4CQKA

Crystal structure of ligand-bound nad1
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Phosphoinositide-Mediated Oligomerization of a Defensin Induces Cell Lysis.
pubmed doi rcsb
molecule tags Plant protein
total genus 14
structure length 47
sequence length 47
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N
ec nomenclature
pdb deposition date 2014-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4cqkA00
1B3CA 1BK8A 1ZFUA 1CN2A 1N4NA 1PX9A 2I61A 3E7UX 2BRZA 1BRZA 1ZUTA 2NY8X 1NRBA 1ZYVA 1BMRA 2M8BB 1P00A 1OMYA 2LR3A 1T7BA 2B3CA 1MYNA 1ZVEA 3E7RL 1LQHA 2YEOA 1LQIA 2YC1C 5KK4A 2E3GA 4HHFA 1AYJA 4AAZA 1WWNA 1VNAA 1CHZA 2LY6A 1WT7A 2LT8A 1NH5A 2LKBA 1NPIA 1GPSA 1ZVGA 2KGQA 2KPYA 1JXCA 2KJAA 2YBRC 2KBHA 1DQ7A 2N66A 1T1TA 1WMTA 1FH3A 1PTXA 1GPTA 2ATBA 2GL1A 2LJ7A 2E0HA 1I6FA 4KYPA 1BCGA 4HE7A 2KBJA 2KSKA 1ZYWA 1OZZA 1T0ZA 1AHOA 1JZBA 2KYQA 2B68A 3PSMA 1C55A 1JKZA 4AEIA 1P0AA 2LY5A 4AB0A 5CY0A 2N69A 1T7AA 2N2QA 1SEGA 1JZAA 2A7TA 1NRAA 2N2RA 1ICAA 1L4VA 2ASCA 2SN3A 1PE4A 2LI7A 1I2UA 2MZ0A 4V1DC 1NE5A 1I2VA 1SN4A 1SN1A 1I6GA 1B7DA 1SNBA 1LQQA 1KV0A 1VNBA 2E3FA 2KBKA 1ZU3A 2LJMA 2NY9X 1T7EA 4UJ0A 1DJTA 4CQKA 1C56A 1MR4A 1TI5A
chains in the Genus database with same CATH superfamily
3KVGA 1B3CA 1BK8A 1NGJA 5AQSA 1ZFUA 1CN2A 2MN5A 1N4NA 3GL1A 1PX9A 3D2EB 3ATUA 1BUPA 2GMOA 2I61A 2QWRA 1HJOA 1QQOA 3E7UX 2BRZA 1S3XA 3CW4A 1BRZA 2QWPA 1ZUTA 2NY8X 3SF4D 1NRBA 1ZYVA 3FZFA 5AQHA 2KHOA 1XRSB 2M8BB 5AQUA 1BMRA 4UADE 3D2FB 1P00A 4H5RA 1OMYA 2LR3A 1T7BA 3C7NB 5FPMA 3QFUA 3M3ZA 2B3CA 1MYNA 1ZVEA 3E7RL 5AQVA 3HSCA 2MBKA 1LQHA 2YEOA 4H5NA 1LQIA 5AQRA 1NGBA 1HX1A 1KAXA 2K35A 2YC1C 4UAEF 2QXLA 2E3GA 5AQZA 5KK4A 2QWQA 3I33A 1YUWA 4HHFA 1AYJA 3D2FA 3KOWA 3A8YA 4AAZA 1WWNA 1VNAA 1BA0A 1CHZA 2LY6A 3C7NA 5EY4A 3L6QA 1WT7A 2LT8A 3FE1A 1NH5A 5BPLA 2LKBA 1NGHA 1NPIA 1GPSA 1ZVGA 5AQXA 2YIPA 2KGQA 3L56A 2KPYA 5AQFA 1JXCA 2KJAA 3KP1A 3R2VA 5BN9A 3FZMA 2YBRC 2KBHA 2QW9A 2D56A 1DQ7A 2N66A 1T1TA 1WMTA 5FPDA 2QWNA 1PTXA 1FH3A 2YIOA 5AQJA 2ATBA 1BA1A 2GL1A 1NGGA 3D2EA 1GPTA 2JDQD 5AQOA 3FZLA 4H5VA 2LJ7A 2E0HA 1I6FA 5AQIA 5AQWA 2LN8A 4KYPA 5FPEA 3ATVA 2E88A 5AQYA 2E8AA 4H5WA 1BCGA 3LDQA 4H5TA 4HE7A 2KBJA 2KSKA 1ZYWA 1OZZA 1NGFA 1T0ZA 1AHOA 3AY9A 1JZBA 5BN8A 5F0XA 1NGAA 2B68A 2E2FA 2KYQA 3PSMA 5AQTA 1C55A 1JKZA 1K8BA 2QWMA 5EVZA 3CQXA 1NGDA 4AEIA 1P0AA 2LY5A 3LDNA 5AQGA 4AB0A 4HWIA 5CY0A 1ATRA 2N69A 2QWLA 3FZHA 3KOXA 3QI7A 5AQLA 1T7AA 4FL9A 5EX5A 2N2QA 1NGEA 1QQMA 3GDQA 3QMLA 1KAZA 2BUPA 5EXWA 1SEGA 3KP0A 3KC6A 4UAFE 1JZAA 3LDOA 2G2KA 2A7TA 5AQPA 1NRAA 3LDLA 5F1XA 2N2RA 2QWOA 1ICAA 2YILA 3FZKA 1L4VA 2ASCA 1HPMA 2SN3A 3GKUA 3LDPA 3KHWA 4KBOA 1PE4A 3L4IA 2LI7A 3JXUA 1I2UA 1QQNA 2MZ0A 4V1DC 1NE5A 1UGLA 3KOYA 4GNIA 4FSVA 5AQQA 1I2VA 1SN4A 1SN1A 2V7ZA 5F2RA 5AR0A 5BPNA 1I6GA 1B7DA 3QFPA 1SNBA 1LQQA 1KV0A 3IUCA 1ATSA 1NGCA 1VNBA 2E3FA 1KAYA 5AQNA 2KBKA 3BK3C 1ZU3A 2LJMA 2NY9X 1POIA 1T7EA 5FPNA 4UJ0A 5BPMA 1DKGD 1DJTA 4CQKA 4IO8A 5AQKA 1C56A 2VY6A 1NGIA 1MR4A 3KOZA 1TI5A 5AQMA
chains in the Genus database with same CATH topology
1B3CA 1BK8A 1ZFUA 1CN2A 1N4NA 1PX9A 2I61A 3E7UX 2BRZA 1BRZA 1ZUTA 2NY8X 1NRBA 1ZYVA 1BMRA 2M8BB 1P00A 1OMYA 2LR3A 1T7BA 2B3CA 1MYNA 1ZVEA 3E7RL 1LQHA 2YEOA 1LQIA 2YC1C 5KK4A 2E3GA 4HHFA 1AYJA 4AAZA 1WWNA 1VNAA 1CHZA 2LY6A 1WT7A 2LT8A 1NH5A 2LKBA 1NPIA 1GPSA 1ZVGA 2KGQA 2KPYA 1JXCA 2KJAA 2YBRC 2KBHA 1DQ7A 2N66A 1T1TA 1WMTA 1FH3A 1PTXA 1GPTA 2ATBA 2GL1A 2LJ7A 2E0HA 1I6FA 4KYPA 1BCGA 4HE7A 2KBJA 2KSKA 1ZYWA 1OZZA 1T0ZA 1AHOA 1JZBA 2KYQA 2B68A 3PSMA 1C55A 1JKZA 4AEIA 1P0AA 2LY5A 4AB0A 5CY0A 2N69A 1T7AA 2N2QA 1SEGA 1JZAA 2A7TA 1NRAA 2N2RA 1ICAA 1L4VA 2ASCA 2SN3A 1PE4A 2LI7A 1I2UA 2MZ0A 4V1DC 1NE5A 1I2VA 1SN4A 1SN1A 1I6GA 1B7DA 1SNBA 1LQQA 1KV0A 1VNBA 2E3FA 2KBKA 1ZU3A 2LJMA 2NY9X 1T7EA 4UJ0A 1DJTA 4CQKA 1C56A 1MR4A 1TI5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B3C A;  1BK8 A;  1ZFU A;  1CN2 A;  1N4N A;  1PX9 A;  2I61 A;  3E7U X;  2BRZ A;  1BRZ A;  1ZUT A;  2NY8 X;  1NRB A;  1ZYV A;  1BMR A;  2M8B B;  1P00 A;  1OMY A;  2LR3 A;  1T7B A;  2B3C A;  1MYN A;  1ZVE A;  3E7R L;  1LQH A;  2YEO A;  1LQI A;  2YC1 C;  5KK4 A;  2E3G A;  4HHF A;  1AYJ A;  4AAZ A;  1WWN A;  1VNA A;  1CHZ A;  2LY6 A;  1WT7 A;  2LT8 A;  1NH5 A;  2LKB A;  1NPI A;  1GPS A;  1ZVG A;  2KGQ A;  2KPY A;  1JXC A;  2KJA A;  2YBR C;  2KBH A;  1DQ7 A;  2N66 A;  1T1T A;  1WMT A;  1FH3 A;  1PTX A;  1GPT A;  2ATB A;  2GL1 A;  2LJ7 A;  2E0H A;  1I6F A;  4KYP A;  1BCG A;  4HE7 A;  2KBJ A;  2KSK A;  1ZYW A;  1OZZ A;  1T0Z A;  1AHO A;  1JZB A;  2KYQ A;  2B68 A;  3PSM A;  1C55 A;  1JKZ A;  4AEI A;  1P0A A;  2LY5 A;  4AB0 A;  5CY0 A;  2N69 A;  1T7A A;  2N2Q A;  1SEG A;  1JZA A;  2A7T A;  1NRA A;  2N2R A;  1ICA A;  1L4V A;  2ASC A;  2SN3 A;  1PE4 A;  2LI7 A;  1I2U A;  2MZ0 A;  4V1D C;  1NE5 A;  1I2V A;  1SN4 A;  1SN1 A;  1I6G A;  1B7D A;  1SNB A;  1LQQ A;  1KV0 A;  1VNB A;  2E3F A;  2KBK A;  1ZU3 A;  2LJM A;  2NY9 X;  1T7E A;  4UJ0 A;  1DJT A;  4CQK A;  1C56 A;  1MR4 A;  1TI5 A; 
#chains in the Genus database with same CATH topology
 3KVG A;  1B3C A;  1BK8 A;  1NGJ A;  5AQS A;  1ZFU A;  1CN2 A;  2MN5 A;  1N4N A;  3GL1 A;  1PX9 A;  3D2E B;  3ATU A;  1BUP A;  2GMO A;  2I61 A;  2QWR A;  1HJO A;  1QQO A;  3E7U X;  2BRZ A;  1S3X A;  3CW4 A;  1BRZ A;  2QWP A;  1ZUT A;  2NY8 X;  3SF4 D;  1NRB A;  1ZYV A;  3FZF A;  5AQH A;  2KHO A;  1XRS B;  2M8B B;  5AQU A;  1BMR A;  4UAD E;  3D2F B;  1P00 A;  4H5R A;  1OMY A;  2LR3 A;  1T7B A;  3C7N B;  5FPM A;  3QFU A;  3M3Z A;  2B3C A;  1MYN A;  1ZVE A;  3E7R L;  5AQV A;  3HSC A;  2MBK A;  1LQH A;  2YEO A;  4H5N A;  1LQI A;  5AQR A;  1NGB A;  1HX1 A;  1KAX A;  2K35 A;  2YC1 C;  4UAE F;  2QXL A;  2E3G A;  5AQZ A;  5KK4 A;  2QWQ A;  3I33 A;  1YUW A;  4HHF A;  1AYJ A;  3D2F A;  3KOW A;  3A8Y A;  4AAZ A;  1WWN A;  1VNA A;  1BA0 A;  1CHZ A;  2LY6 A;  3C7N A;  5EY4 A;  3L6Q A;  1WT7 A;  2LT8 A;  3FE1 A;  1NH5 A;  5BPL A;  2LKB A;  1NGH A;  1NPI A;  1GPS A;  1ZVG A;  5AQX A;  2YIP A;  2KGQ A;  3L56 A;  2KPY A;  5AQF A;  1JXC A;  2KJA A;  3KP1 A;  3R2V A;  5BN9 A;  3FZM A;  2YBR C;  2KBH A;  2QW9 A;  2D56 A;  1DQ7 A;  2N66 A;  1T1T A;  1WMT A;  5FPD A;  2QWN A;  1PTX A;  1FH3 A;  2YIO A;  5AQJ A;  2ATB A;  1BA1 A;  2GL1 A;  1NGG A;  3D2E A;  1GPT A;  2JDQ D;  5AQO A;  3FZL A;  4H5V A;  2LJ7 A;  2E0H A;  1I6F A;  5AQI A;  5AQW A;  2LN8 A;  4KYP A;  5FPE A;  3ATV A;  2E88 A;  5AQY A;  2E8A A;  4H5W A;  1BCG A;  3LDQ A;  4H5T A;  4HE7 A;  2KBJ A;  2KSK A;  1ZYW A;  1OZZ A;  1NGF A;  1T0Z A;  1AHO A;  3AY9 A;  1JZB A;  5BN8 A;  5F0X A;  1NGA A;  2B68 A;  2E2F A;  2KYQ A;  3PSM A;  5AQT A;  1C55 A;  1JKZ A;  1K8B A;  2QWM A;  5EVZ A;  3CQX A;  1NGD A;  4AEI A;  1P0A A;  2LY5 A;  3LDN A;  5AQG A;  4AB0 A;  4HWI A;  5CY0 A;  1ATR A;  2N69 A;  2QWL A;  3FZH A;  3KOX A;  3QI7 A;  5AQL A;  1T7A A;  4FL9 A;  5EX5 A;  2N2Q A;  1NGE A;  1QQM A;  3GDQ A;  3QML A;  1KAZ A;  2BUP A;  5EXW A;  1SEG A;  3KP0 A;  3KC6 A;  4UAF E;  1JZA A;  3LDO A;  2G2K A;  2A7T A;  5AQP A;  1NRA A;  3LDL A;  5F1X A;  2N2R A;  2QWO A;  1ICA A;  2YIL A;  3FZK A;  1L4V A;  2ASC A;  1HPM A;  2SN3 A;  3GKU A;  3LDP A;  3KHW A;  4KBO A;  1PE4 A;  3L4I A;  2LI7 A;  3JXU A;  1I2U A;  1QQN A;  2MZ0 A;  4V1D C;  1NE5 A;  1UGL A;  3KOY A;  4GNI A;  4FSV A;  5AQQ A;  1I2V A;  1SN4 A;  1SN1 A;  2V7Z A;  5F2R A;  5AR0 A;  5BPN A;  1I6G A;  1B7D A;  3QFP A;  1SNB A;  1LQQ A;  1KV0 A;  3IUC A;  1ATS A;  1NGC A;  1VNB A;  2E3F A;  1KAY A;  5AQN A;  2KBK A;  3BK3 C;  1ZU3 A;  2LJM A;  2NY9 X;  1POI A;  1T7E A;  5FPN A;  4UJ0 A;  5BPM A;  1DKG D;  1DJT A;  4CQK A;  4IO8 A;  5AQK A;  1C56 A;  2VY6 A;  1NGI A;  1MR4 A;  3KOZ A;  1TI5 A;  5AQM A; 
#chains in the Genus database with same CATH homology
 1B3C A;  1BK8 A;  1ZFU A;  1CN2 A;  1N4N A;  1PX9 A;  2I61 A;  3E7U X;  2BRZ A;  1BRZ A;  1ZUT A;  2NY8 X;  1NRB A;  1ZYV A;  1BMR A;  2M8B B;  1P00 A;  1OMY A;  2LR3 A;  1T7B A;  2B3C A;  1MYN A;  1ZVE A;  3E7R L;  1LQH A;  2YEO A;  1LQI A;  2YC1 C;  5KK4 A;  2E3G A;  4HHF A;  1AYJ A;  4AAZ A;  1WWN A;  1VNA A;  1CHZ A;  2LY6 A;  1WT7 A;  2LT8 A;  1NH5 A;  2LKB A;  1NPI A;  1GPS A;  1ZVG A;  2KGQ A;  2KPY A;  1JXC A;  2KJA A;  2YBR C;  2KBH A;  1DQ7 A;  2N66 A;  1T1T A;  1WMT A;  1FH3 A;  1PTX A;  1GPT A;  2ATB A;  2GL1 A;  2LJ7 A;  2E0H A;  1I6F A;  4KYP A;  1BCG A;  4HE7 A;  2KBJ A;  2KSK A;  1ZYW A;  1OZZ A;  1T0Z A;  1AHO A;  1JZB A;  2KYQ A;  2B68 A;  3PSM A;  1C55 A;  1JKZ A;  4AEI A;  1P0A A;  2LY5 A;  4AB0 A;  5CY0 A;  2N69 A;  1T7A A;  2N2Q A;  1SEG A;  1JZA A;  2A7T A;  1NRA A;  2N2R A;  1ICA A;  1L4V A;  2ASC A;  2SN3 A;  1PE4 A;  2LI7 A;  1I2U A;  2MZ0 A;  4V1D C;  1NE5 A;  1I2V A;  1SN4 A;  1SN1 A;  1I6G A;  1B7D A;  1SNB A;  1LQQ A;  1KV0 A;  1VNB A;  2E3F A;  2KBK A;  1ZU3 A;  2LJM A;  2NY9 X;  1T7E A;  4UJ0 A;  1DJT A;  4CQK A;  1C56 A;  1MR4 A;  1TI5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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