1L4VA

Solution structure of sapecin
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Sapecin
publication title 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
pubmed doi rcsb
molecule tags Antibiotic
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1l4vA00
1ZVGA 1FH3A 2ASCA 1JXCA 1AYJA 1P00A 1VNAA 2KPYA 4KYPA 2LJMA 2N69A 1C56A 2B68A 2LJ7A 2MZ0A 2GL1A 4AAZA 4AEIA 1WT7A 1ZU3A 1BRZA 1PE4A 2M8BB 2KBJA 2LY6A 2YEOA 1PTXA 1NE5A 1T0ZA 1ICAA 1T7AA 2YBRC 2E0HA 5KK4A 1GPTA 2KGQA 1I2UA 1SEGA 1JZBA 1NRBA 2A7TA 1DJTA 1CHZA 2I61A 2SN3A 1C55A 1WWNA 1ZYVA 2KBKA 1JZAA 1KV0A 1MYNA 4V1DC 4CQKA 1SNBA 2N2QA 2KBHA 3PSMA 1DQ7A 2E3GA 1PX9A 1L4VA 1I2VA 1ZVEA 3E7RL 1SN1A 2N66A 1N4NA 1ZFUA 1MR4A 4HHFA 1CN2A 1AHOA 2ATBA 1P0AA 4UJ0A 2NY8X 1B3CA 2LI7A 1I6GA 1ZUTA 1NH5A 2LKBA 2LR3A 2N2RA 1T7BA 1SN4A 2KJAA 1BMRA 1JKZA 2LT8A 1OZZA 1NRAA 1BCGA 2YC1C 2E3FA 1B7DA 1GPSA 4AB0A 2KYQA 1T1TA 4HE7A 3E7UX 1I6FA 2NY9X 1WMTA 1LQHA 1NPIA 2BRZA 2LY5A 1BK8A 5CY0A 1LQIA 1OMYA 1TI5A 2B3CA 1ZYWA 2KSKA 1LQQA 1VNBA 1T7EA
chains in the Genus database with same CATH superfamily
1YUWA 1ZVGA 5BN9A 1FH3A 1BA1A 2ASCA 1JXCA 2G2KA 2QW9A 3HSCA 2JDQD 1AYJA 1P00A 1VNAA 2QWOA 2QWQA 2KPYA 3C7NB 2MBKA 3KOWA 3BK3C 5AQFA 4KYPA 3QMLA 2LJMA 2N69A 1C56A 1XRSB 2B68A 3ATVA 5AQUA 1NGDA 2LJ7A 3D2FB 2MZ0A 2GL1A 4AAZA 1POIA 1S3XA 5BPNA 3FZKA 4AEIA 1NGFA 1QQNA 1WT7A 1ZU3A 3A8YA 1BRZA 1PE4A 2M8BB 3FZLA 5F2RA 1BUPA 1KAXA 2KBJA 2LY6A 2KHOA 3KP0A 1DKGD 4GNIA 5AQKA 5FPDA 3SF4D 2YEOA 5EVZA 3ATUA 1PTXA 3QFPA 2YIOA 1NE5A 5AQZA 1T0ZA 5EY4A 1ICAA 2QWLA 5AQTA 1T7AA 5AQSA 2YBRC 4H5VA 1BA0A 5F1XA 4UAEF 2BUPA 2E88A 2E0HA 3C7NA 3M3ZA 5KK4A 2YILA 1GPTA 2KGQA 4H5TA 5EXWA 1KAZA 3KC6A 2E2FA 5AQIA 1SEGA 1I2UA 3IUCA 3KVGA 1JZBA 5AQVA 1NGJA 1NRBA 3D2FA 5AQRA 5BPMA 2A7TA 5BN8A 1DJTA 3KOXA 5AQMA 3LDQA 1CHZA 5FPMA 3GL1A 3D2EB 2I61A 4FSVA 2SN3A 1C55A 3KP1A 5FPEA 1WWNA 1NGHA 3LDPA 3LDOA 3JXUA 1ZYVA 2KBKA 1JZAA 1KV0A 1MYNA 4V1DC 4CQKA 1SNBA 2N2QA 5AR0A 4KBOA 2KBHA 3PSMA 1DQ7A 2E3GA 1PX9A 5AQXA 1L4VA 1I2VA 3L4IA 1ZVEA 3E7RL 3KOYA 1SN1A 3QI7A 3LDLA 2N66A 5FPNA 3FE1A 3R2VA 1N4NA 3CW4A 1QQMA 1ZFUA 3FZMA 1MR4A 4H5RA 4HHFA 5BPLA 1CN2A 5AQOA 1AHOA 1NGGA 2GMOA 2ATBA 3L6QA 1P0AA 4UJ0A 1HJOA 2NY8X 1UGLA 5EX5A 1B3CA 2LI7A 2QWMA 1I6GA 5AQYA 2QWNA 3D2EA 5F0XA 3I33A 4H5NA 3FZHA 1ZUTA 3CQXA 2YIPA 1K8BA 1NGBA 3AY9A 3LDNA 1NH5A 2LKBA 2LR3A 2N2RA 4UADE 1T7BA 2QXLA 1SN4A 2KJAA 2LN8A 4UAFE 3KOZA 5AQJA 5AQPA 2E8AA 2V7ZA 4FL9A 1BMRA 2MN5A 5AQQA 1ZYWA 1JKZA 2LT8A 5AQHA 1OZZA 5AQGA 1NRAA 3GKUA 1BCGA 2YC1C 2E3FA 1B7DA 3GDQA 4AB0A 2KYQA 1GPSA 1HX1A 1T1TA 2KSKA 1HPMA 2D56A 4HE7A 1NGAA 3E7UX 2NY9X 1WMTA 3FZFA 1LQHA 4H5WA 1NPIA 1NGCA 5AQLA 2BRZA 2VY6A 1ATSA 2K35A 1KAYA 2LY5A 1BK8A 2QWRA 5AQWA 1NGIA 5CY0A 1LQIA 1OMYA 4HWIA 1TI5A 2QWPA 3QFUA 1ATRA 5AQNA 4IO8A 3KHWA 1NGEA 2B3CA 1I6FA 1QQOA 3L56A 1LQQA 1VNBA 1T7EA
chains in the Genus database with same CATH topology
1ZVGA 1FH3A 2ASCA 1JXCA 1AYJA 1P00A 1VNAA 2KPYA 4KYPA 2LJMA 2N69A 1C56A 2B68A 2LJ7A 2MZ0A 2GL1A 4AAZA 4AEIA 1WT7A 1ZU3A 1BRZA 1PE4A 2M8BB 2KBJA 2LY6A 2YEOA 1PTXA 1NE5A 1T0ZA 1ICAA 1T7AA 2YBRC 2E0HA 5KK4A 1GPTA 2KGQA 1I2UA 1SEGA 1JZBA 1NRBA 2A7TA 1DJTA 1CHZA 2I61A 2SN3A 1C55A 1WWNA 1ZYVA 2KBKA 1JZAA 1KV0A 1MYNA 4V1DC 4CQKA 1SNBA 2N2QA 2KBHA 3PSMA 1DQ7A 2E3GA 1PX9A 1L4VA 1I2VA 1ZVEA 3E7RL 1SN1A 2N66A 1N4NA 1ZFUA 1MR4A 4HHFA 1CN2A 1AHOA 2ATBA 1P0AA 4UJ0A 2NY8X 1B3CA 2LI7A 1I6GA 1ZUTA 1NH5A 2LKBA 2LR3A 2N2RA 1T7BA 1SN4A 2KJAA 1BMRA 1JKZA 2LT8A 1OZZA 1NRAA 1BCGA 2YC1C 2E3FA 1B7DA 1GPSA 4AB0A 2KYQA 1T1TA 4HE7A 3E7UX 1I6FA 2NY9X 1WMTA 1LQHA 1NPIA 2BRZA 2LY5A 1BK8A 5CY0A 1LQIA 1OMYA 1TI5A 2B3CA 1ZYWA 2KSKA 1LQQA 1VNBA 1T7EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZVG A;  1FH3 A;  2ASC A;  1JXC A;  1AYJ A;  1P00 A;  1VNA A;  2KPY A;  4KYP A;  2LJM A;  2N69 A;  1C56 A;  2B68 A;  2LJ7 A;  2MZ0 A;  2GL1 A;  4AAZ A;  4AEI A;  1WT7 A;  1ZU3 A;  1BRZ A;  1PE4 A;  2M8B B;  2KBJ A;  2LY6 A;  2YEO A;  1PTX A;  1NE5 A;  1T0Z A;  1ICA A;  1T7A A;  2YBR C;  2E0H A;  5KK4 A;  1GPT A;  2KGQ A;  1I2U A;  1SEG A;  1JZB A;  1NRB A;  2A7T A;  1DJT A;  1CHZ A;  2I61 A;  2SN3 A;  1C55 A;  1WWN A;  1ZYV A;  2KBK A;  1JZA A;  1KV0 A;  1MYN A;  4V1D C;  4CQK A;  1SNB A;  2N2Q A;  2KBH A;  3PSM A;  1DQ7 A;  2E3G A;  1PX9 A;  1L4V A;  1I2V A;  1ZVE A;  3E7R L;  1SN1 A;  2N66 A;  1N4N A;  1ZFU A;  1MR4 A;  4HHF A;  1CN2 A;  1AHO A;  2ATB A;  1P0A A;  4UJ0 A;  2NY8 X;  1B3C A;  2LI7 A;  1I6G A;  1ZUT A;  1NH5 A;  2LKB A;  2LR3 A;  2N2R A;  1T7B A;  1SN4 A;  2KJA A;  1BMR A;  1JKZ A;  2LT8 A;  1OZZ A;  1NRA A;  1BCG A;  2YC1 C;  2E3F A;  1B7D A;  1GPS A;  4AB0 A;  2KYQ A;  1T1T A;  4HE7 A;  3E7U X;  1I6F A;  2NY9 X;  1WMT A;  1LQH A;  1NPI A;  2BRZ A;  2LY5 A;  1BK8 A;  5CY0 A;  1LQI A;  1OMY A;  1TI5 A;  2B3C A;  1ZYW A;  2KSK A;  1LQQ A;  1VNB A;  1T7E A; 
#chains in the Genus database with same CATH topology
 1YUW A;  1ZVG A;  5BN9 A;  1FH3 A;  1BA1 A;  2ASC A;  1JXC A;  2G2K A;  2QW9 A;  3HSC A;  2JDQ D;  1AYJ A;  1P00 A;  1VNA A;  2QWO A;  2QWQ A;  2KPY A;  3C7N B;  2MBK A;  3KOW A;  3BK3 C;  5AQF A;  4KYP A;  3QML A;  2LJM A;  2N69 A;  1C56 A;  1XRS B;  2B68 A;  3ATV A;  5AQU A;  1NGD A;  2LJ7 A;  3D2F B;  2MZ0 A;  2GL1 A;  4AAZ A;  1POI A;  1S3X A;  5BPN A;  3FZK A;  4AEI A;  1NGF A;  1QQN A;  1WT7 A;  1ZU3 A;  3A8Y A;  1BRZ A;  1PE4 A;  2M8B B;  3FZL A;  5F2R A;  1BUP A;  1KAX A;  2KBJ A;  2LY6 A;  2KHO A;  3KP0 A;  1DKG D;  4GNI A;  5AQK A;  5FPD A;  3SF4 D;  2YEO A;  5EVZ A;  3ATU A;  1PTX A;  3QFP A;  2YIO A;  1NE5 A;  5AQZ A;  1T0Z A;  5EY4 A;  1ICA A;  2QWL A;  5AQT A;  1T7A A;  5AQS A;  2YBR C;  4H5V A;  1BA0 A;  5F1X A;  4UAE F;  2BUP A;  2E88 A;  2E0H A;  3C7N A;  3M3Z A;  5KK4 A;  2YIL A;  1GPT A;  2KGQ A;  4H5T A;  5EXW A;  1KAZ A;  3KC6 A;  2E2F A;  5AQI A;  1SEG A;  1I2U A;  3IUC A;  3KVG A;  1JZB A;  5AQV A;  1NGJ A;  1NRB A;  3D2F A;  5AQR A;  5BPM A;  2A7T A;  5BN8 A;  1DJT A;  3KOX A;  5AQM A;  3LDQ A;  1CHZ A;  5FPM A;  3GL1 A;  3D2E B;  2I61 A;  4FSV A;  2SN3 A;  1C55 A;  3KP1 A;  5FPE A;  1WWN A;  1NGH A;  3LDP A;  3LDO A;  3JXU A;  1ZYV A;  2KBK A;  1JZA A;  1KV0 A;  1MYN A;  4V1D C;  4CQK A;  1SNB A;  2N2Q A;  5AR0 A;  4KBO A;  2KBH A;  3PSM A;  1DQ7 A;  2E3G A;  1PX9 A;  5AQX A;  1L4V A;  1I2V A;  3L4I A;  1ZVE A;  3E7R L;  3KOY A;  1SN1 A;  3QI7 A;  3LDL A;  2N66 A;  5FPN A;  3FE1 A;  3R2V A;  1N4N A;  3CW4 A;  1QQM A;  1ZFU A;  3FZM A;  1MR4 A;  4H5R A;  4HHF A;  5BPL A;  1CN2 A;  5AQO A;  1AHO A;  1NGG A;  2GMO A;  2ATB A;  3L6Q A;  1P0A A;  4UJ0 A;  1HJO A;  2NY8 X;  1UGL A;  5EX5 A;  1B3C A;  2LI7 A;  2QWM A;  1I6G A;  5AQY A;  2QWN A;  3D2E A;  5F0X A;  3I33 A;  4H5N A;  3FZH A;  1ZUT A;  3CQX A;  2YIP A;  1K8B A;  1NGB A;  3AY9 A;  3LDN A;  1NH5 A;  2LKB A;  2LR3 A;  2N2R A;  4UAD E;  1T7B A;  2QXL A;  1SN4 A;  2KJA A;  2LN8 A;  4UAF E;  3KOZ A;  5AQJ A;  5AQP A;  2E8A A;  2V7Z A;  4FL9 A;  1BMR A;  2MN5 A;  5AQQ A;  1ZYW A;  1JKZ A;  2LT8 A;  5AQH A;  1OZZ A;  5AQG A;  1NRA A;  3GKU A;  1BCG A;  2YC1 C;  2E3F A;  1B7D A;  3GDQ A;  4AB0 A;  2KYQ A;  1GPS A;  1HX1 A;  1T1T A;  2KSK A;  1HPM A;  2D56 A;  4HE7 A;  1NGA A;  3E7U X;  2NY9 X;  1WMT A;  3FZF A;  1LQH A;  4H5W A;  1NPI A;  1NGC A;  5AQL A;  2BRZ A;  2VY6 A;  1ATS A;  2K35 A;  1KAY A;  2LY5 A;  1BK8 A;  2QWR A;  5AQW A;  1NGI A;  5CY0 A;  1LQI A;  1OMY A;  4HWI A;  1TI5 A;  2QWP A;  3QFU A;  1ATR A;  5AQN A;  4IO8 A;  3KHW A;  1NGE A;  2B3C A;  1I6F A;  1QQO A;  3L56 A;  1LQQ A;  1VNB A;  1T7E A; 
#chains in the Genus database with same CATH homology
 1ZVG A;  1FH3 A;  2ASC A;  1JXC A;  1AYJ A;  1P00 A;  1VNA A;  2KPY A;  4KYP A;  2LJM A;  2N69 A;  1C56 A;  2B68 A;  2LJ7 A;  2MZ0 A;  2GL1 A;  4AAZ A;  4AEI A;  1WT7 A;  1ZU3 A;  1BRZ A;  1PE4 A;  2M8B B;  2KBJ A;  2LY6 A;  2YEO A;  1PTX A;  1NE5 A;  1T0Z A;  1ICA A;  1T7A A;  2YBR C;  2E0H A;  5KK4 A;  1GPT A;  2KGQ A;  1I2U A;  1SEG A;  1JZB A;  1NRB A;  2A7T A;  1DJT A;  1CHZ A;  2I61 A;  2SN3 A;  1C55 A;  1WWN A;  1ZYV A;  2KBK A;  1JZA A;  1KV0 A;  1MYN A;  4V1D C;  4CQK A;  1SNB A;  2N2Q A;  2KBH A;  3PSM A;  1DQ7 A;  2E3G A;  1PX9 A;  1L4V A;  1I2V A;  1ZVE A;  3E7R L;  1SN1 A;  2N66 A;  1N4N A;  1ZFU A;  1MR4 A;  4HHF A;  1CN2 A;  1AHO A;  2ATB A;  1P0A A;  4UJ0 A;  2NY8 X;  1B3C A;  2LI7 A;  1I6G A;  1ZUT A;  1NH5 A;  2LKB A;  2LR3 A;  2N2R A;  1T7B A;  1SN4 A;  2KJA A;  1BMR A;  1JKZ A;  2LT8 A;  1OZZ A;  1NRA A;  1BCG A;  2YC1 C;  2E3F A;  1B7D A;  1GPS A;  4AB0 A;  2KYQ A;  1T1T A;  4HE7 A;  3E7U X;  1I6F A;  2NY9 X;  1WMT A;  1LQH A;  1NPI A;  2BRZ A;  2LY5 A;  1BK8 A;  5CY0 A;  1LQI A;  1OMY A;  1TI5 A;  2B3C A;  1ZYW A;  2KSK A;  1LQQ A;  1VNB A;  1T7E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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