1T7BA

Crystal structure of mutant lys8gln of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
66
structure length
66
Chain Sequence
NSVRDAYIAQPHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIRVPGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Alpha-like neurotoxin BmK-I
publication title Structural Mechanism Governing Cis and Trans Isomeric States and an Intramolecular Switch for Cis/Trans Isomerization of a Non-proline Peptide Bond Observed in Crystal Structures of Scorpion Toxins
pubmed doi rcsb
source organism Mesobuthus martensii
total genus 16
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2004-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1t7bA00
2NY8X 2KSKA 1ZVEA 1MYNA 1VNAA 1PTXA 1GPSA 1T7EA 5CY0A 1WWNA 1DJTA 1GPTA 1CN2A 1ZYWA 1JKZA 2LI7A 1FH3A 2LY6A 2YC1C 3E7RL 2LY5A 1OMYA 1LQHA 1NE5A 4KYPA 4HHFA 4CQKA 1ICAA 1DQ7A 2ASCA 1I2VA 5KK4A 1T1TA 1P0AA 2E3FA 1SNBA 1CHZA 1KV0A 1ZYVA 2N66A 4HE7A 1BK8A 2A7TA 2SN3A 2YEOA 2LR3A 4AEIA 1NPIA 1SEGA 2KBJA 4AAZA 1VNBA 4V1DC 1PE4A 1OZZA 1LQIA 1TI5A 1T7AA 2LKBA 2E0HA 1PX9A 1C55A 2LJMA 2YBRC 4UJ0A 1B7DA 1JZBA 1T7BA 1WMTA 2LJ7A 2B3CA 2KJAA 1N4NA 2KBKA 2N69A 2I61A 1C56A 1JZAA 4AB0A 2NY9X 1L4VA 1BRZA 1ZUTA 1SN1A 1SN4A 2KPYA 1BCGA 1NRAA 2GL1A 1T0ZA 3E7UX 2B68A 2ATBA 1MR4A 1NRBA 1I2UA 1ZU3A 1BMRA 2KBHA 2KYQA 1JXCA 1AHOA 1WT7A 2M8BB 2N2QA 3PSMA 1AYJA 2LT8A 1I6FA 2E3GA 2MZ0A 1B3CA 1NH5A 1ZFUA 1P00A 2KGQA 2N2RA 1I6GA 1LQQA 1ZVGA 2BRZA
chains in the Genus database with same CATH superfamily
2NY8X 3D2FB 3CW4A 2KSKA 1ZVEA 3A8YA 5AQFA 1MYNA 1QQNA 3AY9A 1VNAA 4UAEF 3LDNA 5AQGA 1BUPA 3KHWA 2MBKA 5BPLA 3LDQA 3D2FA 1POIA 1PTXA 1UGLA 4UADE 1XRSB 3R2VA 5BN9A 1GPSA 2YIPA 2QWPA 1K8BA 1T7EA 4IO8A 3QI7A 3ATVA 5CY0A 1S3XA 1WWNA 1DJTA 1KAXA 1GPTA 1NGAA 2E2FA 3FZHA 1HJOA 5AQQA 1CN2A 1ZYWA 5FPNA 1JKZA 5BN8A 5AQLA 2LI7A 3KOWA 1KAZA 1NGCA 2LY6A 5AQPA 3KOZA 5F0XA 1NGEA 1FH3A 4H5NA 1DKGD 2YC1C 3E7RL 2LY5A 1NGIA 2V7ZA 3FE1A 3C7NA 2QWOA 1OMYA 4FL9A 1LQHA 1ATSA 1NE5A 2KHOA 4KYPA 4HHFA 1YUWA 5AQSA 1QQMA 1NGHA 4CQKA 1DQ7A 2ASCA 1ICAA 1I2VA 5KK4A 3FZKA 3FZFA 1T1TA 1P0AA 2E3FA 1SNBA 1CHZA 1KV0A 1ZYVA 2N66A 2QWRA 3JXUA 4FSVA 2A7TA 4HE7A 5AQMA 2SN3A 5EXWA 1BK8A 2QWMA 4H5RA 2YEOA 2LR3A 3KVGA 3BK3C 3I33A 3ATUA 5AQWA 5BPNA 5F1XA 5F2RA 2QWQA 2GMOA 4UAFE 1NGDA 4AEIA 5AQIA 1NPIA 5EX5A 2G2KA 1SEGA 2KBJA 3L6QA 5AQJA 4AAZA 1VNBA 3GKUA 3L4IA 3QFPA 1QQOA 4V1DC 1ATRA 1PE4A 1OZZA 3CQXA 1LQIA 1TI5A 3GDQA 5AQNA 5AQXA 1T7AA 3KP1A 3QFUA 2MN5A 2LKBA 2YILA 2E0HA 3IUCA 1PX9A 5EVZA 5AQOA 4H5TA 2LJMA 1C55A 4GNIA 1NGBA 2YBRC 4UJ0A 1B7DA 1JZBA 1KAYA 4H5VA 5AQTA 1T7BA 2JDQD 5FPEA 1WMTA 4KBOA 2LJ7A 5AQKA 4HWIA 2B3CA 2YIOA 3L56A 2KJAA 1N4NA 2KBKA 3FZMA 2N69A 2VY6A 3KC6A 2E88A 2I61A 3M3ZA 1C56A 1JZAA 4H5WA 5AQRA 5AQUA 2D56A 1NGJA 4AB0A 2NY9X 1L4VA 1BRZA 2QW9A 1ZUTA 2E8AA 1SN1A 1SN4A 1NGFA 3HSCA 5AQHA 5EY4A 3LDLA 2KPYA 2QWNA 1BCGA 1NRAA 2GL1A 1NGGA 1T0ZA 1BA1A 3E7UX 3LDPA 2B68A 2QXLA 2ATBA 1MR4A 5AQYA 1NRBA 2QWLA 1AYJA 1I2UA 3KOYA 3GL1A 1ZU3A 2LN8A 3D2EB 1BMRA 2KBHA 3LDOA 2KYQA 3QMLA 1JXCA 1AHOA 1WT7A 2M8BB 5FPMA 1BA0A 2N2QA 3PSMA 2K35A 2BUPA 5AQZA 2LT8A 1I6FA 2E3GA 1HX1A 2MZ0A 3C7NB 3KP0A 3FZLA 3KOXA 1B3CA 1NH5A 3D2EA 1ZFUA 1P00A 2KGQA 3SF4D 2N2RA 5BPMA 5AR0A 1HPMA 1I6GA 1LQQA 5FPDA 1ZVGA 5AQVA 2BRZA
chains in the Genus database with same CATH topology
2NY8X 2KSKA 1ZVEA 1MYNA 1VNAA 1PTXA 1GPSA 1T7EA 5CY0A 1WWNA 1DJTA 1GPTA 1CN2A 1ZYWA 1JKZA 2LI7A 1FH3A 2LY6A 2YC1C 3E7RL 2LY5A 1OMYA 1LQHA 1NE5A 4KYPA 4HHFA 4CQKA 1ICAA 1DQ7A 2ASCA 1I2VA 5KK4A 1T1TA 1P0AA 2E3FA 1SNBA 1CHZA 1KV0A 1ZYVA 2N66A 4HE7A 1BK8A 2A7TA 2SN3A 2YEOA 2LR3A 4AEIA 1NPIA 1SEGA 2KBJA 4AAZA 1VNBA 4V1DC 1PE4A 1OZZA 1LQIA 1TI5A 1T7AA 2LKBA 2E0HA 1PX9A 1C55A 2LJMA 2YBRC 4UJ0A 1B7DA 1JZBA 1T7BA 1WMTA 2LJ7A 2B3CA 2KJAA 1N4NA 2KBKA 2N69A 2I61A 1C56A 1JZAA 4AB0A 2NY9X 1L4VA 1BRZA 1ZUTA 1SN1A 1SN4A 2KPYA 1BCGA 1NRAA 2GL1A 1T0ZA 3E7UX 2B68A 2ATBA 1MR4A 1NRBA 1I2UA 1ZU3A 1BMRA 2KBHA 2KYQA 1JXCA 1AHOA 1WT7A 2M8BB 2N2QA 3PSMA 1AYJA 2LT8A 1I6FA 2E3GA 2MZ0A 1B3CA 1NH5A 1ZFUA 1P00A 2KGQA 2N2RA 1I6GA 1LQQA 1ZVGA 2BRZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NY8 X;  2KSK A;  1ZVE A;  1MYN A;  1VNA A;  1PTX A;  1GPS A;  1T7E A;  5CY0 A;  1WWN A;  1DJT A;  1GPT A;  1CN2 A;  1ZYW A;  1JKZ A;  2LI7 A;  1FH3 A;  2LY6 A;  2YC1 C;  3E7R L;  2LY5 A;  1OMY A;  1LQH A;  1NE5 A;  4KYP A;  4HHF A;  4CQK A;  1ICA A;  1DQ7 A;  2ASC A;  1I2V A;  5KK4 A;  1T1T A;  1P0A A;  2E3F A;  1SNB A;  1CHZ A;  1KV0 A;  1ZYV A;  2N66 A;  4HE7 A;  1BK8 A;  2A7T A;  2SN3 A;  2YEO A;  2LR3 A;  4AEI A;  1NPI A;  1SEG A;  2KBJ A;  4AAZ A;  1VNB A;  4V1D C;  1PE4 A;  1OZZ A;  1LQI A;  1TI5 A;  1T7A A;  2LKB A;  2E0H A;  1PX9 A;  1C55 A;  2LJM A;  2YBR C;  4UJ0 A;  1B7D A;  1JZB A;  1T7B A;  1WMT A;  2LJ7 A;  2B3C A;  2KJA A;  1N4N A;  2KBK A;  2N69 A;  2I61 A;  1C56 A;  1JZA A;  4AB0 A;  2NY9 X;  1L4V A;  1BRZ A;  1ZUT A;  1SN1 A;  1SN4 A;  2KPY A;  1BCG A;  1NRA A;  2GL1 A;  1T0Z A;  3E7U X;  2B68 A;  2ATB A;  1MR4 A;  1NRB A;  1I2U A;  1ZU3 A;  1BMR A;  2KBH A;  2KYQ A;  1JXC A;  1AHO A;  1WT7 A;  2M8B B;  2N2Q A;  3PSM A;  1AYJ A;  2LT8 A;  1I6F A;  2E3G A;  2MZ0 A;  1B3C A;  1NH5 A;  1ZFU A;  1P00 A;  2KGQ A;  2N2R A;  1I6G A;  1LQQ A;  1ZVG A;  2BRZ A; 
#chains in the Genus database with same CATH topology
 2NY8 X;  3D2F B;  3CW4 A;  2KSK A;  1ZVE A;  3A8Y A;  5AQF A;  1MYN A;  1QQN A;  3AY9 A;  1VNA A;  4UAE F;  3LDN A;  5AQG A;  1BUP A;  3KHW A;  2MBK A;  5BPL A;  3LDQ A;  3D2F A;  1POI A;  1PTX A;  1UGL A;  4UAD E;  1XRS B;  3R2V A;  5BN9 A;  1GPS A;  2YIP A;  2QWP A;  1K8B A;  1T7E A;  4IO8 A;  3QI7 A;  3ATV A;  5CY0 A;  1S3X A;  1WWN A;  1DJT A;  1KAX A;  1GPT A;  1NGA A;  2E2F A;  3FZH A;  1HJO A;  5AQQ A;  1CN2 A;  1ZYW A;  5FPN A;  1JKZ A;  5BN8 A;  5AQL A;  2LI7 A;  3KOW A;  1KAZ A;  1NGC A;  2LY6 A;  5AQP A;  3KOZ A;  5F0X A;  1NGE A;  1FH3 A;  4H5N A;  1DKG D;  2YC1 C;  3E7R L;  2LY5 A;  1NGI A;  2V7Z A;  3FE1 A;  3C7N A;  2QWO A;  1OMY A;  4FL9 A;  1LQH A;  1ATS A;  1NE5 A;  2KHO A;  4KYP A;  4HHF A;  1YUW A;  5AQS A;  1QQM A;  1NGH A;  4CQK A;  1DQ7 A;  2ASC A;  1ICA A;  1I2V A;  5KK4 A;  3FZK A;  3FZF A;  1T1T A;  1P0A A;  2E3F A;  1SNB A;  1CHZ A;  1KV0 A;  1ZYV A;  2N66 A;  2QWR A;  3JXU A;  4FSV A;  2A7T A;  4HE7 A;  5AQM A;  2SN3 A;  5EXW A;  1BK8 A;  2QWM A;  4H5R A;  2YEO A;  2LR3 A;  3KVG A;  3BK3 C;  3I33 A;  3ATU A;  5AQW A;  5BPN A;  5F1X A;  5F2R A;  2QWQ A;  2GMO A;  4UAF E;  1NGD A;  4AEI A;  5AQI A;  1NPI A;  5EX5 A;  2G2K A;  1SEG A;  2KBJ A;  3L6Q A;  5AQJ A;  4AAZ A;  1VNB A;  3GKU A;  3L4I A;  3QFP A;  1QQO A;  4V1D C;  1ATR A;  1PE4 A;  1OZZ A;  3CQX A;  1LQI A;  1TI5 A;  3GDQ A;  5AQN A;  5AQX A;  1T7A A;  3KP1 A;  3QFU A;  2MN5 A;  2LKB A;  2YIL A;  2E0H A;  3IUC A;  1PX9 A;  5EVZ A;  5AQO A;  4H5T A;  2LJM A;  1C55 A;  4GNI A;  1NGB A;  2YBR C;  4UJ0 A;  1B7D A;  1JZB A;  1KAY A;  4H5V A;  5AQT A;  1T7B A;  2JDQ D;  5FPE A;  1WMT A;  4KBO A;  2LJ7 A;  5AQK A;  4HWI A;  2B3C A;  2YIO A;  3L56 A;  2KJA A;  1N4N A;  2KBK A;  3FZM A;  2N69 A;  2VY6 A;  3KC6 A;  2E88 A;  2I61 A;  3M3Z A;  1C56 A;  1JZA A;  4H5W A;  5AQR A;  5AQU A;  2D56 A;  1NGJ A;  4AB0 A;  2NY9 X;  1L4V A;  1BRZ A;  2QW9 A;  1ZUT A;  2E8A A;  1SN1 A;  1SN4 A;  1NGF A;  3HSC A;  5AQH A;  5EY4 A;  3LDL A;  2KPY A;  2QWN A;  1BCG A;  1NRA A;  2GL1 A;  1NGG A;  1T0Z A;  1BA1 A;  3E7U X;  3LDP A;  2B68 A;  2QXL A;  2ATB A;  1MR4 A;  5AQY A;  1NRB A;  2QWL A;  1AYJ A;  1I2U A;  3KOY A;  3GL1 A;  1ZU3 A;  2LN8 A;  3D2E B;  1BMR A;  2KBH A;  3LDO A;  2KYQ A;  3QML A;  1JXC A;  1AHO A;  1WT7 A;  2M8B B;  5FPM A;  1BA0 A;  2N2Q A;  3PSM A;  2K35 A;  2BUP A;  5AQZ A;  2LT8 A;  1I6F A;  2E3G A;  1HX1 A;  2MZ0 A;  3C7N B;  3KP0 A;  3FZL A;  3KOX A;  1B3C A;  1NH5 A;  3D2E A;  1ZFU A;  1P00 A;  2KGQ A;  3SF4 D;  2N2R A;  5BPM A;  5AR0 A;  1HPM A;  1I6G A;  1LQQ A;  5FPD A;  1ZVG A;  5AQV A;  2BRZ A; 
#chains in the Genus database with same CATH homology
 2NY8 X;  2KSK A;  1ZVE A;  1MYN A;  1VNA A;  1PTX A;  1GPS A;  1T7E A;  5CY0 A;  1WWN A;  1DJT A;  1GPT A;  1CN2 A;  1ZYW A;  1JKZ A;  2LI7 A;  1FH3 A;  2LY6 A;  2YC1 C;  3E7R L;  2LY5 A;  1OMY A;  1LQH A;  1NE5 A;  4KYP A;  4HHF A;  4CQK A;  1ICA A;  1DQ7 A;  2ASC A;  1I2V A;  5KK4 A;  1T1T A;  1P0A A;  2E3F A;  1SNB A;  1CHZ A;  1KV0 A;  1ZYV A;  2N66 A;  4HE7 A;  1BK8 A;  2A7T A;  2SN3 A;  2YEO A;  2LR3 A;  4AEI A;  1NPI A;  1SEG A;  2KBJ A;  4AAZ A;  1VNB A;  4V1D C;  1PE4 A;  1OZZ A;  1LQI A;  1TI5 A;  1T7A A;  2LKB A;  2E0H A;  1PX9 A;  1C55 A;  2LJM A;  2YBR C;  4UJ0 A;  1B7D A;  1JZB A;  1T7B A;  1WMT A;  2LJ7 A;  2B3C A;  2KJA A;  1N4N A;  2KBK A;  2N69 A;  2I61 A;  1C56 A;  1JZA A;  4AB0 A;  2NY9 X;  1L4V A;  1BRZ A;  1ZUT A;  1SN1 A;  1SN4 A;  2KPY A;  1BCG A;  1NRA A;  2GL1 A;  1T0Z A;  3E7U X;  2B68 A;  2ATB A;  1MR4 A;  1NRB A;  1I2U A;  1ZU3 A;  1BMR A;  2KBH A;  2KYQ A;  1JXC A;  1AHO A;  1WT7 A;  2M8B B;  2N2Q A;  3PSM A;  1AYJ A;  2LT8 A;  1I6F A;  2E3G A;  2MZ0 A;  1B3C A;  1NH5 A;  1ZFU A;  1P00 A;  2KGQ A;  2N2R A;  1I6G A;  1LQQ A;  1ZVG A;  2BRZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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