1I2VA

Nmr solution structures of an antifungal and antibacterial mutant of heliomicin
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
44
structure length
44
Chain Sequence
DKLIGSCVWGAVNYTSDCNGECLLRGYKGGHCGSFANVNCWCET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
source organism Heliothis virescens
publication title Solution structures of the antifungal heliomicin and a selected variant with both antibacterial and antifungal activities.
pubmed doi rcsb
molecule keywords DEFENSIN HELIOMICIN
total genus 8
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2001-02-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1i2vA00
2B68A 4HE7A 1C55A 2KYQA 1JZAA 4AB0A 4AAZA 1AYJA 2SN3A 1ZYVA 2MZ0A 1JXCA 1ZVGA 1PE4A 1NRBA 2NY8X 4V1DC 1VNBA 1DQ7A 1P0AA 1ZYWA 4HHFA 2LY5A 1KV0A 2KSKA 1NH5A 2BRZA 3E7RL 2KBKA 1ZVEA 1I2UA 1I6GA 1TI5A 1WT7A 1MR4A 2E0HA 1N4NA 1JKZA 1SEGA 2LR3A 2I61A 1P00A 1T7AA 1SN4A 1CN2A 2KGQA 3E7UX 2LT8A 1I6FA 1OMYA 1LQIA 1VNAA 1ZFUA 2A7TA 2KBJA 2LY6A 1T1TA 2E3FA 1B3CA 2M8BB 1JZBA 2N2RA 1LQHA 1MYNA 1DJTA 1ZU3A 2ASCA 1NPIA 4KYPA 1I2VA 1T7BA 5KK4A 1WMTA 1AHOA 1LQQA 1BMRA 2NY9X 1B7DA 2N66A 1PX9A 1SNBA 2LJ7A 1ZUTA 1WWNA 1BCGA 1NRAA 2YC1C 1L4VA 2B3CA 5CY0A 2ATBA 2YBRC 4UJ0A 2N69A 1BRZA 1FH3A 1BK8A 1SN1A 2LJMA 1OZZA 2KJAA 2E3GA 1GPTA 1T7EA 4AEIA 2KBHA 2KPYA 4CQKA 2LKBA 1PTXA 2LI7A 2N2QA 2YEOA 1NE5A 2GL1A 1ICAA 3PSMA 1CHZA 1C56A 1T0ZA 1GPSA
chains in the Genus database with same CATH superfamily
2B68A 4HE7A 3D2FB 2KYQA 3D2EB 1C55A 1JZAA 1HJOA 2E88A 3FZLA 4AB0A 1HPMA 3FE1A 3KVGA 4AAZA 1YUWA 5AQRA 1AYJA 1ATRA 2GMOA 3C7NB 5AQLA 2SN3A 1ZYVA 3M3ZA 2MZ0A 4H5RA 1JXCA 3FZHA 5AR0A 1ZVGA 1BUPA 3LDNA 3LDPA 5AQYA 1PE4A 1NRBA 2NY8X 1NGCA 5AQGA 2E2FA 4V1DC 1VNBA 1NGDA 3IUCA 3CW4A 5EXWA 1DQ7A 3I33A 5AQZA 1P0AA 1ZYWA 4HHFA 2LY5A 1KV0A 2KSKA 1NH5A 5AQJA 2BRZA 3E7RL 2KBKA 2QWMA 1ZVEA 5AQHA 1I2UA 2V7ZA 3LDQA 1TI5A 5BPMA 5F0XA 1I6GA 2BUPA 5F2RA 2QWRA 4KBOA 1K8BA 1HX1A 3LDLA 5BPLA 5BPNA 2E8AA 4GNIA 5AQTA 3SF4D 1WT7A 3D2EA 3D2FA 5AQQA 1NGAA 1MR4A 3L56A 3KHWA 3CQXA 3LDOA 2E0HA 1NGFA 5FPMA 2QWNA 5AQFA 2QWOA 1N4NA 1UGLA 2YILA 3ATVA 3KOZA 2QW9A 1SEGA 1JKZA 2LR3A 3FZKA 2I61A 1P00A 1T7AA 1XRSB 1SN4A 1CN2A 2KGQA 2MBKA 5AQUA 3E7UX 1I6FA 1NGEA 1OMYA 2LT8A 1LQIA 3QI7A 3AY9A 5AQPA 1QQOA 1VNAA 4UAEF 5FPDA 1ZFUA 2A7TA 3BK3C 4H5WA 2KBJA 3KOWA 3KOYA 1NGJA 5EY4A 1KAYA 1QQNA 5BN8A 5EX5A 2LY6A 1T1TA 2E3FA 1B3CA 2M8BB 5F1XA 1JZBA 2LN8A 1LQHA 2N2RA 5EVZA 1MYNA 1DJTA 1ZU3A 2ASCA 3ATUA 4IO8A 5AQXA 5BN9A 1NPIA 4KYPA 5AQSA 1I2VA 2QWQA 1T7BA 2JDQD 3JXUA 5KK4A 1NGIA 1NGBA 3R2VA 1WMTA 3C7NA 1AHOA 3A8YA 1BA0A 1LQQA 1BMRA 2NY9X 1B7DA 1ATSA 4H5TA 2N66A 1PX9A 2QWPA 1SNBA 2LJ7A 1ZUTA 1WWNA 1BCGA 1NRAA 2YC1C 1L4VA 2B3CA 3QFPA 5AQMA 5FPNA 2YIPA 2K35A 1KAZA 2VY6A 5CY0A 1KAXA 2ATBA 2YBRC 1QQMA 2D56A 4UAFE 3KP1A 2N69A 4UJ0A 1BRZA 3FZMA 1FH3A 1BK8A 4UADE 3L4IA 1POIA 1NGHA 1SN1A 2LJMA 3QFUA 4FL9A 1OZZA 2KJAA 3HSCA 3KC6A 2E3GA 3KOXA 1GPTA 1S3XA 3GDQA 4FSVA 4H5VA 5AQVA 1T7EA 3QMLA 4AEIA 2KHOA 1BA1A 2KBHA 4H5NA 2KPYA 2MN5A 2QWLA 5FPEA 5AQIA 4CQKA 2LKBA 1PTXA 2QXLA 4HWIA 5AQKA 5AQNA 5AQWA 5AQOA 2YIOA 2LI7A 2N2QA 3GL1A 2YEOA 1NE5A 3KP0A 2GL1A 3GKUA 3L6QA 1ICAA 3FZFA 3PSMA 1DKGD 1CHZA 1C56A 1T0ZA 1GPSA 1NGGA 2G2KA
chains in the Genus database with same CATH topology
2B68A 4HE7A 1C55A 2KYQA 1JZAA 4AB0A 4AAZA 1AYJA 2SN3A 1ZYVA 2MZ0A 1JXCA 1ZVGA 1PE4A 1NRBA 2NY8X 4V1DC 1VNBA 1DQ7A 1P0AA 1ZYWA 4HHFA 2LY5A 1KV0A 2KSKA 1NH5A 2BRZA 3E7RL 2KBKA 1ZVEA 1I2UA 1I6GA 1TI5A 1WT7A 1MR4A 2E0HA 1N4NA 1JKZA 1SEGA 2LR3A 2I61A 1P00A 1T7AA 1SN4A 1CN2A 2KGQA 3E7UX 2LT8A 1I6FA 1OMYA 1LQIA 1VNAA 1ZFUA 2A7TA 2KBJA 2LY6A 1T1TA 2E3FA 1B3CA 2M8BB 1JZBA 2N2RA 1LQHA 1MYNA 1DJTA 1ZU3A 2ASCA 1NPIA 4KYPA 1I2VA 1T7BA 5KK4A 1WMTA 1AHOA 1LQQA 1BMRA 2NY9X 1B7DA 2N66A 1PX9A 1SNBA 2LJ7A 1ZUTA 1WWNA 1BCGA 1NRAA 2YC1C 1L4VA 2B3CA 5CY0A 2ATBA 2YBRC 4UJ0A 2N69A 1BRZA 1FH3A 1BK8A 1SN1A 2LJMA 1OZZA 2KJAA 2E3GA 1GPTA 1T7EA 4AEIA 2KBHA 2KPYA 4CQKA 2LKBA 1PTXA 2LI7A 2N2QA 2YEOA 1NE5A 2GL1A 1ICAA 3PSMA 1CHZA 1C56A 1T0ZA 1GPSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B68 A;  4HE7 A;  1C55 A;  2KYQ A;  1JZA A;  4AB0 A;  4AAZ A;  1AYJ A;  2SN3 A;  1ZYV A;  2MZ0 A;  1JXC A;  1ZVG A;  1PE4 A;  1NRB A;  2NY8 X;  4V1D C;  1VNB A;  1DQ7 A;  1P0A A;  1ZYW A;  4HHF A;  2LY5 A;  1KV0 A;  2KSK A;  1NH5 A;  2BRZ A;  3E7R L;  2KBK A;  1ZVE A;  1I2U A;  1I6G A;  1TI5 A;  1WT7 A;  1MR4 A;  2E0H A;  1N4N A;  1JKZ A;  1SEG A;  2LR3 A;  2I61 A;  1P00 A;  1T7A A;  1SN4 A;  1CN2 A;  2KGQ A;  3E7U X;  2LT8 A;  1I6F A;  1OMY A;  1LQI A;  1VNA A;  1ZFU A;  2A7T A;  2KBJ A;  2LY6 A;  1T1T A;  2E3F A;  1B3C A;  2M8B B;  1JZB A;  2N2R A;  1LQH A;  1MYN A;  1DJT A;  1ZU3 A;  2ASC A;  1NPI A;  4KYP A;  1I2V A;  1T7B A;  5KK4 A;  1WMT A;  1AHO A;  1LQQ A;  1BMR A;  2NY9 X;  1B7D A;  2N66 A;  1PX9 A;  1SNB A;  2LJ7 A;  1ZUT A;  1WWN A;  1BCG A;  1NRA A;  2YC1 C;  1L4V A;  2B3C A;  5CY0 A;  2ATB A;  2YBR C;  4UJ0 A;  2N69 A;  1BRZ A;  1FH3 A;  1BK8 A;  1SN1 A;  2LJM A;  1OZZ A;  2KJA A;  2E3G A;  1GPT A;  1T7E A;  4AEI A;  2KBH A;  2KPY A;  4CQK A;  2LKB A;  1PTX A;  2LI7 A;  2N2Q A;  2YEO A;  1NE5 A;  2GL1 A;  1ICA A;  3PSM A;  1CHZ A;  1C56 A;  1T0Z A;  1GPS A; 
#chains in the Genus database with same CATH topology
 2B68 A;  4HE7 A;  3D2F B;  2KYQ A;  3D2E B;  1C55 A;  1JZA A;  1HJO A;  2E88 A;  3FZL A;  4AB0 A;  1HPM A;  3FE1 A;  3KVG A;  4AAZ A;  1YUW A;  5AQR A;  1AYJ A;  1ATR A;  2GMO A;  3C7N B;  5AQL A;  2SN3 A;  1ZYV A;  3M3Z A;  2MZ0 A;  4H5R A;  1JXC A;  3FZH A;  5AR0 A;  1ZVG A;  1BUP A;  3LDN A;  3LDP A;  5AQY A;  1PE4 A;  1NRB A;  2NY8 X;  1NGC A;  5AQG A;  2E2F A;  4V1D C;  1VNB A;  1NGD A;  3IUC A;  3CW4 A;  5EXW A;  1DQ7 A;  3I33 A;  5AQZ A;  1P0A A;  1ZYW A;  4HHF A;  2LY5 A;  1KV0 A;  2KSK A;  1NH5 A;  5AQJ A;  2BRZ A;  3E7R L;  2KBK A;  2QWM A;  1ZVE A;  5AQH A;  1I2U A;  2V7Z A;  3LDQ A;  1TI5 A;  5BPM A;  5F0X A;  1I6G A;  2BUP A;  5F2R A;  2QWR A;  4KBO A;  1K8B A;  1HX1 A;  3LDL A;  5BPL A;  5BPN A;  2E8A A;  4GNI A;  5AQT A;  3SF4 D;  1WT7 A;  3D2E A;  3D2F A;  5AQQ A;  1NGA A;  1MR4 A;  3L56 A;  3KHW A;  3CQX A;  3LDO A;  2E0H A;  1NGF A;  5FPM A;  2QWN A;  5AQF A;  2QWO A;  1N4N A;  1UGL A;  2YIL A;  3ATV A;  3KOZ A;  2QW9 A;  1SEG A;  1JKZ A;  2LR3 A;  3FZK A;  2I61 A;  1P00 A;  1T7A A;  1XRS B;  1SN4 A;  1CN2 A;  2KGQ A;  2MBK A;  5AQU A;  3E7U X;  1I6F A;  1NGE A;  1OMY A;  2LT8 A;  1LQI A;  3QI7 A;  3AY9 A;  5AQP A;  1QQO A;  1VNA A;  4UAE F;  5FPD A;  1ZFU A;  2A7T A;  3BK3 C;  4H5W A;  2KBJ A;  3KOW A;  3KOY A;  1NGJ A;  5EY4 A;  1KAY A;  1QQN A;  5BN8 A;  5EX5 A;  2LY6 A;  1T1T A;  2E3F A;  1B3C A;  2M8B B;  5F1X A;  1JZB A;  2LN8 A;  1LQH A;  2N2R A;  5EVZ A;  1MYN A;  1DJT A;  1ZU3 A;  2ASC A;  3ATU A;  4IO8 A;  5AQX A;  5BN9 A;  1NPI A;  4KYP A;  5AQS A;  1I2V A;  2QWQ A;  1T7B A;  2JDQ D;  3JXU A;  5KK4 A;  1NGI A;  1NGB A;  3R2V A;  1WMT A;  3C7N A;  1AHO A;  3A8Y A;  1BA0 A;  1LQQ A;  1BMR A;  2NY9 X;  1B7D A;  1ATS A;  4H5T A;  2N66 A;  1PX9 A;  2QWP A;  1SNB A;  2LJ7 A;  1ZUT A;  1WWN A;  1BCG A;  1NRA A;  2YC1 C;  1L4V A;  2B3C A;  3QFP A;  5AQM A;  5FPN A;  2YIP A;  2K35 A;  1KAZ A;  2VY6 A;  5CY0 A;  1KAX A;  2ATB A;  2YBR C;  1QQM A;  2D56 A;  4UAF E;  3KP1 A;  2N69 A;  4UJ0 A;  1BRZ A;  3FZM A;  1FH3 A;  1BK8 A;  4UAD E;  3L4I A;  1POI A;  1NGH A;  1SN1 A;  2LJM A;  3QFU A;  4FL9 A;  1OZZ A;  2KJA A;  3HSC A;  3KC6 A;  2E3G A;  3KOX A;  1GPT A;  1S3X A;  3GDQ A;  4FSV A;  4H5V A;  5AQV A;  1T7E A;  3QML A;  4AEI A;  2KHO A;  1BA1 A;  2KBH A;  4H5N A;  2KPY A;  2MN5 A;  2QWL A;  5FPE A;  5AQI A;  4CQK A;  2LKB A;  1PTX A;  2QXL A;  4HWI A;  5AQK A;  5AQN A;  5AQW A;  5AQO A;  2YIO A;  2LI7 A;  2N2Q A;  3GL1 A;  2YEO A;  1NE5 A;  3KP0 A;  2GL1 A;  3GKU A;  3L6Q A;  1ICA A;  3FZF A;  3PSM A;  1DKG D;  1CHZ A;  1C56 A;  1T0Z A;  1GPS A;  1NGG A;  2G2K A; 
#chains in the Genus database with same CATH homology
 2B68 A;  4HE7 A;  1C55 A;  2KYQ A;  1JZA A;  4AB0 A;  4AAZ A;  1AYJ A;  2SN3 A;  1ZYV A;  2MZ0 A;  1JXC A;  1ZVG A;  1PE4 A;  1NRB A;  2NY8 X;  4V1D C;  1VNB A;  1DQ7 A;  1P0A A;  1ZYW A;  4HHF A;  2LY5 A;  1KV0 A;  2KSK A;  1NH5 A;  2BRZ A;  3E7R L;  2KBK A;  1ZVE A;  1I2U A;  1I6G A;  1TI5 A;  1WT7 A;  1MR4 A;  2E0H A;  1N4N A;  1JKZ A;  1SEG A;  2LR3 A;  2I61 A;  1P00 A;  1T7A A;  1SN4 A;  1CN2 A;  2KGQ A;  3E7U X;  2LT8 A;  1I6F A;  1OMY A;  1LQI A;  1VNA A;  1ZFU A;  2A7T A;  2KBJ A;  2LY6 A;  1T1T A;  2E3F A;  1B3C A;  2M8B B;  1JZB A;  2N2R A;  1LQH A;  1MYN A;  1DJT A;  1ZU3 A;  2ASC A;  1NPI A;  4KYP A;  1I2V A;  1T7B A;  5KK4 A;  1WMT A;  1AHO A;  1LQQ A;  1BMR A;  2NY9 X;  1B7D A;  2N66 A;  1PX9 A;  1SNB A;  2LJ7 A;  1ZUT A;  1WWN A;  1BCG A;  1NRA A;  2YC1 C;  1L4V A;  2B3C A;  5CY0 A;  2ATB A;  2YBR C;  4UJ0 A;  2N69 A;  1BRZ A;  1FH3 A;  1BK8 A;  1SN1 A;  2LJM A;  1OZZ A;  2KJA A;  2E3G A;  1GPT A;  1T7E A;  4AEI A;  2KBH A;  2KPY A;  4CQK A;  2LKB A;  1PTX A;  2LI7 A;  2N2Q A;  2YEO A;  1NE5 A;  2GL1 A;  1ICA A;  3PSM A;  1CHZ A;  1C56 A;  1T0Z A;  1GPS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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