4HHFA

Crystal structure of chemically synthesized scorpion alpha-toxin od1
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
65
structure length
65
Chain Sequence
GVRDAYIADDKNCVYTCASNGYCNTECTKNGAESGYCQWIGRYGNACWCIKLPDEVPIRIPGKCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Alpha-toxin OD1
publication title Chemical engineering and structural and pharmacological characterization of the alpha-scorpion toxin OD1.
pubmed doi rcsb
total genus 17
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4hhfA00
2LY6A 1NRBA 1T0ZA 1T7EA 1T7BA 2MZ0A 2LT8A 1TI5A 1JKZA 2KPYA 1CHZA 1B7DA 2ATBA 4KYPA 2M8BB 2SN3A 4CQKA 1PTXA 1P00A 1MYNA 1I6GA 1N4NA 1I2UA 2B3CA 1NPIA 2KYQA 2LKBA 1JXCA 1SN1A 1JZAA 1PX9A 2N2QA 1I6FA 1ICAA 2N69A 2KBHA 4AEIA 1DQ7A 1KV0A 1ZYVA 1T7AA 2KBJA 4HE7A 2KBKA 2YBRC 1ZYWA 1LQQA 1GPSA 1ZVGA 2YC1C 4V1DC 5CY0A 1VNAA 1LQHA 2NY9X 1NRAA 1ZU3A 1FH3A 1ZFUA 2E0HA 1NE5A 1C55A 1OZZA 1SN4A 2LJMA 4UJ0A 1WT7A 2GL1A 2LI7A 2NY8X 1T1TA 1VNBA 1BMRA 4AAZA 2B68A 1AYJA 2BRZA 2KJAA 2I61A 1BK8A 1SNBA 1PE4A 1CN2A 1OMYA 1C56A 3PSMA 1WWNA 1GPTA 1ZUTA 1ZVEA 2A7TA 2ASCA 1AHOA 4HHFA 1DJTA 2KGQA 2N2RA 1BCGA 3E7UX 2LR3A 2E3FA 4AB0A 1WMTA 1I2VA 1MR4A 1LQIA 1L4VA 1BRZA 2KSKA 2E3GA 3E7RL 2YEOA 1JZBA 1P0AA 5KK4A 1SEGA 1NH5A 1B3CA 2LJ7A 2LY5A 2N66A
chains in the Genus database with same CATH superfamily
1BA0A 2LY6A 3FZLA 3KHWA 1NRBA 2MBKA 3KC6A 1T0ZA 2V7ZA 2GMOA 1S3XA 3KOYA 1ATRA 1T7EA 3JXUA 5EXWA 5BPMA 3D2EA 1T7BA 3KVGA 3QI7A 5F2RA 2MZ0A 2LT8A 1TI5A 2E88A 3GDQA 1UGLA 2KPYA 1JKZA 3M3ZA 4GNIA 1CHZA 3KP0A 5AQTA 1B7DA 1HPMA 3I33A 3LDPA 2K35A 1NGHA 2ATBA 3CQXA 4KYPA 4UAFE 3KOZA 3R2VA 4UADE 5AQWA 5F1XA 2M8BB 2SN3A 3LDLA 3A8YA 3KOWA 5AQQA 4CQKA 1PTXA 1KAXA 3LDQA 2JDQD 2KHOA 5AQKA 2QW9A 5BN8A 1P00A 1MYNA 1NGJA 1N4NA 3LDNA 5AQZA 1I6GA 3BK3C 1I2UA 1ATSA 2B3CA 1NPIA 2KYQA 2LKBA 2QXLA 2QWPA 5EVZA 5FPNA 2QWRA 4H5NA 1JXCA 1SN1A 1NGCA 2YIPA 4IO8A 1QQOA 5BN9A 5FPDA 1JZAA 1HX1A 1PX9A 2N2QA 4FL9A 1I6FA 4H5TA 2N69A 5AR0A 2KBHA 1ICAA 5AQFA 4AEIA 2QWOA 1DQ7A 5AQOA 1BA1A 2E2FA 3FE1A 1KV0A 1NGDA 3D2EB 1ZYVA 3FZKA 5EY4A 1T7AA 2KBJA 3CW4A 2E8AA 2LN8A 4HE7A 2KBKA 2YBRC 5AQVA 1ZYWA 1LQQA 1GPSA 1ZVGA 2YC1C 1NGBA 5AQHA 3L56A 2QWLA 5AQSA 4V1DC 3QMLA 5CY0A 1VNAA 3ATUA 1LQHA 5FPEA 2NY9X 5AQJA 1NRAA 5AQIA 3HSCA 1ZU3A 2YIOA 1FH3A 1ZFUA 1NGIA 1NE5A 2E0HA 1C55A 1OZZA 1SN4A 2LJMA 4HWIA 5AQPA 4UJ0A 1WT7A 2GL1A 1XRSB 2LI7A 5BPLA 2NY8X 3FZFA 5AQMA 1NGGA 2YILA 5AQUA 1T1TA 5AQXA 3GL1A 3KOXA 1K8BA 1VNBA 1BMRA 4AAZA 2B68A 1AYJA 2BRZA 3SF4D 2KJAA 5EX5A 3C7NA 2I61A 3ATVA 3GKUA 1BK8A 1SNBA 1PE4A 1CN2A 1OMYA 1C56A 5AQLA 3PSMA 4KBOA 3QFUA 3D2FA 5AQGA 1POIA 1WWNA 1GPTA 5BPNA 1ZUTA 1ZVEA 1NGFA 2A7TA 1HJOA 2ASCA 4H5VA 3FZHA 5F0XA 2VY6A 1AHOA 4HHFA 1DJTA 2KGQA 2N2RA 1BCGA 3QFPA 3IUCA 3E7UX 2LR3A 2E3FA 3FZMA 4UAEF 4AB0A 1WMTA 2G2KA 2QWMA 4H5RA 5FPMA 3L6QA 4H5WA 1I2VA 1BUPA 1LQIA 1MR4A 1QQNA 2BUPA 2MN5A 4FSVA 3AY9A 2D56A 1L4VA 3KP1A 1KAZA 5AQRA 1DKGD 1YUWA 1BRZA 2KSKA 1NGEA 1QQMA 2E3GA 5AQNA 3E7RL 2YEOA 1JZBA 1P0AA 5KK4A 1NGAA 1SEGA 3LDOA 5AQYA 3C7NB 1NH5A 1B3CA 2QWQA 2LJ7A 2QWNA 2LY5A 3L4IA 1KAYA 3D2FB 2N66A
chains in the Genus database with same CATH topology
2LY6A 1NRBA 1T0ZA 1T7EA 1T7BA 2MZ0A 2LT8A 1TI5A 1JKZA 2KPYA 1CHZA 1B7DA 2ATBA 4KYPA 2M8BB 2SN3A 4CQKA 1PTXA 1P00A 1MYNA 1I6GA 1N4NA 1I2UA 2B3CA 1NPIA 2KYQA 2LKBA 1JXCA 1SN1A 1JZAA 1PX9A 2N2QA 1I6FA 1ICAA 2N69A 2KBHA 4AEIA 1DQ7A 1KV0A 1ZYVA 1T7AA 2KBJA 4HE7A 2KBKA 2YBRC 1ZYWA 1LQQA 1GPSA 1ZVGA 2YC1C 4V1DC 5CY0A 1VNAA 1LQHA 2NY9X 1NRAA 1ZU3A 1FH3A 1ZFUA 2E0HA 1NE5A 1C55A 1OZZA 1SN4A 2LJMA 4UJ0A 1WT7A 2GL1A 2LI7A 2NY8X 1T1TA 1VNBA 1BMRA 4AAZA 2B68A 1AYJA 2BRZA 2KJAA 2I61A 1BK8A 1SNBA 1PE4A 1CN2A 1OMYA 1C56A 3PSMA 1WWNA 1GPTA 1ZUTA 1ZVEA 2A7TA 2ASCA 1AHOA 4HHFA 1DJTA 2KGQA 2N2RA 1BCGA 3E7UX 2LR3A 2E3FA 4AB0A 1WMTA 1I2VA 1MR4A 1LQIA 1L4VA 1BRZA 2KSKA 2E3GA 3E7RL 2YEOA 1JZBA 1P0AA 5KK4A 1SEGA 1NH5A 1B3CA 2LJ7A 2LY5A 2N66A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LY6 A;  1NRB A;  1T0Z A;  1T7E A;  1T7B A;  2MZ0 A;  2LT8 A;  1TI5 A;  1JKZ A;  2KPY A;  1CHZ A;  1B7D A;  2ATB A;  4KYP A;  2M8B B;  2SN3 A;  4CQK A;  1PTX A;  1P00 A;  1MYN A;  1I6G A;  1N4N A;  1I2U A;  2B3C A;  1NPI A;  2KYQ A;  2LKB A;  1JXC A;  1SN1 A;  1JZA A;  1PX9 A;  2N2Q A;  1I6F A;  1ICA A;  2N69 A;  2KBH A;  4AEI A;  1DQ7 A;  1KV0 A;  1ZYV A;  1T7A A;  2KBJ A;  4HE7 A;  2KBK A;  2YBR C;  1ZYW A;  1LQQ A;  1GPS A;  1ZVG A;  2YC1 C;  4V1D C;  5CY0 A;  1VNA A;  1LQH A;  2NY9 X;  1NRA A;  1ZU3 A;  1FH3 A;  1ZFU A;  2E0H A;  1NE5 A;  1C55 A;  1OZZ A;  1SN4 A;  2LJM A;  4UJ0 A;  1WT7 A;  2GL1 A;  2LI7 A;  2NY8 X;  1T1T A;  1VNB A;  1BMR A;  4AAZ A;  2B68 A;  1AYJ A;  2BRZ A;  2KJA A;  2I61 A;  1BK8 A;  1SNB A;  1PE4 A;  1CN2 A;  1OMY A;  1C56 A;  3PSM A;  1WWN A;  1GPT A;  1ZUT A;  1ZVE A;  2A7T A;  2ASC A;  1AHO A;  4HHF A;  1DJT A;  2KGQ A;  2N2R A;  1BCG A;  3E7U X;  2LR3 A;  2E3F A;  4AB0 A;  1WMT A;  1I2V A;  1MR4 A;  1LQI A;  1L4V A;  1BRZ A;  2KSK A;  2E3G A;  3E7R L;  2YEO A;  1JZB A;  1P0A A;  5KK4 A;  1SEG A;  1NH5 A;  1B3C A;  2LJ7 A;  2LY5 A;  2N66 A; 
#chains in the Genus database with same CATH topology
 1BA0 A;  2LY6 A;  3FZL A;  3KHW A;  1NRB A;  2MBK A;  3KC6 A;  1T0Z A;  2V7Z A;  2GMO A;  1S3X A;  3KOY A;  1ATR A;  1T7E A;  3JXU A;  5EXW A;  5BPM A;  3D2E A;  1T7B A;  3KVG A;  3QI7 A;  5F2R A;  2MZ0 A;  2LT8 A;  1TI5 A;  2E88 A;  3GDQ A;  1UGL A;  2KPY A;  1JKZ A;  3M3Z A;  4GNI A;  1CHZ A;  3KP0 A;  5AQT A;  1B7D A;  1HPM A;  3I33 A;  3LDP A;  2K35 A;  1NGH A;  2ATB A;  3CQX A;  4KYP A;  4UAF E;  3KOZ A;  3R2V A;  4UAD E;  5AQW A;  5F1X A;  2M8B B;  2SN3 A;  3LDL A;  3A8Y A;  3KOW A;  5AQQ A;  4CQK A;  1PTX A;  1KAX A;  3LDQ A;  2JDQ D;  2KHO A;  5AQK A;  2QW9 A;  5BN8 A;  1P00 A;  1MYN A;  1NGJ A;  1N4N A;  3LDN A;  5AQZ A;  1I6G A;  3BK3 C;  1I2U A;  1ATS A;  2B3C A;  1NPI A;  2KYQ A;  2LKB A;  2QXL A;  2QWP A;  5EVZ A;  5FPN A;  2QWR A;  4H5N A;  1JXC A;  1SN1 A;  1NGC A;  2YIP A;  4IO8 A;  1QQO A;  5BN9 A;  5FPD A;  1JZA A;  1HX1 A;  1PX9 A;  2N2Q A;  4FL9 A;  1I6F A;  4H5T A;  2N69 A;  5AR0 A;  2KBH A;  1ICA A;  5AQF A;  4AEI A;  2QWO A;  1DQ7 A;  5AQO A;  1BA1 A;  2E2F A;  3FE1 A;  1KV0 A;  1NGD A;  3D2E B;  1ZYV A;  3FZK A;  5EY4 A;  1T7A A;  2KBJ A;  3CW4 A;  2E8A A;  2LN8 A;  4HE7 A;  2KBK A;  2YBR C;  5AQV A;  1ZYW A;  1LQQ A;  1GPS A;  1ZVG A;  2YC1 C;  1NGB A;  5AQH A;  3L56 A;  2QWL A;  5AQS A;  4V1D C;  3QML A;  5CY0 A;  1VNA A;  3ATU A;  1LQH A;  5FPE A;  2NY9 X;  5AQJ A;  1NRA A;  5AQI A;  3HSC A;  1ZU3 A;  2YIO A;  1FH3 A;  1ZFU A;  1NGI A;  1NE5 A;  2E0H A;  1C55 A;  1OZZ A;  1SN4 A;  2LJM A;  4HWI A;  5AQP A;  4UJ0 A;  1WT7 A;  2GL1 A;  1XRS B;  2LI7 A;  5BPL A;  2NY8 X;  3FZF A;  5AQM A;  1NGG A;  2YIL A;  5AQU A;  1T1T A;  5AQX A;  3GL1 A;  3KOX A;  1K8B A;  1VNB A;  1BMR A;  4AAZ A;  2B68 A;  1AYJ A;  2BRZ A;  3SF4 D;  2KJA A;  5EX5 A;  3C7N A;  2I61 A;  3ATV A;  3GKU A;  1BK8 A;  1SNB A;  1PE4 A;  1CN2 A;  1OMY A;  1C56 A;  5AQL A;  3PSM A;  4KBO A;  3QFU A;  3D2F A;  5AQG A;  1POI A;  1WWN A;  1GPT A;  5BPN A;  1ZUT A;  1ZVE A;  1NGF A;  2A7T A;  1HJO A;  2ASC A;  4H5V A;  3FZH A;  5F0X A;  2VY6 A;  1AHO A;  4HHF A;  1DJT A;  2KGQ A;  2N2R A;  1BCG A;  3QFP A;  3IUC A;  3E7U X;  2LR3 A;  2E3F A;  3FZM A;  4UAE F;  4AB0 A;  1WMT A;  2G2K A;  2QWM A;  4H5R A;  5FPM A;  3L6Q A;  4H5W A;  1I2V A;  1BUP A;  1LQI A;  1MR4 A;  1QQN A;  2BUP A;  2MN5 A;  4FSV A;  3AY9 A;  2D56 A;  1L4V A;  3KP1 A;  1KAZ A;  5AQR A;  1DKG D;  1YUW A;  1BRZ A;  2KSK A;  1NGE A;  1QQM A;  2E3G A;  5AQN A;  3E7R L;  2YEO A;  1JZB A;  1P0A A;  5KK4 A;  1NGA A;  1SEG A;  3LDO A;  5AQY A;  3C7N B;  1NH5 A;  1B3C A;  2QWQ A;  2LJ7 A;  2QWN A;  2LY5 A;  3L4I A;  1KAY A;  3D2F B;  2N66 A; 
#chains in the Genus database with same CATH homology
 2LY6 A;  1NRB A;  1T0Z A;  1T7E A;  1T7B A;  2MZ0 A;  2LT8 A;  1TI5 A;  1JKZ A;  2KPY A;  1CHZ A;  1B7D A;  2ATB A;  4KYP A;  2M8B B;  2SN3 A;  4CQK A;  1PTX A;  1P00 A;  1MYN A;  1I6G A;  1N4N A;  1I2U A;  2B3C A;  1NPI A;  2KYQ A;  2LKB A;  1JXC A;  1SN1 A;  1JZA A;  1PX9 A;  2N2Q A;  1I6F A;  1ICA A;  2N69 A;  2KBH A;  4AEI A;  1DQ7 A;  1KV0 A;  1ZYV A;  1T7A A;  2KBJ A;  4HE7 A;  2KBK A;  2YBR C;  1ZYW A;  1LQQ A;  1GPS A;  1ZVG A;  2YC1 C;  4V1D C;  5CY0 A;  1VNA A;  1LQH A;  2NY9 X;  1NRA A;  1ZU3 A;  1FH3 A;  1ZFU A;  2E0H A;  1NE5 A;  1C55 A;  1OZZ A;  1SN4 A;  2LJM A;  4UJ0 A;  1WT7 A;  2GL1 A;  2LI7 A;  2NY8 X;  1T1T A;  1VNB A;  1BMR A;  4AAZ A;  2B68 A;  1AYJ A;  2BRZ A;  2KJA A;  2I61 A;  1BK8 A;  1SNB A;  1PE4 A;  1CN2 A;  1OMY A;  1C56 A;  3PSM A;  1WWN A;  1GPT A;  1ZUT A;  1ZVE A;  2A7T A;  2ASC A;  1AHO A;  4HHF A;  1DJT A;  2KGQ A;  2N2R A;  1BCG A;  3E7U X;  2LR3 A;  2E3F A;  4AB0 A;  1WMT A;  1I2V A;  1MR4 A;  1LQI A;  1L4V A;  1BRZ A;  2KSK A;  2E3G A;  3E7R L;  2YEO A;  1JZB A;  1P0A A;  5KK4 A;  1SEG A;  1NH5 A;  1B3C A;  2LJ7 A;  2LY5 A;  2N66 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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