1I2VA

Nmr solution structures of an antifungal and antibacterial mutant of heliomicin
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
44
structure length
44
Chain Sequence
DKLIGSCVWGAVNYTSDCNGECLLRGYKGGHCGSFANVNCWCET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords DEFENSIN HELIOMICIN
publication title Solution structures of the antifungal heliomicin and a selected variant with both antibacterial and antifungal activities.
pubmed doi rcsb
source organism Heliothis virescens
total genus 8
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2001-02-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1i2vA00
2GL1A 2ASCA 1T7BA 2MZ0A 2KBHA 2I61A 2YEOA 1VNBA 1ZVEA 1P00A 1C55A 1ICAA 1OMYA 1GPTA 1T1TA 1LQQA 1N4NA 3PSMA 2E0HA 1AYJA 1ZYVA 1I6GA 1WMTA 1CN2A 2ATBA 1T7AA 3E7RL 4KYPA 1JZAA 2LY5A 2BRZA 2NY9X 1FH3A 1TI5A 1I6FA 1DQ7A 1BCGA 1BK8A 3E7UX 5KK4A 1SEGA 2B3CA 1BRZA 1T0ZA 2LR3A 2YBRC 1AHOA 1NRAA 2E3FA 2KSKA 1L4VA 2LKBA 2N66A 2N2QA 2KBJA 1NRBA 1ZFUA 1SN1A 4AEIA 1I2VA 1JKZA 1SN4A 5CY0A 1WT7A 1PE4A 2A7TA 1B3CA 4HE7A 2LI7A 1MYNA 1T7EA 1NPIA 2LY6A 1JZBA 2KYQA 2LJ7A 1I2UA 2KPYA 1VNAA 2KGQA 1ZUTA 2N69A 1ZU3A 1SNBA 2E3GA 2YC1C 4V1DC 1OZZA 2B68A 1P0AA 1GPSA 1BMRA 1LQIA 2M8BB 1KV0A 1ZYWA 2LT8A 2KJAA 4AAZA 2LJMA 4CQKA 4HHFA 1NE5A 1JXCA 1WWNA 2SN3A 1ZVGA 1LQHA 1CHZA 1C56A 1PX9A 4UJ0A 1B7DA 1MR4A 1PTXA 2KBKA 1DJTA 2N2RA 1NH5A 2NY8X 4AB0A
chains in the Genus database with same CATH superfamily
5FPNA 2GL1A 3IUCA 2LN8A 2ASCA 1T7BA 2KHOA 2QWLA 2MZ0A 5FPEA 5AQHA 3KC6A 2KBHA 5AQTA 1DKGD 2I61A 2YEOA 1VNBA 3LDNA 5F2RA 1ZVEA 1P00A 5AQGA 2YILA 1C55A 1BA0A 2E8AA 1ICAA 1OMYA 1POIA 1GPTA 3HSCA 3KVGA 1T1TA 4FSVA 1LQQA 5AQMA 4H5WA 1N4NA 3PSMA 3C7NB 3A8YA 3BK3C 3C7NA 3KP0A 2E0HA 2E2FA 3LDQA 3LDLA 2GMOA 3CQXA 1ZYVA 3D2EB 2QWRA 3D2EA 5AQJA 5AQYA 1AYJA 1I6GA 2QW9A 1NGFA 1WMTA 3JXUA 1CN2A 2ATBA 1S3XA 1T7AA 1ATRA 5BN8A 3E7RL 3QFUA 4KYPA 1JZAA 3FZFA 3L6QA 1KAZA 2LY5A 2BRZA 1HX1A 2NY9X 5AQFA 1BA1A 1FH3A 2MBKA 1TI5A 3KOZA 1I6FA 2MN5A 3KOYA 1DQ7A 1BCGA 2V7ZA 5BPNA 1BK8A 3E7UX 4UADE 5KK4A 1SEGA 3KHWA 5AQVA 5AQIA 5BPLA 1KAXA 5AQSA 2B3CA 5AQOA 5F1XA 1BRZA 4KBOA 1T0ZA 4H5RA 1XRSB 5AQKA 2LR3A 3M3ZA 1NGBA 3L56A 2YBRC 1AHOA 1NRAA 2E3FA 2KSKA 1L4VA 2LKBA 1QQMA 2N66A 2N2QA 3GKUA 5EX5A 1NGJA 2KBJA 1NRBA 1ZFUA 1SN1A 1NGCA 3KP1A 1NGGA 1NGEA 4AEIA 4FL9A 1I2VA 5AQQA 1ATSA 1JKZA 5FPMA 1SN4A 5CY0A 1WT7A 1PE4A 2A7TA 4H5NA 1B3CA 5AQUA 2QWNA 4UAFE 2QXLA 1QQNA 4HE7A 1YUWA 2LI7A 3ATUA 1MYNA 1T7EA 5AQXA 5AQWA 1KAYA 1NGAA 2JDQD 1NPIA 1NGDA 3LDPA 3D2FA 2LY6A 3GL1A 3KOXA 1JZBA 2KYQA 3SF4D 3FZKA 2QWPA 1HPMA 2LJ7A 1I2UA 2KPYA 3LDOA 2BUPA 1VNAA 2KGQA 5EVZA 1ZUTA 2N69A 1ZU3A 1SNBA 2E3GA 2YC1C 5BN9A 4V1DC 1OZZA 2B68A 1P0AA 3QMLA 1K8BA 3L4IA 3ATVA 1GPSA 5AR0A 1BMRA 1NGHA 1QQOA 1LQIA 2K35A 4GNIA 3CW4A 2M8BB 3KOWA 3FE1A 3GDQA 5EXWA 2QWQA 1KV0A 4HWIA 1ZYWA 2LT8A 1NGIA 5AQPA 2KJAA 5FPDA 2D56A 4H5VA 3QFPA 5AQLA 4AAZA 2VY6A 2LJMA 5AQNA 4CQKA 3FZLA 4HHFA 1NE5A 2E88A 1JXCA 2YIPA 4UAEF 3FZHA 5EY4A 3FZMA 2QWMA 3D2FB 1HJOA 5BPMA 3R2VA 1WWNA 3AY9A 4IO8A 2G2KA 2SN3A 1BUPA 1ZVGA 1UGLA 4H5TA 3I33A 3QI7A 2YIOA 5F0XA 1LQHA 1CHZA 1C56A 1PX9A 5AQRA 1B7DA 1MR4A 1PTXA 2QWOA 2KBKA 1DJTA 2N2RA 5AQZA 4UJ0A 1NH5A 2NY8X 4AB0A
chains in the Genus database with same CATH topology
2GL1A 2ASCA 1T7BA 2MZ0A 2KBHA 2I61A 2YEOA 1VNBA 1ZVEA 1P00A 1C55A 1ICAA 1OMYA 1GPTA 1T1TA 1LQQA 1N4NA 3PSMA 2E0HA 1AYJA 1ZYVA 1I6GA 1WMTA 1CN2A 2ATBA 1T7AA 3E7RL 4KYPA 1JZAA 2LY5A 2BRZA 2NY9X 1FH3A 1TI5A 1I6FA 1DQ7A 1BCGA 1BK8A 3E7UX 5KK4A 1SEGA 2B3CA 1BRZA 1T0ZA 2LR3A 2YBRC 1AHOA 1NRAA 2E3FA 2KSKA 1L4VA 2LKBA 2N66A 2N2QA 2KBJA 1NRBA 1ZFUA 1SN1A 4AEIA 1I2VA 1JKZA 1SN4A 5CY0A 1WT7A 1PE4A 2A7TA 1B3CA 4HE7A 2LI7A 1MYNA 1T7EA 1NPIA 2LY6A 1JZBA 2KYQA 2LJ7A 1I2UA 2KPYA 1VNAA 2KGQA 1ZUTA 2N69A 1ZU3A 1SNBA 2E3GA 2YC1C 4V1DC 1OZZA 2B68A 1P0AA 1GPSA 1BMRA 1LQIA 2M8BB 1KV0A 1ZYWA 2LT8A 2KJAA 4AAZA 2LJMA 4CQKA 4HHFA 1NE5A 1JXCA 1WWNA 2SN3A 1ZVGA 1LQHA 1CHZA 1C56A 1PX9A 4UJ0A 1B7DA 1MR4A 1PTXA 2KBKA 1DJTA 2N2RA 1NH5A 2NY8X 4AB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GL1 A;  2ASC A;  1T7B A;  2MZ0 A;  2KBH A;  2I61 A;  2YEO A;  1VNB A;  1ZVE A;  1P00 A;  1C55 A;  1ICA A;  1OMY A;  1GPT A;  1T1T A;  1LQQ A;  1N4N A;  3PSM A;  2E0H A;  1AYJ A;  1ZYV A;  1I6G A;  1WMT A;  1CN2 A;  2ATB A;  1T7A A;  3E7R L;  4KYP A;  1JZA A;  2LY5 A;  2BRZ A;  2NY9 X;  1FH3 A;  1TI5 A;  1I6F A;  1DQ7 A;  1BCG A;  1BK8 A;  3E7U X;  5KK4 A;  1SEG A;  2B3C A;  1BRZ A;  1T0Z A;  2LR3 A;  2YBR C;  1AHO A;  1NRA A;  2E3F A;  2KSK A;  1L4V A;  2LKB A;  2N66 A;  2N2Q A;  2KBJ A;  1NRB A;  1ZFU A;  1SN1 A;  4AEI A;  1I2V A;  1JKZ A;  1SN4 A;  5CY0 A;  1WT7 A;  1PE4 A;  2A7T A;  1B3C A;  4HE7 A;  2LI7 A;  1MYN A;  1T7E A;  1NPI A;  2LY6 A;  1JZB A;  2KYQ A;  2LJ7 A;  1I2U A;  2KPY A;  1VNA A;  2KGQ A;  1ZUT A;  2N69 A;  1ZU3 A;  1SNB A;  2E3G A;  2YC1 C;  4V1D C;  1OZZ A;  2B68 A;  1P0A A;  1GPS A;  1BMR A;  1LQI A;  2M8B B;  1KV0 A;  1ZYW A;  2LT8 A;  2KJA A;  4AAZ A;  2LJM A;  4CQK A;  4HHF A;  1NE5 A;  1JXC A;  1WWN A;  2SN3 A;  1ZVG A;  1LQH A;  1CHZ A;  1C56 A;  1PX9 A;  4UJ0 A;  1B7D A;  1MR4 A;  1PTX A;  2KBK A;  1DJT A;  2N2R A;  1NH5 A;  2NY8 X;  4AB0 A; 
#chains in the Genus database with same CATH topology
 5FPN A;  2GL1 A;  3IUC A;  2LN8 A;  2ASC A;  1T7B A;  2KHO A;  2QWL A;  2MZ0 A;  5FPE A;  5AQH A;  3KC6 A;  2KBH A;  5AQT A;  1DKG D;  2I61 A;  2YEO A;  1VNB A;  3LDN A;  5F2R A;  1ZVE A;  1P00 A;  5AQG A;  2YIL A;  1C55 A;  1BA0 A;  2E8A A;  1ICA A;  1OMY A;  1POI A;  1GPT A;  3HSC A;  3KVG A;  1T1T A;  4FSV A;  1LQQ A;  5AQM A;  4H5W A;  1N4N A;  3PSM A;  3C7N B;  3A8Y A;  3BK3 C;  3C7N A;  3KP0 A;  2E0H A;  2E2F A;  3LDQ A;  3LDL A;  2GMO A;  3CQX A;  1ZYV A;  3D2E B;  2QWR A;  3D2E A;  5AQJ A;  5AQY A;  1AYJ A;  1I6G A;  2QW9 A;  1NGF A;  1WMT A;  3JXU A;  1CN2 A;  2ATB A;  1S3X A;  1T7A A;  1ATR A;  5BN8 A;  3E7R L;  3QFU A;  4KYP A;  1JZA A;  3FZF A;  3L6Q A;  1KAZ A;  2LY5 A;  2BRZ A;  1HX1 A;  2NY9 X;  5AQF A;  1BA1 A;  1FH3 A;  2MBK A;  1TI5 A;  3KOZ A;  1I6F A;  2MN5 A;  3KOY A;  1DQ7 A;  1BCG A;  2V7Z A;  5BPN A;  1BK8 A;  3E7U X;  4UAD E;  5KK4 A;  1SEG A;  3KHW A;  5AQV A;  5AQI A;  5BPL A;  1KAX A;  5AQS A;  2B3C A;  5AQO A;  5F1X A;  1BRZ A;  4KBO A;  1T0Z A;  4H5R A;  1XRS B;  5AQK A;  2LR3 A;  3M3Z A;  1NGB A;  3L56 A;  2YBR C;  1AHO A;  1NRA A;  2E3F A;  2KSK A;  1L4V A;  2LKB A;  1QQM A;  2N66 A;  2N2Q A;  3GKU A;  5EX5 A;  1NGJ A;  2KBJ A;  1NRB A;  1ZFU A;  1SN1 A;  1NGC A;  3KP1 A;  1NGG A;  1NGE A;  4AEI A;  4FL9 A;  1I2V A;  5AQQ A;  1ATS A;  1JKZ A;  5FPM A;  1SN4 A;  5CY0 A;  1WT7 A;  1PE4 A;  2A7T A;  4H5N A;  1B3C A;  5AQU A;  2QWN A;  4UAF E;  2QXL A;  1QQN A;  4HE7 A;  1YUW A;  2LI7 A;  3ATU A;  1MYN A;  1T7E A;  5AQX A;  5AQW A;  1KAY A;  1NGA A;  2JDQ D;  1NPI A;  1NGD A;  3LDP A;  3D2F A;  2LY6 A;  3GL1 A;  3KOX A;  1JZB A;  2KYQ A;  3SF4 D;  3FZK A;  2QWP A;  1HPM A;  2LJ7 A;  1I2U A;  2KPY A;  3LDO A;  2BUP A;  1VNA A;  2KGQ A;  5EVZ A;  1ZUT A;  2N69 A;  1ZU3 A;  1SNB A;  2E3G A;  2YC1 C;  5BN9 A;  4V1D C;  1OZZ A;  2B68 A;  1P0A A;  3QML A;  1K8B A;  3L4I A;  3ATV A;  1GPS A;  5AR0 A;  1BMR A;  1NGH A;  1QQO A;  1LQI A;  2K35 A;  4GNI A;  3CW4 A;  2M8B B;  3KOW A;  3FE1 A;  3GDQ A;  5EXW A;  2QWQ A;  1KV0 A;  4HWI A;  1ZYW A;  2LT8 A;  1NGI A;  5AQP A;  2KJA A;  5FPD A;  2D56 A;  4H5V A;  3QFP A;  5AQL A;  4AAZ A;  2VY6 A;  2LJM A;  5AQN A;  4CQK A;  3FZL A;  4HHF A;  1NE5 A;  2E88 A;  1JXC A;  2YIP A;  4UAE F;  3FZH A;  5EY4 A;  3FZM A;  2QWM A;  3D2F B;  1HJO A;  5BPM A;  3R2V A;  1WWN A;  3AY9 A;  4IO8 A;  2G2K A;  2SN3 A;  1BUP A;  1ZVG A;  1UGL A;  4H5T A;  3I33 A;  3QI7 A;  2YIO A;  5F0X A;  1LQH A;  1CHZ A;  1C56 A;  1PX9 A;  5AQR A;  1B7D A;  1MR4 A;  1PTX A;  2QWO A;  2KBK A;  1DJT A;  2N2R A;  5AQZ A;  4UJ0 A;  1NH5 A;  2NY8 X;  4AB0 A; 
#chains in the Genus database with same CATH homology
 2GL1 A;  2ASC A;  1T7B A;  2MZ0 A;  2KBH A;  2I61 A;  2YEO A;  1VNB A;  1ZVE A;  1P00 A;  1C55 A;  1ICA A;  1OMY A;  1GPT A;  1T1T A;  1LQQ A;  1N4N A;  3PSM A;  2E0H A;  1AYJ A;  1ZYV A;  1I6G A;  1WMT A;  1CN2 A;  2ATB A;  1T7A A;  3E7R L;  4KYP A;  1JZA A;  2LY5 A;  2BRZ A;  2NY9 X;  1FH3 A;  1TI5 A;  1I6F A;  1DQ7 A;  1BCG A;  1BK8 A;  3E7U X;  5KK4 A;  1SEG A;  2B3C A;  1BRZ A;  1T0Z A;  2LR3 A;  2YBR C;  1AHO A;  1NRA A;  2E3F A;  2KSK A;  1L4V A;  2LKB A;  2N66 A;  2N2Q A;  2KBJ A;  1NRB A;  1ZFU A;  1SN1 A;  4AEI A;  1I2V A;  1JKZ A;  1SN4 A;  5CY0 A;  1WT7 A;  1PE4 A;  2A7T A;  1B3C A;  4HE7 A;  2LI7 A;  1MYN A;  1T7E A;  1NPI A;  2LY6 A;  1JZB A;  2KYQ A;  2LJ7 A;  1I2U A;  2KPY A;  1VNA A;  2KGQ A;  1ZUT A;  2N69 A;  1ZU3 A;  1SNB A;  2E3G A;  2YC1 C;  4V1D C;  1OZZ A;  2B68 A;  1P0A A;  1GPS A;  1BMR A;  1LQI A;  2M8B B;  1KV0 A;  1ZYW A;  2LT8 A;  2KJA A;  4AAZ A;  2LJM A;  4CQK A;  4HHF A;  1NE5 A;  1JXC A;  1WWN A;  2SN3 A;  1ZVG A;  1LQH A;  1CHZ A;  1C56 A;  1PX9 A;  4UJ0 A;  1B7D A;  1MR4 A;  1PTX A;  2KBK A;  1DJT A;  2N2R A;  1NH5 A;  2NY8 X;  4AB0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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