1NE5A

Solution structure of herg specific scorpion toxin cnerg1
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
42
structure length
42
Chain Sequence
DRDSCVDKSRCAKYGYYQECQDCCKNAGHNGGTCMFFKCKCA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords ergtoxin
publication title Solution structure of CnErg1 (Ergtoxin), a HERG specific scorpion toxin
pubmed doi rcsb
total genus 7
structure length 42
sequence length 42
ec nomenclature
pdb deposition date 2002-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08086 Toxin_17 Ergtoxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1ne5A00
1VNAA 1LQHA 1B7DA 1SN4A 2E3GA 1B3CA 1MR4A 3PSMA 2YC1C 2SN3A 4V1DC 5CY0A 1JKZA 2I61A 1ZUTA 2YBRC 3E7RL 2KPYA 1ZVEA 2N69A 4AEIA 2ATBA 2LT8A 1C55A 2KSKA 2KGQA 2KBJA 4UJ0A 1SEGA 1OZZA 1P00A 2A7TA 1BK8A 2M8BB 2ASCA 4HE7A 2MZ0A 2LY6A 4HHFA 2LKBA 2NY8X 1NRAA 1TI5A 1P0AA 1CN2A 2GL1A 1BRZA 1DJTA 1ZFUA 1PTXA 1WT7A 1CHZA 1ZU3A 4KYPA 3E7UX 1KV0A 1T7AA 1T1TA 1NE5A 2NY9X 1BCGA 1C56A 2B3CA 1ZYVA 2BRZA 1N4NA 1NRBA 2YEOA 2E3FA 1VNBA 5KK4A 4AAZA 2N66A 1T0ZA 1JXCA 2KBKA 1LQIA 1ZYWA 1JZAA 1BMRA 2LR3A 1LQQA 2KJAA 1ZVGA 4CQKA 2N2RA 2E0HA 1NH5A 1ICAA 2KYQA 1JZBA 2LJMA 1PE4A 2N2QA 1DQ7A 1PX9A 1WWNA 1GPSA 1I2VA 2B68A 1I2UA 1OMYA 2LI7A 1SNBA 2LY5A 1SN1A 1T7BA 2KBHA 1FH3A 2LJ7A 1WMTA 1I6GA 1I6FA 1L4VA 1AYJA 1T7EA 1NPIA 1MYNA 1AHOA 1GPTA 4AB0A
chains in the Genus database with same CATH superfamily
1NGJA 1VNAA 1LQHA 1B7DA 1SN4A 2E3GA 2MBKA 2YIOA 1B3CA 5AQZA 2G2KA 1MR4A 3FZMA 2YC1C 2SN3A 3PSMA 1BA0A 2LN8A 4V1DC 2BUPA 5AQGA 4KBOA 5FPEA 1NGFA 5CY0A 1JKZA 2I61A 2GMOA 1ZUTA 2YBRC 3E7RL 2KPYA 1ZVEA 5BN9A 3KP0A 2QWLA 1BA1A 2N69A 3D2FB 3I33A 4UAFE 4AEIA 3KC6A 4FL9A 2K35A 2QWNA 2ATBA 2LT8A 5AQNA 1C55A 1KAYA 1NGDA 2KSKA 3QFUA 2KGQA 2KBJA 3D2FA 1SEGA 3FZFA 1OZZA 5AQRA 4UJ0A 3FZKA 1ATRA 3ATUA 1NGHA 4H5TA 1P00A 1KAXA 1YUWA 3GDQA 3GKUA 1NGBA 2A7TA 2M8BB 3GL1A 3LDQA 2ASCA 3KOZA 1BK8A 1NGAA 4HE7A 1HPMA 5AQYA 2MZ0A 5BPMA 2LY6A 5AQSA 4HHFA 2LKBA 2NY8X 3LDOA 1NRAA 3JXUA 1TI5A 1P0AA 1CN2A 2GL1A 3L56A 5BPNA 2QWPA 2QWMA 3A8YA 5F2RA 1BRZA 1DJTA 5AQFA 1S3XA 1ZFUA 1PTXA 1WT7A 1CHZA 1ZU3A 4KYPA 3E7UX 3M3ZA 1KV0A 3QMLA 4H5WA 1QQMA 1T7AA 5AQMA 5EY4A 1DKGD 1T1TA 3FZHA 5F0XA 4IO8A 1NE5A 1QQNA 2YIPA 4H5NA 2QWOA 3KP1A 3C7NB 3HSCA 3BK3C 2NY9X 3FZLA 1BCGA 3L4IA 1C56A 4FSVA 2B3CA 5AQXA 1ZYVA 5AQIA 4H5RA 4UAEF 2BRZA 1N4NA 1NRBA 3AY9A 3C7NA 2YEOA 3CW4A 2VY6A 2E3FA 5AQKA 4GNIA 3R2VA 1VNBA 4HWIA 5FPMA 5KK4A 4AAZA 5F1XA 1ATSA 2V7ZA 2N66A 1T0ZA 5AR0A 5AQHA 5FPDA 4UADE 5BPLA 2QW9A 1JXCA 2E8AA 2KBKA 2QWRA 1LQIA 5EVZA 1ZYWA 1XRSB 1POIA 1JZAA 1NGCA 1BMRA 2JDQD 2QXLA 2LR3A 3LDPA 3KOYA 1LQQA 5AQLA 2YILA 5AQUA 1NGEA 2KJAA 1NGIA 5EXWA 1ZVGA 3LDNA 5AQWA 3QI7A 4CQKA 5AQJA 3L6QA 1HX1A 2N2RA 5FPNA 2E0HA 1NH5A 2E2FA 3IUCA 2KYQA 1JZBA 2LJMA 1ICAA 1PE4A 2N2QA 1DQ7A 1PX9A 1WWNA 1GPSA 1I2VA 2B68A 1I2UA 1K8BA 2QWQA 3KOXA 5AQPA 1OMYA 3SF4D 2LI7A 1SNBA 3LDLA 2LY5A 1UGLA 1SN1A 5AQTA 3D2EA 3KHWA 3KOWA 1T7BA 3QFPA 2KBHA 5AQOA 1FH3A 2MN5A 5BN8A 2E88A 2LJ7A 1WMTA 5AQQA 1I6GA 1NGGA 1I6FA 2KHOA 1L4VA 3D2EB 1BUPA 3FE1A 1T7EA 1AYJA 1HJOA 1NPIA 1MYNA 1KAZA 1AHOA 3CQXA 4H5VA 4AB0A 1GPTA 3ATVA 3KVGA 5EX5A 1QQOA 2D56A 5AQVA
chains in the Genus database with same CATH topology
1VNAA 1LQHA 1B7DA 1SN4A 2E3GA 1B3CA 1MR4A 3PSMA 2YC1C 2SN3A 4V1DC 5CY0A 1JKZA 2I61A 1ZUTA 2YBRC 3E7RL 2KPYA 1ZVEA 2N69A 4AEIA 2ATBA 2LT8A 1C55A 2KSKA 2KGQA 2KBJA 4UJ0A 1SEGA 1OZZA 1P00A 2A7TA 1BK8A 2M8BB 2ASCA 4HE7A 2MZ0A 2LY6A 4HHFA 2LKBA 2NY8X 1NRAA 1TI5A 1P0AA 1CN2A 2GL1A 1BRZA 1DJTA 1ZFUA 1PTXA 1WT7A 1CHZA 1ZU3A 4KYPA 3E7UX 1KV0A 1T7AA 1T1TA 1NE5A 2NY9X 1BCGA 1C56A 2B3CA 1ZYVA 2BRZA 1N4NA 1NRBA 2YEOA 2E3FA 1VNBA 5KK4A 4AAZA 2N66A 1T0ZA 1JXCA 2KBKA 1LQIA 1ZYWA 1JZAA 1BMRA 2LR3A 1LQQA 2KJAA 1ZVGA 4CQKA 2N2RA 2E0HA 1NH5A 1ICAA 2KYQA 1JZBA 2LJMA 1PE4A 2N2QA 1DQ7A 1PX9A 1WWNA 1GPSA 1I2VA 2B68A 1I2UA 1OMYA 2LI7A 1SNBA 2LY5A 1SN1A 1T7BA 2KBHA 1FH3A 2LJ7A 1WMTA 1I6GA 1I6FA 1L4VA 1AYJA 1T7EA 1NPIA 1MYNA 1AHOA 1GPTA 4AB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VNA A;  1LQH A;  1B7D A;  1SN4 A;  2E3G A;  1B3C A;  1MR4 A;  3PSM A;  2YC1 C;  2SN3 A;  4V1D C;  5CY0 A;  1JKZ A;  2I61 A;  1ZUT A;  2YBR C;  3E7R L;  2KPY A;  1ZVE A;  2N69 A;  4AEI A;  2ATB A;  2LT8 A;  1C55 A;  2KSK A;  2KGQ A;  2KBJ A;  4UJ0 A;  1SEG A;  1OZZ A;  1P00 A;  2A7T A;  1BK8 A;  2M8B B;  2ASC A;  4HE7 A;  2MZ0 A;  2LY6 A;  4HHF A;  2LKB A;  2NY8 X;  1NRA A;  1TI5 A;  1P0A A;  1CN2 A;  2GL1 A;  1BRZ A;  1DJT A;  1ZFU A;  1PTX A;  1WT7 A;  1CHZ A;  1ZU3 A;  4KYP A;  3E7U X;  1KV0 A;  1T7A A;  1T1T A;  1NE5 A;  2NY9 X;  1BCG A;  1C56 A;  2B3C A;  1ZYV A;  2BRZ A;  1N4N A;  1NRB A;  2YEO A;  2E3F A;  1VNB A;  5KK4 A;  4AAZ A;  2N66 A;  1T0Z A;  1JXC A;  2KBK A;  1LQI A;  1ZYW A;  1JZA A;  1BMR A;  2LR3 A;  1LQQ A;  2KJA A;  1ZVG A;  4CQK A;  2N2R A;  2E0H A;  1NH5 A;  1ICA A;  2KYQ A;  1JZB A;  2LJM A;  1PE4 A;  2N2Q A;  1DQ7 A;  1PX9 A;  1WWN A;  1GPS A;  1I2V A;  2B68 A;  1I2U A;  1OMY A;  2LI7 A;  1SNB A;  2LY5 A;  1SN1 A;  1T7B A;  2KBH A;  1FH3 A;  2LJ7 A;  1WMT A;  1I6G A;  1I6F A;  1L4V A;  1AYJ A;  1T7E A;  1NPI A;  1MYN A;  1AHO A;  1GPT A;  4AB0 A; 
#chains in the Genus database with same CATH topology
 1NGJ A;  1VNA A;  1LQH A;  1B7D A;  1SN4 A;  2E3G A;  2MBK A;  2YIO A;  1B3C A;  5AQZ A;  2G2K A;  1MR4 A;  3FZM A;  2YC1 C;  2SN3 A;  3PSM A;  1BA0 A;  2LN8 A;  4V1D C;  2BUP A;  5AQG A;  4KBO A;  5FPE A;  1NGF A;  5CY0 A;  1JKZ A;  2I61 A;  2GMO A;  1ZUT A;  2YBR C;  3E7R L;  2KPY A;  1ZVE A;  5BN9 A;  3KP0 A;  2QWL A;  1BA1 A;  2N69 A;  3D2F B;  3I33 A;  4UAF E;  4AEI A;  3KC6 A;  4FL9 A;  2K35 A;  2QWN A;  2ATB A;  2LT8 A;  5AQN A;  1C55 A;  1KAY A;  1NGD A;  2KSK A;  3QFU A;  2KGQ A;  2KBJ A;  3D2F A;  1SEG A;  3FZF A;  1OZZ A;  5AQR A;  4UJ0 A;  3FZK A;  1ATR A;  3ATU A;  1NGH A;  4H5T A;  1P00 A;  1KAX A;  1YUW A;  3GDQ A;  3GKU A;  1NGB A;  2A7T A;  2M8B B;  3GL1 A;  3LDQ A;  2ASC A;  3KOZ A;  1BK8 A;  1NGA A;  4HE7 A;  1HPM A;  5AQY A;  2MZ0 A;  5BPM A;  2LY6 A;  5AQS A;  4HHF A;  2LKB A;  2NY8 X;  3LDO A;  1NRA A;  3JXU A;  1TI5 A;  1P0A A;  1CN2 A;  2GL1 A;  3L56 A;  5BPN A;  2QWP A;  2QWM A;  3A8Y A;  5F2R A;  1BRZ A;  1DJT A;  5AQF A;  1S3X A;  1ZFU A;  1PTX A;  1WT7 A;  1CHZ A;  1ZU3 A;  4KYP A;  3E7U X;  3M3Z A;  1KV0 A;  3QML A;  4H5W A;  1QQM A;  1T7A A;  5AQM A;  5EY4 A;  1DKG D;  1T1T A;  3FZH A;  5F0X A;  4IO8 A;  1NE5 A;  1QQN A;  2YIP A;  4H5N A;  2QWO A;  3KP1 A;  3C7N B;  3HSC A;  3BK3 C;  2NY9 X;  3FZL A;  1BCG A;  3L4I A;  1C56 A;  4FSV A;  2B3C A;  5AQX A;  1ZYV A;  5AQI A;  4H5R A;  4UAE F;  2BRZ A;  1N4N A;  1NRB A;  3AY9 A;  3C7N A;  2YEO A;  3CW4 A;  2VY6 A;  2E3F A;  5AQK A;  4GNI A;  3R2V A;  1VNB A;  4HWI A;  5FPM A;  5KK4 A;  4AAZ A;  5F1X A;  1ATS A;  2V7Z A;  2N66 A;  1T0Z A;  5AR0 A;  5AQH A;  5FPD A;  4UAD E;  5BPL A;  2QW9 A;  1JXC A;  2E8A A;  2KBK A;  2QWR A;  1LQI A;  5EVZ A;  1ZYW A;  1XRS B;  1POI A;  1JZA A;  1NGC A;  1BMR A;  2JDQ D;  2QXL A;  2LR3 A;  3LDP A;  3KOY A;  1LQQ A;  5AQL A;  2YIL A;  5AQU A;  1NGE A;  2KJA A;  1NGI A;  5EXW A;  1ZVG A;  3LDN A;  5AQW A;  3QI7 A;  4CQK A;  5AQJ A;  3L6Q A;  1HX1 A;  2N2R A;  5FPN A;  2E0H A;  1NH5 A;  2E2F A;  3IUC A;  2KYQ A;  1JZB A;  2LJM A;  1ICA A;  1PE4 A;  2N2Q A;  1DQ7 A;  1PX9 A;  1WWN A;  1GPS A;  1I2V A;  2B68 A;  1I2U A;  1K8B A;  2QWQ A;  3KOX A;  5AQP A;  1OMY A;  3SF4 D;  2LI7 A;  1SNB A;  3LDL A;  2LY5 A;  1UGL A;  1SN1 A;  5AQT A;  3D2E A;  3KHW A;  3KOW A;  1T7B A;  3QFP A;  2KBH A;  5AQO A;  1FH3 A;  2MN5 A;  5BN8 A;  2E88 A;  2LJ7 A;  1WMT A;  5AQQ A;  1I6G A;  1NGG A;  1I6F A;  2KHO A;  1L4V A;  3D2E B;  1BUP A;  3FE1 A;  1T7E A;  1AYJ A;  1HJO A;  1NPI A;  1MYN A;  1KAZ A;  1AHO A;  3CQX A;  4H5V A;  4AB0 A;  1GPT A;  3ATV A;  3KVG A;  5EX5 A;  1QQO A;  2D56 A;  5AQV A; 
#chains in the Genus database with same CATH homology
 1VNA A;  1LQH A;  1B7D A;  1SN4 A;  2E3G A;  1B3C A;  1MR4 A;  3PSM A;  2YC1 C;  2SN3 A;  4V1D C;  5CY0 A;  1JKZ A;  2I61 A;  1ZUT A;  2YBR C;  3E7R L;  2KPY A;  1ZVE A;  2N69 A;  4AEI A;  2ATB A;  2LT8 A;  1C55 A;  2KSK A;  2KGQ A;  2KBJ A;  4UJ0 A;  1SEG A;  1OZZ A;  1P00 A;  2A7T A;  1BK8 A;  2M8B B;  2ASC A;  4HE7 A;  2MZ0 A;  2LY6 A;  4HHF A;  2LKB A;  2NY8 X;  1NRA A;  1TI5 A;  1P0A A;  1CN2 A;  2GL1 A;  1BRZ A;  1DJT A;  1ZFU A;  1PTX A;  1WT7 A;  1CHZ A;  1ZU3 A;  4KYP A;  3E7U X;  1KV0 A;  1T7A A;  1T1T A;  1NE5 A;  2NY9 X;  1BCG A;  1C56 A;  2B3C A;  1ZYV A;  2BRZ A;  1N4N A;  1NRB A;  2YEO A;  2E3F A;  1VNB A;  5KK4 A;  4AAZ A;  2N66 A;  1T0Z A;  1JXC A;  2KBK A;  1LQI A;  1ZYW A;  1JZA A;  1BMR A;  2LR3 A;  1LQQ A;  2KJA A;  1ZVG A;  4CQK A;  2N2R A;  2E0H A;  1NH5 A;  1ICA A;  2KYQ A;  1JZB A;  2LJM A;  1PE4 A;  2N2Q A;  1DQ7 A;  1PX9 A;  1WWN A;  1GPS A;  1I2V A;  2B68 A;  1I2U A;  1OMY A;  2LI7 A;  1SNB A;  2LY5 A;  1SN1 A;  1T7B A;  2KBH A;  1FH3 A;  2LJ7 A;  1WMT A;  1I6G A;  1I6F A;  1L4V A;  1AYJ A;  1T7E A;  1NPI A;  1MYN A;  1AHO A;  1GPT A;  4AB0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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