2JDQD

C-terminal domain of influenza a virus polymerase pb2 subunit in complex with human importin alpha5
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
69
structure length
63
Chain Sequence
SAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSQTATKRIRM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
source organism Homo sapiens
publication title Structure and Nuclear Import Function of the C- Terminal Domain of Influenza Virus Polymerase Pb2 Subunit
pubmed doi rcsb
molecule keywords IMPORTIN ALPHA-1 SUBUNIT
total genus 9
structure length 63
sequence length 69
chains with identical sequence E
ec nomenclature
pdb deposition date 2007-01-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2jdqD00
2GMOA 2VY6A 4UADE 3KC6A 3CW4A 2JDQD 3KHWA 4UAFE 3L56A 4UAEF 3R2VA
chains in the Genus database with same CATH superfamily
2QW9A 2LY5A 4HWIA 3HSCA 3QFPA 2LKBA 5F1XA 4AB0A 1NPIA 1NGGA 5AQZA 2KYQA 3KOZA 2QWMA 1SEGA 3JXUA 5AQKA 3D2FB 5KK4A 3LDOA 1T0ZA 5EX5A 1SN4A 5AQTA 4FL9A 1XRSB 2LJ7A 2QWNA 1MYNA 3KOYA 4H5TA 3BK3C 5AQGA 3GDQA 3L4IA 1WWNA 1FH3A 2LY6A 3FZHA 3QI7A 5FPNA 1C55A 4UJ0A 1NGFA 1P00A 1NGIA 2K35A 1NGDA 1NH5A 4H5WA 1BMRA 2G2KA 2I61A 3ATUA 3E7UX 3FZMA 1WMTA 1NGAA 2GL1A 3FE1A 1SN1A 1NRAA 5EXWA 5AQHA 1PE4A 1DJTA 1PX9A 3FZFA 1ZVEA 1LQQA 1JKZA 2NY9X 1T1TA 1I2VA 1TI5A 1BUPA 1UGLA 1ZU3A 2QWLA 3D2FA 1N4NA 3FZLA 2NY8X 3L56A 2ATBA 4KYPA 5AQYA 4CQKA 3QFUA 1MR4A 1LQHA 3KP0A 3M3ZA 1L4VA 5EY4A 4H5NA 2KHOA 3C7NB 3CQXA 5AQSA 1I2UA 4AEIA 2KSKA 5F2RA 1BCGA 2QXLA 2QWRA 2YBRC 4HE7A 1CHZA 1ATRA 5AQMA 3IUCA 1AHOA 3D2EB 3LDNA 2V7ZA 1LQIA 3L6QA 1HPMA 1NGEA 1YUWA 2E3GA 2E8AA 3R2VA 1BK8A 2MBKA 5AQPA 1POIA 1ZYVA 5BN8A 5BPLA 2YC1C 1C56A 2LN8A 3SF4D 1VNBA 2D56A 3PSMA 1S3XA 1ZYWA 3ATVA 1ICAA 1DKGD 2JDQD 1JXCA 2SN3A 1B7DA 2B3CA 1NRBA 3CW4A 3LDQA 2N69A 5AQLA 2LT8A 5BPMA 5FPMA 2GMOA 1ZFUA 3GKUA 4KBOA 1PTXA 2KBHA 3KHWA 1QQMA 5CY0A 1ATSA 1SNBA 1KAZA 2LR3A 2M8BB 4UADE 3LDLA 1OZZA 5AQXA 2KBJA 1OMYA 2QWPA 5BN9A 3LDPA 2YILA 3KC6A 2YIPA 5AQJA 3D2EA 2KJAA 5FPEA 5FPDA 3KVGA 1P0AA 2LI7A 5AQOA 4AAZA 2E88A 1JZBA 1AYJA 3FZKA 5AQNA 5AR0A 5F0XA 1KAYA 3E7RL 2MN5A 1K8BA 1NE5A 2QWQA 2BRZA 1CN2A 1WT7A 2E0HA 4UAEF 1BA1A 1NGHA 4IO8A 1QQNA 5AQWA 2B68A 1T7AA 2E2FA 1HX1A 2ASCA 2QWOA 1BA0A 2YIOA 2E3FA 5BPNA 1NGJA 4H5VA 1GPSA 3KOWA 2A7TA 1QQOA 4H5RA 5AQIA 3KOXA 1JZAA 1ZVGA 2KPYA 1HJOA 5AQUA 3A8YA 1KAXA 5AQVA 1T7BA 1NGCA 2N2RA 5AQFA 1I6FA 1ZUTA 1T7EA 3C7NA 2BUPA 1BRZA 2LJMA 3GL1A 1B3CA 3I33A 1I6GA 5AQRA 2YEOA 4HHFA 2N66A 1NGBA 1KV0A 2KBKA 1VNAA 3QMLA 1DQ7A 3KP1A 4UAFE 2MZ0A 1GPTA 4V1DC 4FSVA 5AQQA 2VY6A 5EVZA 2KGQA 4GNIA 2N2QA 3AY9A
chains in the Genus database with same CATH topology
2QW9A 4HWIA 3HSCA 3QFPA 5F1XA 1NGGA 5AQZA 5AQKA 2QWMA 3JXUA 3D2FB 3LDOA 5EX5A 5AQTA 4FL9A 2QWNA 4H5TA 3BK3C 5AQGA 3GDQA 3L4IA 3FZHA 3QI7A 5FPNA 1NGFA 1NGIA 2K35A 1NGDA 4H5WA 3FZMA 3ATUA 1NGAA 3FE1A 5EXWA 5AQHA 3FZFA 2QWLA 1BUPA 3D2FA 3L56A 5AQYA 3FZLA 3QFUA 3M3ZA 5EY4A 4H5NA 2KHOA 3C7NB 3CQXA 5AQSA 5F2RA 2QXLA 2QWRA 5AQMA 1ATRA 3IUCA 3D2EB 3LDNA 2V7ZA 3L6QA 1HPMA 1NGEA 1YUWA 2E8AA 3R2VA 2MBKA 5AQPA 1POIA 5BPLA 5BN8A 2LN8A 3SF4D 2D56A 1S3XA 3ATVA 1DKGD 2JDQD 3CW4A 3LDQA 5AQLA 5BPMA 5FPMA 2GMOA 4KBOA 3KHWA 1QQMA 1ATSA 4UADE 1KAZA 3LDLA 5AQXA 2QWPA 5BN9A 3LDPA 2YILA 3KC6A 2YIPA 5AQJA 3D2EA 5FPEA 5FPDA 3KVGA 5AQOA 2E88A 3FZKA 5AQNA 5AR0A 5F0XA 1KAYA 2MN5A 2QWQA 4UAEF 1BA1A 1NGHA 4IO8A 1QQNA 5AQWA 2E2FA 1HX1A 2QWOA 2YIOA 1BA0A 5BPNA 1NGJA 4H5VA 1QQOA 4H5RA 5AQIA 1HJOA 5AQUA 3A8YA 1KAXA 5AQVA 1NGCA 5AQFA 3C7NA 2BUPA 3GL1A 3I33A 5AQRA 1NGBA 3QMLA 4UAFE 4FSVA 5AQQA 2VY6A 5EVZA 4GNIA 3AY9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GMO A;  2VY6 A;  4UAD E;  3KC6 A;  3CW4 A;  2JDQ D;  3KHW A;  4UAF E;  3L56 A;  4UAE F;  3R2V A; 
#chains in the Genus database with same CATH topology
 2QW9 A;  2LY5 A;  4HWI A;  3HSC A;  3QFP A;  2LKB A;  5F1X A;  4AB0 A;  1NPI A;  1NGG A;  5AQZ A;  2KYQ A;  3KOZ A;  2QWM A;  1SEG A;  3JXU A;  5AQK A;  3D2F B;  5KK4 A;  3LDO A;  1T0Z A;  5EX5 A;  1SN4 A;  5AQT A;  4FL9 A;  1XRS B;  2LJ7 A;  2QWN A;  1MYN A;  3KOY A;  4H5T A;  3BK3 C;  5AQG A;  3GDQ A;  3L4I A;  1WWN A;  1FH3 A;  2LY6 A;  3FZH A;  3QI7 A;  5FPN A;  1C55 A;  4UJ0 A;  1NGF A;  1P00 A;  1NGI A;  2K35 A;  1NGD A;  1NH5 A;  4H5W A;  1BMR A;  2G2K A;  2I61 A;  3ATU A;  3E7U X;  3FZM A;  1WMT A;  1NGA A;  2GL1 A;  3FE1 A;  1SN1 A;  1NRA A;  5EXW A;  5AQH A;  1PE4 A;  1DJT A;  1PX9 A;  3FZF A;  1ZVE A;  1LQQ A;  1JKZ A;  2NY9 X;  1T1T A;  1I2V A;  1TI5 A;  1BUP A;  1UGL A;  1ZU3 A;  2QWL A;  3D2F A;  1N4N A;  3FZL A;  2NY8 X;  3L56 A;  2ATB A;  4KYP A;  5AQY A;  4CQK A;  3QFU A;  1MR4 A;  1LQH A;  3KP0 A;  3M3Z A;  1L4V A;  5EY4 A;  4H5N A;  2KHO A;  3C7N B;  3CQX A;  5AQS A;  1I2U A;  4AEI A;  2KSK A;  5F2R A;  1BCG A;  2QXL A;  2QWR A;  2YBR C;  4HE7 A;  1CHZ A;  1ATR A;  5AQM A;  3IUC A;  1AHO A;  3D2E B;  3LDN A;  2V7Z A;  1LQI A;  3L6Q A;  1HPM A;  1NGE A;  1YUW A;  2E3G A;  2E8A A;  3R2V A;  1BK8 A;  2MBK A;  5AQP A;  1POI A;  1ZYV A;  5BN8 A;  5BPL A;  2YC1 C;  1C56 A;  2LN8 A;  3SF4 D;  1VNB A;  2D56 A;  3PSM A;  1S3X A;  1ZYW A;  3ATV A;  1ICA A;  1DKG D;  2JDQ D;  1JXC A;  2SN3 A;  1B7D A;  2B3C A;  1NRB A;  3CW4 A;  3LDQ A;  2N69 A;  5AQL A;  2LT8 A;  5BPM A;  5FPM A;  2GMO A;  1ZFU A;  3GKU A;  4KBO A;  1PTX A;  2KBH A;  3KHW A;  1QQM A;  5CY0 A;  1ATS A;  1SNB A;  1KAZ A;  2LR3 A;  2M8B B;  4UAD E;  3LDL A;  1OZZ A;  5AQX A;  2KBJ A;  1OMY A;  2QWP A;  5BN9 A;  3LDP A;  2YIL A;  3KC6 A;  2YIP A;  5AQJ A;  3D2E A;  2KJA A;  5FPE A;  5FPD A;  3KVG A;  1P0A A;  2LI7 A;  5AQO A;  4AAZ A;  2E88 A;  1JZB A;  1AYJ A;  3FZK A;  5AQN A;  5AR0 A;  5F0X A;  1KAY A;  3E7R L;  2MN5 A;  1K8B A;  1NE5 A;  2QWQ A;  2BRZ A;  1CN2 A;  1WT7 A;  2E0H A;  4UAE F;  1BA1 A;  1NGH A;  4IO8 A;  1QQN A;  5AQW A;  2B68 A;  1T7A A;  2E2F A;  1HX1 A;  2ASC A;  2QWO A;  1BA0 A;  2YIO A;  2E3F A;  5BPN A;  1NGJ A;  4H5V A;  1GPS A;  3KOW A;  2A7T A;  1QQO A;  4H5R A;  5AQI A;  3KOX A;  1JZA A;  1ZVG A;  2KPY A;  1HJO A;  5AQU A;  3A8Y A;  1KAX A;  5AQV A;  1T7B A;  1NGC A;  2N2R A;  5AQF A;  1I6F A;  1ZUT A;  1T7E A;  3C7N A;  2BUP A;  1BRZ A;  2LJM A;  3GL1 A;  1B3C A;  3I33 A;  1I6G A;  5AQR A;  2YEO A;  4HHF A;  2N66 A;  1NGB A;  1KV0 A;  2KBK A;  1VNA A;  3QML A;  1DQ7 A;  3KP1 A;  4UAF E;  2MZ0 A;  1GPT A;  4V1D C;  4FSV A;  5AQQ A;  2VY6 A;  5EVZ A;  2KGQ A;  4GNI A;  2N2Q A;  3AY9 A; 
#chains in the Genus database with same CATH homology
 2QW9 A;  4HWI A;  3HSC A;  3QFP A;  5F1X A;  1NGG A;  5AQZ A;  5AQK A;  2QWM A;  3JXU A;  3D2F B;  3LDO A;  5EX5 A;  5AQT A;  4FL9 A;  2QWN A;  4H5T A;  3BK3 C;  5AQG A;  3GDQ A;  3L4I A;  3FZH A;  3QI7 A;  5FPN A;  1NGF A;  1NGI A;  2K35 A;  1NGD A;  4H5W A;  3FZM A;  3ATU A;  1NGA A;  3FE1 A;  5EXW A;  5AQH A;  3FZF A;  2QWL A;  1BUP A;  3D2F A;  3L56 A;  5AQY A;  3FZL A;  3QFU A;  3M3Z A;  5EY4 A;  4H5N A;  2KHO A;  3C7N B;  3CQX A;  5AQS A;  5F2R A;  2QXL A;  2QWR A;  5AQM A;  1ATR A;  3IUC A;  3D2E B;  3LDN A;  2V7Z A;  3L6Q A;  1HPM A;  1NGE A;  1YUW A;  2E8A A;  3R2V A;  2MBK A;  5AQP A;  1POI A;  5BPL A;  5BN8 A;  2LN8 A;  3SF4 D;  2D56 A;  1S3X A;  3ATV A;  1DKG D;  2JDQ D;  3CW4 A;  3LDQ A;  5AQL A;  5BPM A;  5FPM A;  2GMO A;  4KBO A;  3KHW A;  1QQM A;  1ATS A;  4UAD E;  1KAZ A;  3LDL A;  5AQX A;  2QWP A;  5BN9 A;  3LDP A;  2YIL A;  3KC6 A;  2YIP A;  5AQJ A;  3D2E A;  5FPE A;  5FPD A;  3KVG A;  5AQO A;  2E88 A;  3FZK A;  5AQN A;  5AR0 A;  5F0X A;  1KAY A;  2MN5 A;  2QWQ A;  4UAE F;  1BA1 A;  1NGH A;  4IO8 A;  1QQN A;  5AQW A;  2E2F A;  1HX1 A;  2QWO A;  2YIO A;  1BA0 A;  5BPN A;  1NGJ A;  4H5V A;  1QQO A;  4H5R A;  5AQI A;  1HJO A;  5AQU A;  3A8Y A;  1KAX A;  5AQV A;  1NGC A;  5AQF A;  3C7N A;  2BUP A;  3GL1 A;  3I33 A;  5AQR A;  1NGB A;  3QML A;  4UAF E;  4FSV A;  5AQQ A;  2VY6 A;  5EVZ A;  4GNI A;  3AY9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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