2LY6A

Refined solution structure of recombinant brazzein at low temperature
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
DKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Defensin-like protein
publication title Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein.
pubmed doi rcsb
source organism Pentadiplandra brazzeana
total genus 7
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2012-09-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ly6A00
1MYNA 2NY8X 1LQQA 1I2UA 2KBJA 1MR4A 2E3GA 1JZAA 1P00A 1T7EA 1NRBA 5KK4A 4UJ0A 1KV0A 1FH3A 1GPTA 2LI7A 1DJTA 1I6GA 1ZYWA 2LJMA 1JZBA 1B7DA 1PE4A 1PX9A 2ATBA 4AB0A 1ZFUA 1I6FA 1LQHA 1LQIA 1GPSA 4V1DC 2KPYA 1I2VA 1T7AA 2SN3A 1SN4A 2LY5A 1ZVGA 1ZYVA 1N4NA 2E0HA 1B3CA 1VNAA 1BMRA 2N69A 1AHOA 1ZUTA 2LJ7A 1NH5A 1OZZA 3PSMA 4AAZA 2E3FA 2KGQA 2YEOA 3E7UX 1BK8A 2ASCA 4HHFA 1WMTA 1SN1A 1DQ7A 5CY0A 2BRZA 1C56A 2KYQA 2LT8A 1T7BA 2KBHA 2YC1C 1NRAA 2KBKA 1JKZA 2LKBA 4KYPA 1BRZA 1SEGA 1JXCA 1PTXA 1CHZA 1T0ZA 2KSKA 1NE5A 2B3CA 4CQKA 1SNBA 1BCGA 1C55A 1WWNA 1VNBA 2YBRC 1T1TA 2NY9X 1ICAA 2M8BB 2A7TA 2LR3A 1P0AA 2N66A 1WT7A 2I61A 2N2RA 1OMYA 1NPIA 2GL1A 1L4VA 3E7RL 1ZU3A 1AYJA 1TI5A 4AEIA 2MZ0A 2LY6A 2B68A 1CN2A 1ZVEA 2KJAA 2N2QA 4HE7A
chains in the Genus database with same CATH superfamily
1MYNA 2E88A 2MN5A 2NY8X 1LQQA 3LDLA 1I2UA 2KBJA 3LDOA 4H5TA 1MR4A 2QWLA 5EX5A 2E3GA 3KOYA 1JZAA 1P00A 5AQVA 1POIA 1T7EA 3D2FB 5AQOA 5BPMA 1NRBA 2KHOA 3R2VA 1NGBA 4H5NA 4UAFE 4UJ0A 1KV0A 5KK4A 3GL1A 4AAZA 1FH3A 2GMOA 3KP0A 2LI7A 3FE1A 1DJTA 1GPTA 2E2FA 1I6GA 3FZLA 1ZYWA 2LJMA 3FZKA 1JZBA 3ATUA 1B7DA 1PE4A 1PX9A 4UAEF 1NGHA 2ATBA 2QWOA 1ZFUA 1I6FA 2JDQD 5AQFA 4AB0A 1LQHA 1LQIA 1GPSA 3C7NB 4V1DC 2KPYA 1I2VA 3IUCA 1T7AA 5AQMA 1NGDA 2SN3A 2QWRA 3QFPA 3SF4D 1QQMA 1HX1A 1SN4A 2LY5A 2QWNA 5AQQA 2QXLA 1ZVGA 1ZYVA 5AQLA 1N4NA 2E0HA 3KHWA 1VNAA 1B3CA 1BMRA 5EY4A 2N69A 1AHOA 3FZFA 3QI7A 5AQYA 1ZUTA 2E8AA 3LDQA 5BN9A 5FPNA 1NGFA 2LJ7A 3KP1A 3L4IA 1BUPA 1NH5A 1OZZA 1BA1A 3PSMA 2E3FA 5AR0A 5AQTA 2KGQA 5AQWA 5FPMA 2YEOA 3E7UX 1BK8A 3KOXA 3GKUA 3M3ZA 3C7NA 5FPDA 2YILA 3JXUA 3LDPA 3FZHA 2ASCA 4HHFA 3D2EB 1NGEA 1ATSA 1WMTA 3QFUA 1SN1A 4GNIA 1DQ7A 2G2KA 5CY0A 2BRZA 1C56A 3D2FA 2KYQA 4HWIA 2LT8A 4H5VA 3HSCA 1T7BA 3FZMA 3KOZA 1ATRA 1DKGD 2KBHA 2YC1C 1NRAA 1KAZA 3CQXA 3LDNA 5AQXA 5AQZA 2KBKA 3L6QA 5AQIA 1JKZA 1K8BA 3KC6A 2YIPA 2LKBA 4KYPA 4FSVA 1BRZA 5AQHA 1SEGA 2VY6A 4H5WA 5AQKA 1UGLA 2D56A 1KAXA 1JXCA 2QWQA 1PTXA 2V7ZA 5AQNA 1CHZA 1T0ZA 2QW9A 4IO8A 2KSKA 3ATVA 4H5RA 1QQNA 1NE5A 2B3CA 4CQKA 5F1XA 1NGJA 5FPEA 1NGGA 1SNBA 3GDQA 1BCGA 5BN8A 5AQJA 1C55A 1NGAA 1WWNA 1S3XA 1VNBA 2K35A 2YBRC 1T1TA 2NY9X 2MBKA 2M8BB 1NGCA 1ICAA 3AY9A 2A7TA 4KBOA 5AQGA 2LN8A 2LR3A 1HPMA 1XRSB 3BK3C 5EVZA 1NGIA 1P0AA 2N66A 2BUPA 4UADE 3QMLA 5AQSA 5F0XA 1WT7A 2I61A 3KVGA 1KAYA 2N2RA 1YUWA 1OMYA 3KOWA 5AQUA 1NPIA 2GL1A 5AQPA 3E7RL 1L4VA 5BPNA 1BA0A 1ZU3A 1QQOA 1AYJA 3CW4A 5AQRA 1TI5A 4AEIA 5EXWA 5BPLA 2QWMA 2MZ0A 5F2RA 2LY6A 3D2EA 2B68A 2QWPA 1CN2A 1ZVEA 2KJAA 3I33A 3A8YA 2N2QA 2YIOA 4HE7A 3L56A 1HJOA 4FL9A
chains in the Genus database with same CATH topology
1MYNA 2NY8X 1LQQA 1I2UA 2KBJA 1MR4A 2E3GA 1JZAA 1P00A 1T7EA 1NRBA 5KK4A 4UJ0A 1KV0A 1FH3A 1GPTA 2LI7A 1DJTA 1I6GA 1ZYWA 2LJMA 1JZBA 1B7DA 1PE4A 1PX9A 2ATBA 4AB0A 1ZFUA 1I6FA 1LQHA 1LQIA 1GPSA 4V1DC 2KPYA 1I2VA 1T7AA 2SN3A 1SN4A 2LY5A 1ZVGA 1ZYVA 1N4NA 2E0HA 1B3CA 1VNAA 1BMRA 2N69A 1AHOA 1ZUTA 2LJ7A 1NH5A 1OZZA 3PSMA 4AAZA 2E3FA 2KGQA 2YEOA 3E7UX 1BK8A 2ASCA 4HHFA 1WMTA 1SN1A 1DQ7A 5CY0A 2BRZA 1C56A 2KYQA 2LT8A 1T7BA 2KBHA 2YC1C 1NRAA 2KBKA 1JKZA 2LKBA 4KYPA 1BRZA 1SEGA 1JXCA 1PTXA 1CHZA 1T0ZA 2KSKA 1NE5A 2B3CA 4CQKA 1SNBA 1BCGA 1C55A 1WWNA 1VNBA 2YBRC 1T1TA 2NY9X 1ICAA 2M8BB 2A7TA 2LR3A 1P0AA 2N66A 1WT7A 2I61A 2N2RA 1OMYA 1NPIA 2GL1A 1L4VA 3E7RL 1ZU3A 1AYJA 1TI5A 4AEIA 2MZ0A 2LY6A 2B68A 1CN2A 1ZVEA 2KJAA 2N2QA 4HE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MYN A;  2NY8 X;  1LQQ A;  1I2U A;  2KBJ A;  1MR4 A;  2E3G A;  1JZA A;  1P00 A;  1T7E A;  1NRB A;  5KK4 A;  4UJ0 A;  1KV0 A;  1FH3 A;  1GPT A;  2LI7 A;  1DJT A;  1I6G A;  1ZYW A;  2LJM A;  1JZB A;  1B7D A;  1PE4 A;  1PX9 A;  2ATB A;  4AB0 A;  1ZFU A;  1I6F A;  1LQH A;  1LQI A;  1GPS A;  4V1D C;  2KPY A;  1I2V A;  1T7A A;  2SN3 A;  1SN4 A;  2LY5 A;  1ZVG A;  1ZYV A;  1N4N A;  2E0H A;  1B3C A;  1VNA A;  1BMR A;  2N69 A;  1AHO A;  1ZUT A;  2LJ7 A;  1NH5 A;  1OZZ A;  3PSM A;  4AAZ A;  2E3F A;  2KGQ A;  2YEO A;  3E7U X;  1BK8 A;  2ASC A;  4HHF A;  1WMT A;  1SN1 A;  1DQ7 A;  5CY0 A;  2BRZ A;  1C56 A;  2KYQ A;  2LT8 A;  1T7B A;  2KBH A;  2YC1 C;  1NRA A;  2KBK A;  1JKZ A;  2LKB A;  4KYP A;  1BRZ A;  1SEG A;  1JXC A;  1PTX A;  1CHZ A;  1T0Z A;  2KSK A;  1NE5 A;  2B3C A;  4CQK A;  1SNB A;  1BCG A;  1C55 A;  1WWN A;  1VNB A;  2YBR C;  1T1T A;  2NY9 X;  1ICA A;  2M8B B;  2A7T A;  2LR3 A;  1P0A A;  2N66 A;  1WT7 A;  2I61 A;  2N2R A;  1OMY A;  1NPI A;  2GL1 A;  1L4V A;  3E7R L;  1ZU3 A;  1AYJ A;  1TI5 A;  4AEI A;  2MZ0 A;  2LY6 A;  2B68 A;  1CN2 A;  1ZVE A;  2KJA A;  2N2Q A;  4HE7 A; 
#chains in the Genus database with same CATH topology
 1MYN A;  2E88 A;  2MN5 A;  2NY8 X;  1LQQ A;  3LDL A;  1I2U A;  2KBJ A;  3LDO A;  4H5T A;  1MR4 A;  2QWL A;  5EX5 A;  2E3G A;  3KOY A;  1JZA A;  1P00 A;  5AQV A;  1POI A;  1T7E A;  3D2F B;  5AQO A;  5BPM A;  1NRB A;  2KHO A;  3R2V A;  1NGB A;  4H5N A;  4UAF E;  4UJ0 A;  1KV0 A;  5KK4 A;  3GL1 A;  4AAZ A;  1FH3 A;  2GMO A;  3KP0 A;  2LI7 A;  3FE1 A;  1DJT A;  1GPT A;  2E2F A;  1I6G A;  3FZL A;  1ZYW A;  2LJM A;  3FZK A;  1JZB A;  3ATU A;  1B7D A;  1PE4 A;  1PX9 A;  4UAE F;  1NGH A;  2ATB A;  2QWO A;  1ZFU A;  1I6F A;  2JDQ D;  5AQF A;  4AB0 A;  1LQH A;  1LQI A;  1GPS A;  3C7N B;  4V1D C;  2KPY A;  1I2V A;  3IUC A;  1T7A A;  5AQM A;  1NGD A;  2SN3 A;  2QWR A;  3QFP A;  3SF4 D;  1QQM A;  1HX1 A;  1SN4 A;  2LY5 A;  2QWN A;  5AQQ A;  2QXL A;  1ZVG A;  1ZYV A;  5AQL A;  1N4N A;  2E0H A;  3KHW A;  1VNA A;  1B3C A;  1BMR A;  5EY4 A;  2N69 A;  1AHO A;  3FZF A;  3QI7 A;  5AQY A;  1ZUT A;  2E8A A;  3LDQ A;  5BN9 A;  5FPN A;  1NGF A;  2LJ7 A;  3KP1 A;  3L4I A;  1BUP A;  1NH5 A;  1OZZ A;  1BA1 A;  3PSM A;  2E3F A;  5AR0 A;  5AQT A;  2KGQ A;  5AQW A;  5FPM A;  2YEO A;  3E7U X;  1BK8 A;  3KOX A;  3GKU A;  3M3Z A;  3C7N A;  5FPD A;  2YIL A;  3JXU A;  3LDP A;  3FZH A;  2ASC A;  4HHF A;  3D2E B;  1NGE A;  1ATS A;  1WMT A;  3QFU A;  1SN1 A;  4GNI A;  1DQ7 A;  2G2K A;  5CY0 A;  2BRZ A;  1C56 A;  3D2F A;  2KYQ A;  4HWI A;  2LT8 A;  4H5V A;  3HSC A;  1T7B A;  3FZM A;  3KOZ A;  1ATR A;  1DKG D;  2KBH A;  2YC1 C;  1NRA A;  1KAZ A;  3CQX A;  3LDN A;  5AQX A;  5AQZ A;  2KBK A;  3L6Q A;  5AQI A;  1JKZ A;  1K8B A;  3KC6 A;  2YIP A;  2LKB A;  4KYP A;  4FSV A;  1BRZ A;  5AQH A;  1SEG A;  2VY6 A;  4H5W A;  5AQK A;  1UGL A;  2D56 A;  1KAX A;  1JXC A;  2QWQ A;  1PTX A;  2V7Z A;  5AQN A;  1CHZ A;  1T0Z A;  2QW9 A;  4IO8 A;  2KSK A;  3ATV A;  4H5R A;  1QQN A;  1NE5 A;  2B3C A;  4CQK A;  5F1X A;  1NGJ A;  5FPE A;  1NGG A;  1SNB A;  3GDQ A;  1BCG A;  5BN8 A;  5AQJ A;  1C55 A;  1NGA A;  1WWN A;  1S3X A;  1VNB A;  2K35 A;  2YBR C;  1T1T A;  2NY9 X;  2MBK A;  2M8B B;  1NGC A;  1ICA A;  3AY9 A;  2A7T A;  4KBO A;  5AQG A;  2LN8 A;  2LR3 A;  1HPM A;  1XRS B;  3BK3 C;  5EVZ A;  1NGI A;  1P0A A;  2N66 A;  2BUP A;  4UAD E;  3QML A;  5AQS A;  5F0X A;  1WT7 A;  2I61 A;  3KVG A;  1KAY A;  2N2R A;  1YUW A;  1OMY A;  3KOW A;  5AQU A;  1NPI A;  2GL1 A;  5AQP A;  3E7R L;  1L4V A;  5BPN A;  1BA0 A;  1ZU3 A;  1QQO A;  1AYJ A;  3CW4 A;  5AQR A;  1TI5 A;  4AEI A;  5EXW A;  5BPL A;  2QWM A;  2MZ0 A;  5F2R A;  2LY6 A;  3D2E A;  2B68 A;  2QWP A;  1CN2 A;  1ZVE A;  2KJA A;  3I33 A;  3A8Y A;  2N2Q A;  2YIO A;  4HE7 A;  3L56 A;  1HJO A;  4FL9 A; 
#chains in the Genus database with same CATH homology
 1MYN A;  2NY8 X;  1LQQ A;  1I2U A;  2KBJ A;  1MR4 A;  2E3G A;  1JZA A;  1P00 A;  1T7E A;  1NRB A;  5KK4 A;  4UJ0 A;  1KV0 A;  1FH3 A;  1GPT A;  2LI7 A;  1DJT A;  1I6G A;  1ZYW A;  2LJM A;  1JZB A;  1B7D A;  1PE4 A;  1PX9 A;  2ATB A;  4AB0 A;  1ZFU A;  1I6F A;  1LQH A;  1LQI A;  1GPS A;  4V1D C;  2KPY A;  1I2V A;  1T7A A;  2SN3 A;  1SN4 A;  2LY5 A;  1ZVG A;  1ZYV A;  1N4N A;  2E0H A;  1B3C A;  1VNA A;  1BMR A;  2N69 A;  1AHO A;  1ZUT A;  2LJ7 A;  1NH5 A;  1OZZ A;  3PSM A;  4AAZ A;  2E3F A;  2KGQ A;  2YEO A;  3E7U X;  1BK8 A;  2ASC A;  4HHF A;  1WMT A;  1SN1 A;  1DQ7 A;  5CY0 A;  2BRZ A;  1C56 A;  2KYQ A;  2LT8 A;  1T7B A;  2KBH A;  2YC1 C;  1NRA A;  2KBK A;  1JKZ A;  2LKB A;  4KYP A;  1BRZ A;  1SEG A;  1JXC A;  1PTX A;  1CHZ A;  1T0Z A;  2KSK A;  1NE5 A;  2B3C A;  4CQK A;  1SNB A;  1BCG A;  1C55 A;  1WWN A;  1VNB A;  2YBR C;  1T1T A;  2NY9 X;  1ICA A;  2M8B B;  2A7T A;  2LR3 A;  1P0A A;  2N66 A;  1WT7 A;  2I61 A;  2N2R A;  1OMY A;  1NPI A;  2GL1 A;  1L4V A;  3E7R L;  1ZU3 A;  1AYJ A;  1TI5 A;  4AEI A;  2MZ0 A;  2LY6 A;  2B68 A;  1CN2 A;  1ZVE A;  2KJA A;  2N2Q A;  4HE7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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