4CQKA

Crystal structure of ligand-bound nad1
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Phosphoinositide-Mediated Oligomerization of a Defensin Induces Cell Lysis.
pubmed doi rcsb
total genus 14
structure length 47
sequence length 47
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N
ec nomenclature
pdb deposition date 2014-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4cqkA00
1BRZA 1LQIA 2E3FA 1C55A 2E3GA 2LY6A 2A7TA 2NY9X 1NPIA 1AHOA 1NH5A 1KV0A 1ZYVA 2N66A 1N4NA 4UJ0A 1LQQA 4AAZA 2KJAA 1CHZA 1LQHA 2KPYA 4HHFA 1T1TA 1ZFUA 1ZYWA 1JXCA 1FH3A 1ZUTA 1T0ZA 1OZZA 1T7AA 1PX9A 2LKBA 2YBRC 1AYJA 1SN4A 1SEGA 1GPTA 1PE4A 2LY5A 2ASCA 2KBHA 2KSKA 1L4VA 2I61A 3E7RL 1P00A 4CQKA 2B3CA 1MR4A 1VNBA 1NRAA 2N69A 2YC1C 1I2VA 2SN3A 1GPSA 2YEOA 2LJ7A 1PTXA 2LI7A 2N2RA 3PSMA 2LJMA 2KYQA 2LT8A 2MZ0A 1WT7A 2N2QA 5KK4A 1JKZA 2BRZA 1JZAA 4AB0A 1ZU3A 1DJTA 1P0AA 1I6GA 1NRBA 1C56A 1WWNA 1T7EA 1WMTA 2KBKA 2LR3A 1B3CA 2GL1A 1VNAA 1BCGA 1SNBA 1SN1A 1BK8A 2B68A 2E0HA 1B7DA 2ATBA 2KGQA 1ZVGA 1NE5A 1ZVEA 4V1DC 1MYNA 1DQ7A 1I2UA 5CY0A 2NY8X 1BMRA 4KYPA 1TI5A 1CN2A 1ICAA 1T7BA 2KBJA 4AEIA 2M8BB 4HE7A 1JZBA 3E7UX 1I6FA 1OMYA
chains in the Genus database with same CATH superfamily
4KBOA 1BRZA 2QW9A 5FPDA 1LQIA 5AQLA 1NGBA 5EX5A 2E3FA 5AQZA 5AQQA 3KP1A 1C55A 3LDNA 4UADE 5AQGA 5FPEA 3KVGA 2E3GA 2QWMA 3D2EB 2LY6A 2GMOA 2A7TA 3AY9A 1QQMA 3GDQA 2QWPA 5AQNA 2NY9X 1NPIA 3BK3C 1AHOA 1NH5A 4H5RA 5FPMA 1DKGD 1KV0A 1NGIA 1N4NA 1NGHA 1ZYVA 2N66A 4H5TA 1LQQA 5FPNA 3KOZA 4AAZA 2KJAA 4UJ0A 1CHZA 3KHWA 2VY6A 3A8YA 2YIPA 1LQHA 2KPYA 4HHFA 5BN8A 1T1TA 1ZFUA 1ZYWA 1JXCA 1HX1A 1NGAA 1FH3A 1ZUTA 4GNIA 1T0ZA 1OZZA 3FZLA 1T7AA 4FSVA 3LDLA 1PX9A 3FZHA 2LKBA 1K8BA 3QMLA 2YBRC 3CW4A 1AYJA 2MBKA 2QXLA 1SN4A 1SEGA 2MN5A 4H5NA 5AQXA 5EY4A 1GPTA 1UGLA 5AQSA 3SF4D 1PE4A 2LY5A 2ASCA 2KBHA 5AR0A 2JDQD 2KSKA 1ATSA 3CQXA 2G2KA 1L4VA 2YILA 2I61A 5BPLA 3E7RL 1P00A 1BA0A 5AQVA 2B3CA 1MR4A 4CQKA 1VNBA 3L56A 1NRAA 1NGFA 2N69A 2YC1C 3FZFA 3KOWA 5AQTA 1I2VA 3FZKA 2SN3A 5AQUA 1GPSA 4HWIA 2YEOA 3JXUA 3KP0A 2LJ7A 3D2EA 1PTXA 1YUWA 5BPNA 2E2FA 2KHOA 2LI7A 5EVZA 4IO8A 2N2RA 5F2RA 3PSMA 3D2FB 1NGDA 5AQWA 5BPMA 4FL9A 2K35A 2LJMA 1QQOA 2QWNA 5BN9A 1XRSB 3LDPA 1HPMA 2KYQA 2LT8A 1NGGA 1KAZA 1WT7A 2MZ0A 2N2QA 5AQKA 3C7NA 5KK4A 1JKZA 3KOXA 5AQRA 2BRZA 1NGCA 3L6QA 1JZAA 3GKUA 1NGEA 2YIOA 2QWOA 5AQMA 4AB0A 1ZU3A 4UAFE 1DJTA 1P0AA 1BUPA 1POIA 1I6GA 1NRBA 1C56A 1WWNA 2E88A 1T7EA 3QFUA 3ATVA 2BUPA 1WMTA 5F1XA 2KBKA 3I33A 2LR3A 1B3CA 2GL1A 1VNAA 1BCGA 2V7ZA 3L4IA 3LDOA 1SNBA 1SN1A 5AQOA 4H5WA 2B68A 2E0HA 2QWRA 3IUCA 3KOYA 1B7DA 3R2VA 5AQJA 1BK8A 2ATBA 2E8AA 1ATRA 1KAYA 1HJOA 2KGQA 1ZVGA 1NE5A 1ZVEA 2QWLA 4UAEF 1NGJA 4V1DC 3M3ZA 1BA1A 1MYNA 1DQ7A 2D56A 5AQFA 5F0XA 1I2UA 5AQPA 3LDQA 5CY0A 2NY8X 1BMRA 4KYPA 3FZMA 3HSCA 5AQIA 2LN8A 1TI5A 3C7NB 2QWQA 1QQNA 1KAXA 1T7BA 3ATUA 1CN2A 1ICAA 2KBJA 5AQYA 4AEIA 5EXWA 3KC6A 2M8BB 5AQHA 4HE7A 3GL1A 1JZBA 4H5VA 3E7UX 1I6FA 3QFPA 3QI7A 1OMYA 3FE1A 3D2FA 1S3XA
chains in the Genus database with same CATH topology
1BRZA 1LQIA 2E3FA 1C55A 2E3GA 2LY6A 2A7TA 2NY9X 1NPIA 1AHOA 1NH5A 1KV0A 1ZYVA 2N66A 1N4NA 4UJ0A 1LQQA 4AAZA 2KJAA 1CHZA 1LQHA 2KPYA 4HHFA 1T1TA 1ZFUA 1ZYWA 1JXCA 1FH3A 1ZUTA 1T0ZA 1OZZA 1T7AA 1PX9A 2LKBA 2YBRC 1AYJA 1SN4A 1SEGA 1GPTA 1PE4A 2LY5A 2ASCA 2KBHA 2KSKA 1L4VA 2I61A 3E7RL 1P00A 4CQKA 2B3CA 1MR4A 1VNBA 1NRAA 2N69A 2YC1C 1I2VA 2SN3A 1GPSA 2YEOA 2LJ7A 1PTXA 2LI7A 2N2RA 3PSMA 2LJMA 2KYQA 2LT8A 2MZ0A 1WT7A 2N2QA 5KK4A 1JKZA 2BRZA 1JZAA 4AB0A 1ZU3A 1DJTA 1P0AA 1I6GA 1NRBA 1C56A 1WWNA 1T7EA 1WMTA 2KBKA 2LR3A 1B3CA 2GL1A 1VNAA 1BCGA 1SNBA 1SN1A 1BK8A 2B68A 2E0HA 1B7DA 2ATBA 2KGQA 1ZVGA 1NE5A 1ZVEA 4V1DC 1MYNA 1DQ7A 1I2UA 5CY0A 2NY8X 1BMRA 4KYPA 1TI5A 1CN2A 1ICAA 1T7BA 2KBJA 4AEIA 2M8BB 4HE7A 1JZBA 3E7UX 1I6FA 1OMYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BRZ A;  1LQI A;  2E3F A;  1C55 A;  2E3G A;  2LY6 A;  2A7T A;  2NY9 X;  1NPI A;  1AHO A;  1NH5 A;  1KV0 A;  1ZYV A;  2N66 A;  1N4N A;  4UJ0 A;  1LQQ A;  4AAZ A;  2KJA A;  1CHZ A;  1LQH A;  2KPY A;  4HHF A;  1T1T A;  1ZFU A;  1ZYW A;  1JXC A;  1FH3 A;  1ZUT A;  1T0Z A;  1OZZ A;  1T7A A;  1PX9 A;  2LKB A;  2YBR C;  1AYJ A;  1SN4 A;  1SEG A;  1GPT A;  1PE4 A;  2LY5 A;  2ASC A;  2KBH A;  2KSK A;  1L4V A;  2I61 A;  3E7R L;  1P00 A;  4CQK A;  2B3C A;  1MR4 A;  1VNB A;  1NRA A;  2N69 A;  2YC1 C;  1I2V A;  2SN3 A;  1GPS A;  2YEO A;  2LJ7 A;  1PTX A;  2LI7 A;  2N2R A;  3PSM A;  2LJM A;  2KYQ A;  2LT8 A;  2MZ0 A;  1WT7 A;  2N2Q A;  5KK4 A;  1JKZ A;  2BRZ A;  1JZA A;  4AB0 A;  1ZU3 A;  1DJT A;  1P0A A;  1I6G A;  1NRB A;  1C56 A;  1WWN A;  1T7E A;  1WMT A;  2KBK A;  2LR3 A;  1B3C A;  2GL1 A;  1VNA A;  1BCG A;  1SNB A;  1SN1 A;  1BK8 A;  2B68 A;  2E0H A;  1B7D A;  2ATB A;  2KGQ A;  1ZVG A;  1NE5 A;  1ZVE A;  4V1D C;  1MYN A;  1DQ7 A;  1I2U A;  5CY0 A;  2NY8 X;  1BMR A;  4KYP A;  1TI5 A;  1CN2 A;  1ICA A;  1T7B A;  2KBJ A;  4AEI A;  2M8B B;  4HE7 A;  1JZB A;  3E7U X;  1I6F A;  1OMY A; 
#chains in the Genus database with same CATH topology
 4KBO A;  1BRZ A;  2QW9 A;  5FPD A;  1LQI A;  5AQL A;  1NGB A;  5EX5 A;  2E3F A;  5AQZ A;  5AQQ A;  3KP1 A;  1C55 A;  3LDN A;  4UAD E;  5AQG A;  5FPE A;  3KVG A;  2E3G A;  2QWM A;  3D2E B;  2LY6 A;  2GMO A;  2A7T A;  3AY9 A;  1QQM A;  3GDQ A;  2QWP A;  5AQN A;  2NY9 X;  1NPI A;  3BK3 C;  1AHO A;  1NH5 A;  4H5R A;  5FPM A;  1DKG D;  1KV0 A;  1NGI A;  1N4N A;  1NGH A;  1ZYV A;  2N66 A;  4H5T A;  1LQQ A;  5FPN A;  3KOZ A;  4AAZ A;  2KJA A;  4UJ0 A;  1CHZ A;  3KHW A;  2VY6 A;  3A8Y A;  2YIP A;  1LQH A;  2KPY A;  4HHF A;  5BN8 A;  1T1T A;  1ZFU A;  1ZYW A;  1JXC A;  1HX1 A;  1NGA A;  1FH3 A;  1ZUT A;  4GNI A;  1T0Z A;  1OZZ A;  3FZL A;  1T7A A;  4FSV A;  3LDL A;  1PX9 A;  3FZH A;  2LKB A;  1K8B A;  3QML A;  2YBR C;  3CW4 A;  1AYJ A;  2MBK A;  2QXL A;  1SN4 A;  1SEG A;  2MN5 A;  4H5N A;  5AQX A;  5EY4 A;  1GPT A;  1UGL A;  5AQS A;  3SF4 D;  1PE4 A;  2LY5 A;  2ASC A;  2KBH A;  5AR0 A;  2JDQ D;  2KSK A;  1ATS A;  3CQX A;  2G2K A;  1L4V A;  2YIL A;  2I61 A;  5BPL A;  3E7R L;  1P00 A;  1BA0 A;  5AQV A;  2B3C A;  1MR4 A;  4CQK A;  1VNB A;  3L56 A;  1NRA A;  1NGF A;  2N69 A;  2YC1 C;  3FZF A;  3KOW A;  5AQT A;  1I2V A;  3FZK A;  2SN3 A;  5AQU A;  1GPS A;  4HWI A;  2YEO A;  3JXU A;  3KP0 A;  2LJ7 A;  3D2E A;  1PTX A;  1YUW A;  5BPN A;  2E2F A;  2KHO A;  2LI7 A;  5EVZ A;  4IO8 A;  2N2R A;  5F2R A;  3PSM A;  3D2F B;  1NGD A;  5AQW A;  5BPM A;  4FL9 A;  2K35 A;  2LJM A;  1QQO A;  2QWN A;  5BN9 A;  1XRS B;  3LDP A;  1HPM A;  2KYQ A;  2LT8 A;  1NGG A;  1KAZ A;  1WT7 A;  2MZ0 A;  2N2Q A;  5AQK A;  3C7N A;  5KK4 A;  1JKZ A;  3KOX A;  5AQR A;  2BRZ A;  1NGC A;  3L6Q A;  1JZA A;  3GKU A;  1NGE A;  2YIO A;  2QWO A;  5AQM A;  4AB0 A;  1ZU3 A;  4UAF E;  1DJT A;  1P0A A;  1BUP A;  1POI A;  1I6G A;  1NRB A;  1C56 A;  1WWN A;  2E88 A;  1T7E A;  3QFU A;  3ATV A;  2BUP A;  1WMT A;  5F1X A;  2KBK A;  3I33 A;  2LR3 A;  1B3C A;  2GL1 A;  1VNA A;  1BCG A;  2V7Z A;  3L4I A;  3LDO A;  1SNB A;  1SN1 A;  5AQO A;  4H5W A;  2B68 A;  2E0H A;  2QWR A;  3IUC A;  3KOY A;  1B7D A;  3R2V A;  5AQJ A;  1BK8 A;  2ATB A;  2E8A A;  1ATR A;  1KAY A;  1HJO A;  2KGQ A;  1ZVG A;  1NE5 A;  1ZVE A;  2QWL A;  4UAE F;  1NGJ A;  4V1D C;  3M3Z A;  1BA1 A;  1MYN A;  1DQ7 A;  2D56 A;  5AQF A;  5F0X A;  1I2U A;  5AQP A;  3LDQ A;  5CY0 A;  2NY8 X;  1BMR A;  4KYP A;  3FZM A;  3HSC A;  5AQI A;  2LN8 A;  1TI5 A;  3C7N B;  2QWQ A;  1QQN A;  1KAX A;  1T7B A;  3ATU A;  1CN2 A;  1ICA A;  2KBJ A;  5AQY A;  4AEI A;  5EXW A;  3KC6 A;  2M8B B;  5AQH A;  4HE7 A;  3GL1 A;  1JZB A;  4H5V A;  3E7U X;  1I6F A;  3QFP A;  3QI7 A;  1OMY A;  3FE1 A;  3D2F A;  1S3X A; 
#chains in the Genus database with same CATH homology
 1BRZ A;  1LQI A;  2E3F A;  1C55 A;  2E3G A;  2LY6 A;  2A7T A;  2NY9 X;  1NPI A;  1AHO A;  1NH5 A;  1KV0 A;  1ZYV A;  2N66 A;  1N4N A;  4UJ0 A;  1LQQ A;  4AAZ A;  2KJA A;  1CHZ A;  1LQH A;  2KPY A;  4HHF A;  1T1T A;  1ZFU A;  1ZYW A;  1JXC A;  1FH3 A;  1ZUT A;  1T0Z A;  1OZZ A;  1T7A A;  1PX9 A;  2LKB A;  2YBR C;  1AYJ A;  1SN4 A;  1SEG A;  1GPT A;  1PE4 A;  2LY5 A;  2ASC A;  2KBH A;  2KSK A;  1L4V A;  2I61 A;  3E7R L;  1P00 A;  4CQK A;  2B3C A;  1MR4 A;  1VNB A;  1NRA A;  2N69 A;  2YC1 C;  1I2V A;  2SN3 A;  1GPS A;  2YEO A;  2LJ7 A;  1PTX A;  2LI7 A;  2N2R A;  3PSM A;  2LJM A;  2KYQ A;  2LT8 A;  2MZ0 A;  1WT7 A;  2N2Q A;  5KK4 A;  1JKZ A;  2BRZ A;  1JZA A;  4AB0 A;  1ZU3 A;  1DJT A;  1P0A A;  1I6G A;  1NRB A;  1C56 A;  1WWN A;  1T7E A;  1WMT A;  2KBK A;  2LR3 A;  1B3C A;  2GL1 A;  1VNA A;  1BCG A;  1SNB A;  1SN1 A;  1BK8 A;  2B68 A;  2E0H A;  1B7D A;  2ATB A;  2KGQ A;  1ZVG A;  1NE5 A;  1ZVE A;  4V1D C;  1MYN A;  1DQ7 A;  1I2U A;  5CY0 A;  2NY8 X;  1BMR A;  4KYP A;  1TI5 A;  1CN2 A;  1ICA A;  1T7B A;  2KBJ A;  4AEI A;  2M8B B;  4HE7 A;  1JZB A;  3E7U X;  1I6F A;  1OMY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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