1L4VA

Solution structure of sapecin
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic
molecule keywords Sapecin
publication title 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
pubmed doi rcsb
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1l4vA00
1NPIA 3E7RL 2LY5A 5KK4A 1T7BA 1WT7A 1NH5A 1PE4A 1SNBA 1DQ7A 2LT8A 1NRAA 1T0ZA 1NE5A 1JXCA 1LQQA 1T7AA 1ZUTA 1AYJA 1PX9A 2YC1C 1DJTA 1T7EA 4AB0A 1ICAA 1T1TA 1L4VA 1ZVEA 2B3CA 1I6GA 2LR3A 1OMYA 2KSKA 1C56A 2N2RA 2N69A 1GPSA 1SEGA 2LJMA 1BK8A 1VNAA 2KPYA 2LKBA 2SN3A 4AEIA 4UJ0A 1NRBA 1MYNA 3PSMA 2M8BB 1P0AA 1I2UA 1PTXA 1BCGA 1JZBA 1SN4A 5CY0A 1WWNA 2I61A 1LQHA 4AAZA 4CQKA 2N2QA 3E7UX 2E3GA 1VNBA 1ZFUA 2BRZA 2KGQA 4HHFA 1BMRA 2KYQA 2YEOA 1ZYVA 2MZ0A 2NY8X 2KBJA 1ZU3A 2KBKA 1MR4A 1ZYWA 1N4NA 2A7TA 1JZAA 2N66A 1B3CA 4HE7A 2LJ7A 4KYPA 1CN2A 2E3FA 2NY9X 1GPTA 1B7DA 1WMTA 1C55A 2E0HA 1P00A 2KJAA 4V1DC 2ATBA 2LY6A 1I2VA 1SN1A 2LI7A 2GL1A 1KV0A 1OZZA 1TI5A 2YBRC 2B68A 1CHZA 1FH3A 1I6FA 1AHOA 1LQIA 1ZVGA 2ASCA 1BRZA 1JKZA 2KBHA
chains in the Genus database with same CATH superfamily
2QWPA 3CW4A 1NPIA 5F2RA 3E7RL 5AQOA 3KOXA 2LY5A 3L56A 1T7BA 1WT7A 3L4IA 5KK4A 3R2VA 1NH5A 1PE4A 1SNBA 2BUPA 1NGDA 1DQ7A 1BA1A 2LT8A 1NRAA 3A8YA 1T0ZA 1NE5A 1JXCA 4H5RA 1LQQA 1T7AA 5AQVA 1ZUTA 5BN8A 1AYJA 1PX9A 2YC1C 2YIPA 1DJTA 1KAZA 1T7EA 3FZFA 3IUCA 4AB0A 4UAFE 1T1TA 1ICAA 3KHWA 1L4VA 1ZVEA 3GKUA 1KAYA 2B3CA 3M3ZA 5FPMA 1I6GA 2QWOA 2LR3A 2QWMA 1OMYA 2KSKA 2E88A 1NGAA 1C56A 2E2FA 2N2RA 1XRSB 5AQHA 5AQLA 2V7ZA 2N69A 3LDLA 1GPSA 1SEGA 2LJMA 3QFUA 1BK8A 3D2EA 1HX1A 4KBOA 1VNAA 4UAEF 2KPYA 2LKBA 1ATSA 2SN3A 5AQJA 4AEIA 4UJ0A 1NRBA 1MYNA 3PSMA 3FZMA 2M8BB 5AQFA 5EY4A 1P0AA 5AQGA 5EXWA 2K35A 1I2UA 5AQIA 3KOZA 1KAXA 2QWNA 5FPNA 5AQZA 1PTXA 1BCGA 2QWQA 3C7NA 1HJOA 1JZBA 3D2EB 5AQXA 1SN4A 5BPLA 1POIA 1UGLA 5AQSA 5CY0A 1WWNA 5AQYA 2I61A 1LQHA 1NGCA 5AQQA 4AAZA 5F0XA 1S3XA 5AR0A 4GNIA 3KP1A 5EVZA 4CQKA 1NGGA 1QQNA 2N2QA 2D56A 2E3GA 3E7UX 1VNBA 5AQRA 3ATUA 3FZHA 1ZFUA 5FPEA 2BRZA 3LDNA 2KGQA 1QQOA 4HHFA 3C7NB 3GDQA 3FE1A 2KHOA 1BMRA 1NGJA 4HWIA 1NGFA 2JDQD 2KYQA 2YEOA 4H5NA 2YILA 1ZYVA 3QMLA 1QQMA 3L6QA 2MZ0A 5AQWA 2NY8X 2KBJA 3KC6A 2QWRA 3D2FA 1ZU3A 5EX5A 4UADE 2QWLA 1BUPA 1DKGD 1BA0A 2KBKA 1MR4A 1YUWA 2MBKA 1HPMA 3LDPA 5AQMA 4H5VA 1ZYWA 2QW9A 1N4NA 2A7TA 1JZAA 2N66A 1B3CA 2VY6A 4HE7A 2LJ7A 1NGBA 3QI7A 4KYPA 2E3FA 3KVGA 1CN2A 2NY9X 1GPTA 1B7DA 1WMTA 1C55A 5BPMA 5AQNA 2E0HA 1P00A 2KJAA 4V1DC 5AQUA 3BK3C 5AQPA 2ATBA 3GL1A 1NGEA 2LY6A 1ATRA 1I2VA 3KP0A 2YIOA 2QXLA 5F1XA 5BN9A 4FL9A 2MN5A 4H5WA 4FSVA 3SF4D 3LDOA 3KOWA 3LDQA 1SN1A 3D2FB 3AY9A 2LI7A 2E8AA 2GL1A 3FZKA 3KOYA 4H5TA 1KV0A 1OZZA 1TI5A 2YBRC 3JXUA 3ATVA 5AQTA 5AQKA 1NGIA 2B68A 1CHZA 5FPDA 2GMOA 4IO8A 2G2KA 3FZLA 1FH3A 1I6FA 2LN8A 5BPNA 1AHOA 1LQIA 1NGHA 1ZVGA 3CQXA 3HSCA 2ASCA 3I33A 3QFPA 1BRZA 1JKZA 1K8BA 2KBHA
chains in the Genus database with same CATH topology
1NPIA 3E7RL 2LY5A 5KK4A 1T7BA 1WT7A 1NH5A 1PE4A 1SNBA 1DQ7A 2LT8A 1NRAA 1T0ZA 1NE5A 1JXCA 1LQQA 1T7AA 1ZUTA 1AYJA 1PX9A 2YC1C 1DJTA 1T7EA 4AB0A 1ICAA 1T1TA 1L4VA 1ZVEA 2B3CA 1I6GA 2LR3A 1OMYA 2KSKA 1C56A 2N2RA 2N69A 1GPSA 1SEGA 2LJMA 1BK8A 1VNAA 2KPYA 2LKBA 2SN3A 4AEIA 4UJ0A 1NRBA 1MYNA 3PSMA 2M8BB 1P0AA 1I2UA 1PTXA 1BCGA 1JZBA 1SN4A 5CY0A 1WWNA 2I61A 1LQHA 4AAZA 4CQKA 2N2QA 3E7UX 2E3GA 1VNBA 1ZFUA 2BRZA 2KGQA 4HHFA 1BMRA 2KYQA 2YEOA 1ZYVA 2MZ0A 2NY8X 2KBJA 1ZU3A 2KBKA 1MR4A 1ZYWA 1N4NA 2A7TA 1JZAA 2N66A 1B3CA 4HE7A 2LJ7A 4KYPA 1CN2A 2E3FA 2NY9X 1GPTA 1B7DA 1WMTA 1C55A 2E0HA 1P00A 2KJAA 4V1DC 2ATBA 2LY6A 1I2VA 1SN1A 2LI7A 2GL1A 1KV0A 1OZZA 1TI5A 2YBRC 2B68A 1CHZA 1FH3A 1I6FA 1AHOA 1LQIA 1ZVGA 2ASCA 1BRZA 1JKZA 2KBHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NPI A;  3E7R L;  2LY5 A;  5KK4 A;  1T7B A;  1WT7 A;  1NH5 A;  1PE4 A;  1SNB A;  1DQ7 A;  2LT8 A;  1NRA A;  1T0Z A;  1NE5 A;  1JXC A;  1LQQ A;  1T7A A;  1ZUT A;  1AYJ A;  1PX9 A;  2YC1 C;  1DJT A;  1T7E A;  4AB0 A;  1ICA A;  1T1T A;  1L4V A;  1ZVE A;  2B3C A;  1I6G A;  2LR3 A;  1OMY A;  2KSK A;  1C56 A;  2N2R A;  2N69 A;  1GPS A;  1SEG A;  2LJM A;  1BK8 A;  1VNA A;  2KPY A;  2LKB A;  2SN3 A;  4AEI A;  4UJ0 A;  1NRB A;  1MYN A;  3PSM A;  2M8B B;  1P0A A;  1I2U A;  1PTX A;  1BCG A;  1JZB A;  1SN4 A;  5CY0 A;  1WWN A;  2I61 A;  1LQH A;  4AAZ A;  4CQK A;  2N2Q A;  3E7U X;  2E3G A;  1VNB A;  1ZFU A;  2BRZ A;  2KGQ A;  4HHF A;  1BMR A;  2KYQ A;  2YEO A;  1ZYV A;  2MZ0 A;  2NY8 X;  2KBJ A;  1ZU3 A;  2KBK A;  1MR4 A;  1ZYW A;  1N4N A;  2A7T A;  1JZA A;  2N66 A;  1B3C A;  4HE7 A;  2LJ7 A;  4KYP A;  1CN2 A;  2E3F A;  2NY9 X;  1GPT A;  1B7D A;  1WMT A;  1C55 A;  2E0H A;  1P00 A;  2KJA A;  4V1D C;  2ATB A;  2LY6 A;  1I2V A;  1SN1 A;  2LI7 A;  2GL1 A;  1KV0 A;  1OZZ A;  1TI5 A;  2YBR C;  2B68 A;  1CHZ A;  1FH3 A;  1I6F A;  1AHO A;  1LQI A;  1ZVG A;  2ASC A;  1BRZ A;  1JKZ A;  2KBH A; 
#chains in the Genus database with same CATH topology
 2QWP A;  3CW4 A;  1NPI A;  5F2R A;  3E7R L;  5AQO A;  3KOX A;  2LY5 A;  3L56 A;  1T7B A;  1WT7 A;  3L4I A;  5KK4 A;  3R2V A;  1NH5 A;  1PE4 A;  1SNB A;  2BUP A;  1NGD A;  1DQ7 A;  1BA1 A;  2LT8 A;  1NRA A;  3A8Y A;  1T0Z A;  1NE5 A;  1JXC A;  4H5R A;  1LQQ A;  1T7A A;  5AQV A;  1ZUT A;  5BN8 A;  1AYJ A;  1PX9 A;  2YC1 C;  2YIP A;  1DJT A;  1KAZ A;  1T7E A;  3FZF A;  3IUC A;  4AB0 A;  4UAF E;  1T1T A;  1ICA A;  3KHW A;  1L4V A;  1ZVE A;  3GKU A;  1KAY A;  2B3C A;  3M3Z A;  5FPM A;  1I6G A;  2QWO A;  2LR3 A;  2QWM A;  1OMY A;  2KSK A;  2E88 A;  1NGA A;  1C56 A;  2E2F A;  2N2R A;  1XRS B;  5AQH A;  5AQL A;  2V7Z A;  2N69 A;  3LDL A;  1GPS A;  1SEG A;  2LJM A;  3QFU A;  1BK8 A;  3D2E A;  1HX1 A;  4KBO A;  1VNA A;  4UAE F;  2KPY A;  2LKB A;  1ATS A;  2SN3 A;  5AQJ A;  4AEI A;  4UJ0 A;  1NRB A;  1MYN A;  3PSM A;  3FZM A;  2M8B B;  5AQF A;  5EY4 A;  1P0A A;  5AQG A;  5EXW A;  2K35 A;  1I2U A;  5AQI A;  3KOZ A;  1KAX A;  2QWN A;  5FPN A;  5AQZ A;  1PTX A;  1BCG A;  2QWQ A;  3C7N A;  1HJO A;  1JZB A;  3D2E B;  5AQX A;  1SN4 A;  5BPL A;  1POI A;  1UGL A;  5AQS A;  5CY0 A;  1WWN A;  5AQY A;  2I61 A;  1LQH A;  1NGC A;  5AQQ A;  4AAZ A;  5F0X A;  1S3X A;  5AR0 A;  4GNI A;  3KP1 A;  5EVZ A;  4CQK A;  1NGG A;  1QQN A;  2N2Q A;  2D56 A;  2E3G A;  3E7U X;  1VNB A;  5AQR A;  3ATU A;  3FZH A;  1ZFU A;  5FPE A;  2BRZ A;  3LDN A;  2KGQ A;  1QQO A;  4HHF A;  3C7N B;  3GDQ A;  3FE1 A;  2KHO A;  1BMR A;  1NGJ A;  4HWI A;  1NGF A;  2JDQ D;  2KYQ A;  2YEO A;  4H5N A;  2YIL A;  1ZYV A;  3QML A;  1QQM A;  3L6Q A;  2MZ0 A;  5AQW A;  2NY8 X;  2KBJ A;  3KC6 A;  2QWR A;  3D2F A;  1ZU3 A;  5EX5 A;  4UAD E;  2QWL A;  1BUP A;  1DKG D;  1BA0 A;  2KBK A;  1MR4 A;  1YUW A;  2MBK A;  1HPM A;  3LDP A;  5AQM A;  4H5V A;  1ZYW A;  2QW9 A;  1N4N A;  2A7T A;  1JZA A;  2N66 A;  1B3C A;  2VY6 A;  4HE7 A;  2LJ7 A;  1NGB A;  3QI7 A;  4KYP A;  2E3F A;  3KVG A;  1CN2 A;  2NY9 X;  1GPT A;  1B7D A;  1WMT A;  1C55 A;  5BPM A;  5AQN A;  2E0H A;  1P00 A;  2KJA A;  4V1D C;  5AQU A;  3BK3 C;  5AQP A;  2ATB A;  3GL1 A;  1NGE A;  2LY6 A;  1ATR A;  1I2V A;  3KP0 A;  2YIO A;  2QXL A;  5F1X A;  5BN9 A;  4FL9 A;  2MN5 A;  4H5W A;  4FSV A;  3SF4 D;  3LDO A;  3KOW A;  3LDQ A;  1SN1 A;  3D2F B;  3AY9 A;  2LI7 A;  2E8A A;  2GL1 A;  3FZK A;  3KOY A;  4H5T A;  1KV0 A;  1OZZ A;  1TI5 A;  2YBR C;  3JXU A;  3ATV A;  5AQT A;  5AQK A;  1NGI A;  2B68 A;  1CHZ A;  5FPD A;  2GMO A;  4IO8 A;  2G2K A;  3FZL A;  1FH3 A;  1I6F A;  2LN8 A;  5BPN A;  1AHO A;  1LQI A;  1NGH A;  1ZVG A;  3CQX A;  3HSC A;  2ASC A;  3I33 A;  3QFP A;  1BRZ A;  1JKZ A;  1K8B A;  2KBH A; 
#chains in the Genus database with same CATH homology
 1NPI A;  3E7R L;  2LY5 A;  5KK4 A;  1T7B A;  1WT7 A;  1NH5 A;  1PE4 A;  1SNB A;  1DQ7 A;  2LT8 A;  1NRA A;  1T0Z A;  1NE5 A;  1JXC A;  1LQQ A;  1T7A A;  1ZUT A;  1AYJ A;  1PX9 A;  2YC1 C;  1DJT A;  1T7E A;  4AB0 A;  1ICA A;  1T1T A;  1L4V A;  1ZVE A;  2B3C A;  1I6G A;  2LR3 A;  1OMY A;  2KSK A;  1C56 A;  2N2R A;  2N69 A;  1GPS A;  1SEG A;  2LJM A;  1BK8 A;  1VNA A;  2KPY A;  2LKB A;  2SN3 A;  4AEI A;  4UJ0 A;  1NRB A;  1MYN A;  3PSM A;  2M8B B;  1P0A A;  1I2U A;  1PTX A;  1BCG A;  1JZB A;  1SN4 A;  5CY0 A;  1WWN A;  2I61 A;  1LQH A;  4AAZ A;  4CQK A;  2N2Q A;  3E7U X;  2E3G A;  1VNB A;  1ZFU A;  2BRZ A;  2KGQ A;  4HHF A;  1BMR A;  2KYQ A;  2YEO A;  1ZYV A;  2MZ0 A;  2NY8 X;  2KBJ A;  1ZU3 A;  2KBK A;  1MR4 A;  1ZYW A;  1N4N A;  2A7T A;  1JZA A;  2N66 A;  1B3C A;  4HE7 A;  2LJ7 A;  4KYP A;  1CN2 A;  2E3F A;  2NY9 X;  1GPT A;  1B7D A;  1WMT A;  1C55 A;  2E0H A;  1P00 A;  2KJA A;  4V1D C;  2ATB A;  2LY6 A;  1I2V A;  1SN1 A;  2LI7 A;  2GL1 A;  1KV0 A;  1OZZ A;  1TI5 A;  2YBR C;  2B68 A;  1CHZ A;  1FH3 A;  1I6F A;  1AHO A;  1LQI A;  1ZVG A;  2ASC A;  1BRZ A;  1JKZ A;  2KBH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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