  5EXW A;  1JZA A;  2LY5 A;  1T0Z A;  2LKB A;  2ASC A;  3AY9 A;  5BN8 A;  1DQ7 A;  2QW9 A;  3R2V A;  1T7E A;  3KOZ A;  2I61 A;  1LQQ A;  2N2Q A;  2N66 A;  4FL9 A;  1I6F A;  1GPT A;  2KGQ A;  5AQT A;  3LDP A;  1NGG A;  3IUC A;  1NRB A;  1ATR A;  1SNB A;  1JKZ A;  2BUP A;  1WWN A;  5AQH A;  5AQJ A;  3QFP A;  3D2F A;  5FPE A;  2NY8 X;  4HE7 A;  5AQN A;  5AQX A;  1YUW A;  1P0A A;  3GL1 A;  1L4V A;  4AAZ A;  2YIL A;  1VNB A;  2E3F A;  2GL1 A;  1MYN A;  1ICA A;  1KAY A;  3KVG A;  3CW4 A;  2QWO A;  2KYQ A;  1BCG A;  3GDQ A;  2LJM A;  3FZL A;  2LT8 A;  1ZYV A;  5F1X A;  3FZF A;  3I33 A;  1T1T A;  3L56 A;  5KK4 A;  3HSC A;  3FZK A;  3FZM A;  5AQV A;  1NGD A;  5AQY A;  4KBO A;  5EVZ A;  5AQL A;  5BPL A;  1ZU3 A;  2BRZ A;  3FE1 A;  2SN3 A;  5AQU A;  1SN4 A;  2MZ0 A; 
#chains in the Genus database with same CATH homology
 2E3G A;  1BK8 A;  1ZYW A;  2LJ7 A;  2KBH A;  2NY9 X;  1BRZ A;  1MR4 A;  3E7R L;  1B3C A;  2E0H A;  1NE5 A;  1TI5 A;  2N69 A;  4UJ0 A;  1CN2 A;  2M8B B;  2N2R A;  1JXC A;  2KBJ A;  1LQH A;  2KSK A;  3E7U X;  4V1D C;  2KBK A;  1ZFU A;  1T7B A;  2ATB A;  1ZVE A;  1LQI A;  2YC1 C;  1NRA A;  1JZB A;  1CHZ A;  2LR3 A;  5CY0 A;  1BMR A;  1NH5 A;  2YBR C;  3PSM A;  2B68 A;  4AB0 A;  1PE4 A;  2KPY A;  1I6G A;  4CQK A;  1I2U A;  1NPI A;  4KYP A;  1WMT A;  1VNA A;  1B7D A;  1PX9 A;  1GPS A;  1I2V A;  1DJT A;  2KJA A;  1P00 A;  1C56 A;  1T7A A;  2B3C A;  1KV0 A;  1C55 A;  1FH3 A;  1SEG A;  1WT7 A;  1ZUT A;  1AYJ A;  1N4N A;  2YEO A;  2LI7 A;  2A7T A;  4AEI A;  1PTX A;  1ZVG A;  1OZZ A;  1OMY A;  1AHO A;  1SN1 A;  2LY6 A;  4HHF A;  1JZA A;  2LY5 A;  1T0Z A;  2LKB A;  2ASC A;  1DQ7 A;  1T7E A;  2I61 A;  1LQQ A;  2N2Q A;  2N66 A;  1GPT A;  1I6F A;  2KGQ A;  1NRB A;  1SNB A;  1JKZ A;  1WWN A;  2NY8 X;  4HE7 A;  1P0A A;  1L4V A;  4AAZ A;  1VNB A;  2E3F A;  2GL1 A;  1MYN A;  1ICA A;  2KYQ A;  1BCG A;  2LJM A;  2LT8 A;  1ZYV A;  1T1T A;  5KK4 A;  1ZU3 A;  2BRZ A;  2SN3 A;  1SN4 A;  2MZ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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