1SEGA

Crystal structure of a toxin chimera between lqh-alpha-it from the scorpion leiurus quinquestriatus hebraeus and aah2 from androctonus australis hector
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
64
structure length
64
Chain Sequence
VKDGYIVKNYNCTYFCFRNAYCNEECTKLKGESGYCQWASPYGNACYCYKLPDHVPIRVPGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords AAH2: LQH-ALPHA-IT (FACE) CHIMERIC TOXIN
publication title Molecular basis of the high insecticidal potency of scorpion alpha-toxins.
pubmed doi rcsb
source organism Androctonus australis hector
total genus 17
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2004-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1segA00
1VNBA 2M8BB 1BCGA 2B68A 1ZVEA 2NY8X 1JZAA 1I6GA 2LY6A 4V1DC 1NE5A 1ZYWA 2LT8A 5KK4A 1NH5A 4HHFA 1KV0A 1SN1A 1WT7A 1T1TA 4KYPA 5CY0A 1LQHA 4UJ0A 1PE4A 1BK8A 1NRBA 2I61A 4AB0A 1NRAA 1MYNA 1T7EA 1ZU3A 2YEOA 2KYQA 2N66A 1JKZA 1AYJA 1DJTA 4AAZA 2LJMA 2E0HA 2E3FA 2N2RA 2LR3A 1ZUTA 2KJAA 2LKBA 1GPSA 1JXCA 1CN2A 1CHZA 2GL1A 2YC1C 1GPTA 1ZFUA 1N4NA 1BRZA 1BMRA 1WMTA 1L4VA 2N69A 4AEIA 2ASCA 2LJ7A 1VNAA 1I6FA 3E7UX 2YBRC 1T7AA 4CQKA 2A7TA 1ZYVA 1C56A 1PX9A 2KGQA 1P00A 1P0AA 3PSMA 1ICAA 1AHOA 2B3CA 2NY9X 2E3GA 3E7RL 2LI7A 2BRZA 1OZZA 1NPIA 2KBJA 2KBKA 2KBHA 1DQ7A 1TI5A 2N2QA 1SNBA 1WWNA 1C55A 4HE7A 2MZ0A 2ATBA 2KPYA 2LY5A 2KSKA 1SEGA 1I2UA 1LQQA 2SN3A 1B3CA 1JZBA 1T0ZA 1SN4A 1OMYA 1ZVGA 1B7DA 1MR4A 1LQIA 1T7BA 1PTXA 1I2VA 1FH3A
chains in the Genus database with same CATH superfamily
3QI7A 1VNBA 2M8BB 2QW9A 3AY9A 1BCGA 3KOZA 3D2FB 2B68A 1ZVEA 2NY8X 1JZAA 1NGGA 2D56A 1QQOA 1I6GA 1NGIA 4FL9A 2LY6A 4UAFE 3GL1A 5AQUA 2QXLA 2E2FA 1NE5A 3A8YA 4V1DC 1ZYWA 3KOYA 2K35A 2LT8A 1BUPA 5KK4A 1NH5A 1NGBA 5AQZA 4HHFA 3C7NB 1KAXA 2QWNA 3L4IA 1KV0A 1SN1A 1WT7A 1T1TA 3JXUA 4KYPA 5AQIA 2YILA 3GDQA 5EXWA 3L56A 5CY0A 1LQHA 3L6QA 4UJ0A 5AR0A 3LDPA 5EVZA 3D2FA 3CQXA 1PE4A 1BK8A 1NRBA 2I61A 2QWOA 4HWIA 5FPDA 2QWRA 3R2VA 4FSVA 4AB0A 1NRAA 5AQSA 1MYNA 3KOWA 2QWLA 1T7EA 1ZU3A 2QWQA 2YEOA 3FZKA 2KYQA 3FZFA 2N66A 3LDOA 1AYJA 1JKZA 1DJTA 4AAZA 2LJMA 5BN8A 5AQFA 2E0HA 2E3FA 1HPMA 3KP0A 3C7NA 2N2RA 2JDQD 5AQLA 2BUPA 2QWPA 4H5WA 2GMOA 1QQMA 2LR3A 1ZUTA 2KJAA 5AQJA 2LKBA 1GPSA 1NGAA 4H5VA 1JXCA 1CN2A 1CHZA 1NGEA 2GL1A 2YC1C 3KOXA 1GPTA 1HX1A 5AQWA 2YIOA 3D2EB 1ZFUA 1N4NA 3LDNA 1BRZA 2MN5A 5EX5A 2KHOA 1WMTA 1BMRA 1L4VA 1UGLA 2N69A 5FPNA 4UADE 5AQGA 4AEIA 4GNIA 2G2KA 5AQHA 1HJOA 3KP1A 2ASCA 1FH3A 2LJ7A 1VNAA 1I6FA 3E7UX 3LDQA 1ATSA 2YBRC 3KVGA 4H5RA 4IO8A 1T7AA 2E88A 1ATRA 4CQKA 1XRSB 2A7TA 1S3XA 5FPEA 1ZYVA 1BA0A 3FE1A 2VY6A 5AQOA 5BPLA 5AQNA 1C56A 1PX9A 1P00A 1P0AA 2KGQA 3PSMA 5FPMA 1AHOA 2B3CA 2NY9X 3QFPA 3D2EA 3CW4A 5BN9A 3ATUA 2E3GA 3E7RL 3SF4D 3HSCA 5F2RA 2LI7A 5AQQA 2BRZA 1OZZA 5AQPA 1NPIA 3ATVA 2KBJA 2QWMA 2KBKA 2KBHA 3KC6A 1DKGD 1DQ7A 1TI5A 2N2QA 3QMLA 1BA1A 4UAEF 1NGHA 1SNBA 1WWNA 2YIPA 4HE7A 1C55A 5F1XA 2MZ0A 2ATBA 1NGJA 2MBKA 5AQVA 2KPYA 4H5TA 2LY5A 2E8AA 3BK3C 3FZHA 3FZLA 2KSKA 1SEGA 4H5NA 1KAYA 3IUCA 5BPMA 1I2UA 1POIA 3KHWA 1LQQA 5AQRA 2SN3A 1YUWA 5AQMA 1ICAA 1B3CA 3LDLA 1NGFA 3I33A 3QFUA 5AQTA 1JZBA 1T0ZA 1QQNA 1SN4A 2V7ZA 3GKUA 1KAZA 5F0XA 1K8BA 1NGDA 4KBOA 5BPNA 1OMYA 5AQKA 1ZVGA 1B7DA 1MR4A 1LQIA 2LN8A 3M3ZA 1NGCA 3FZMA 5AQYA 1T7BA 1PTXA 1I2VA 5EY4A 5AQXA
chains in the Genus database with same CATH topology
1VNBA 2M8BB 1BCGA 2B68A 1ZVEA 2NY8X 1JZAA 1I6GA 2LY6A 4V1DC 1NE5A 1ZYWA 2LT8A 5KK4A 1NH5A 4HHFA 1KV0A 1SN1A 1WT7A 1T1TA 4KYPA 5CY0A 1LQHA 4UJ0A 1PE4A 1BK8A 1NRBA 2I61A 4AB0A 1NRAA 1MYNA 1T7EA 1ZU3A 2YEOA 2KYQA 2N66A 1JKZA 1AYJA 1DJTA 4AAZA 2LJMA 2E0HA 2E3FA 2N2RA 2LR3A 1ZUTA 2KJAA 2LKBA 1GPSA 1JXCA 1CN2A 1CHZA 2GL1A 2YC1C 1GPTA 1ZFUA 1N4NA 1BRZA 1BMRA 1WMTA 1L4VA 2N69A 4AEIA 2ASCA 2LJ7A 1VNAA 1I6FA 3E7UX 2YBRC 1T7AA 4CQKA 2A7TA 1ZYVA 1C56A 1PX9A 2KGQA 1P00A 1P0AA 3PSMA 1ICAA 1AHOA 2B3CA 2NY9X 2E3GA 3E7RL 2LI7A 2BRZA 1OZZA 1NPIA 2KBJA 2KBKA 2KBHA 1DQ7A 1TI5A 2N2QA 1SNBA 1WWNA 1C55A 4HE7A 2MZ0A 2ATBA 2KPYA 2LY5A 2KSKA 1SEGA 1I2UA 1LQQA 2SN3A 1B3CA 1JZBA 1T0ZA 1SN4A 1OMYA 1ZVGA 1B7DA 1MR4A 1LQIA 1T7BA 1PTXA 1I2VA 1FH3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VNB A;  2M8B B;  1BCG A;  2B68 A;  1ZVE A;  2NY8 X;  1JZA A;  1I6G A;  2LY6 A;  4V1D C;  1NE5 A;  1ZYW A;  2LT8 A;  5KK4 A;  1NH5 A;  4HHF A;  1KV0 A;  1SN1 A;  1WT7 A;  1T1T A;  4KYP A;  5CY0 A;  1LQH A;  4UJ0 A;  1PE4 A;  1BK8 A;  1NRB A;  2I61 A;  4AB0 A;  1NRA A;  1MYN A;  1T7E A;  1ZU3 A;  2YEO A;  2KYQ A;  2N66 A;  1JKZ A;  1AYJ A;  1DJT A;  4AAZ A;  2LJM A;  2E0H A;  2E3F A;  2N2R A;  2LR3 A;  1ZUT A;  2KJA A;  2LKB A;  1GPS A;  1JXC A;  1CN2 A;  1CHZ A;  2GL1 A;  2YC1 C;  1GPT A;  1ZFU A;  1N4N A;  1BRZ A;  1BMR A;  1WMT A;  1L4V A;  2N69 A;  4AEI A;  2ASC A;  2LJ7 A;  1VNA A;  1I6F A;  3E7U X;  2YBR C;  1T7A A;  4CQK A;  2A7T A;  1ZYV A;  1C56 A;  1PX9 A;  2KGQ A;  1P00 A;  1P0A A;  3PSM A;  1ICA A;  1AHO A;  2B3C A;  2NY9 X;  2E3G A;  3E7R L;  2LI7 A;  2BRZ A;  1OZZ A;  1NPI A;  2KBJ A;  2KBK A;  2KBH A;  1DQ7 A;  1TI5 A;  2N2Q A;  1SNB A;  1WWN A;  1C55 A;  4HE7 A;  2MZ0 A;  2ATB A;  2KPY A;  2LY5 A;  2KSK A;  1SEG A;  1I2U A;  1LQQ A;  2SN3 A;  1B3C A;  1JZB A;  1T0Z A;  1SN4 A;  1OMY A;  1ZVG A;  1B7D A;  1MR4 A;  1LQI A;  1T7B A;  1PTX A;  1I2V A;  1FH3 A; 
#chains in the Genus database with same CATH topology
 3QI7 A;  1VNB A;  2M8B B;  2QW9 A;  3AY9 A;  1BCG A;  3KOZ A;  3D2F B;  2B68 A;  1ZVE A;  2NY8 X;  1JZA A;  1NGG A;  2D56 A;  1QQO A;  1I6G A;  1NGI A;  4FL9 A;  2LY6 A;  4UAF E;  3GL1 A;  5AQU A;  2QXL A;  2E2F A;  1NE5 A;  3A8Y A;  4V1D C;  1ZYW A;  3KOY A;  2K35 A;  2LT8 A;  1BUP A;  5KK4 A;  1NH5 A;  1NGB A;  5AQZ A;  4HHF A;  3C7N B;  1KAX A;  2QWN A;  3L4I A;  1KV0 A;  1SN1 A;  1WT7 A;  1T1T A;  3JXU A;  4KYP A;  5AQI A;  2YIL A;  3GDQ A;  5EXW A;  3L56 A;  5CY0 A;  1LQH A;  3L6Q A;  4UJ0 A;  5AR0 A;  3LDP A;  5EVZ A;  3D2F A;  3CQX A;  1PE4 A;  1BK8 A;  1NRB A;  2I61 A;  2QWO A;  4HWI A;  5FPD A;  2QWR A;  3R2V A;  4FSV A;  4AB0 A;  1NRA A;  5AQS A;  1MYN A;  3KOW A;  2QWL A;  1T7E A;  1ZU3 A;  2QWQ A;  2YEO A;  3FZK A;  2KYQ A;  3FZF A;  2N66 A;  3LDO A;  1AYJ A;  1JKZ A;  1DJT A;  4AAZ A;  2LJM A;  5BN8 A;  5AQF A;  2E0H A;  2E3F A;  1HPM A;  3KP0 A;  3C7N A;  2N2R A;  2JDQ D;  5AQL A;  2BUP A;  2QWP A;  4H5W A;  2GMO A;  1QQM A;  2LR3 A;  1ZUT A;  2KJA A;  5AQJ A;  2LKB A;  1GPS A;  1NGA A;  4H5V A;  1JXC A;  1CN2 A;  1CHZ A;  1NGE A;  2GL1 A;  2YC1 C;  3KOX A;  1GPT A;  1HX1 A;  5AQW A;  2YIO A;  3D2E B;  1ZFU A;  1N4N A;  3LDN A;  1BRZ A;  2MN5 A;  5EX5 A;  2KHO A;  1WMT A;  1BMR A;  1L4V A;  1UGL A;  2N69 A;  5FPN A;  4UAD E;  5AQG A;  4AEI A;  4GNI A;  2G2K A;  5AQH A;  1HJO A;  3KP1 A;  2ASC A;  1FH3 A;  2LJ7 A;  1VNA A;  1I6F A;  3E7U X;  3LDQ A;  1ATS A;  2YBR C;  3KVG A;  4H5R A;  4IO8 A;  1T7A A;  2E88 A;  1ATR A;  4CQK A;  1XRS B;  2A7T A;  1S3X A;  5FPE A;  1ZYV A;  1BA0 A;  3FE1 A;  2VY6 A;  5AQO A;  5BPL A;  5AQN A;  1C56 A;  1PX9 A;  1P00 A;  1P0A A;  2KGQ A;  3PSM A;  5FPM A;  1AHO A;  2B3C A;  2NY9 X;  3QFP A;  3D2E A;  3CW4 A;  5BN9 A;  3ATU A;  2E3G A;  3E7R L;  3SF4 D;  3HSC A;  5F2R A;  2LI7 A;  5AQQ A;  2BRZ A;  1OZZ A;  5AQP A;  1NPI A;  3ATV A;  2KBJ A;  2QWM A;  2KBK A;  2KBH A;  3KC6 A;  1DKG D;  1DQ7 A;  1TI5 A;  2N2Q A;  3QML A;  1BA1 A;  4UAE F;  1NGH A;  1SNB A;  1WWN A;  2YIP A;  4HE7 A;  1C55 A;  5F1X A;  2MZ0 A;  2ATB A;  1NGJ A;  2MBK A;  5AQV A;  2KPY A;  4H5T A;  2LY5 A;  2E8A A;  3BK3 C;  3FZH A;  3FZL A;  2KSK A;  1SEG A;  4H5N A;  1KAY A;  3IUC A;  5BPM A;  1I2U A;  1POI A;  3KHW A;  1LQQ A;  5AQR A;  2SN3 A;  1YUW A;  5AQM A;  1ICA A;  1B3C A;  3LDL A;  1NGF A;  3I33 A;  3QFU A;  5AQT A;  1JZB A;  1T0Z A;  1QQN A;  1SN4 A;  2V7Z A;  3GKU A;  1KAZ A;  5F0X A;  1K8B A;  1NGD A;  4KBO A;  5BPN A;  1OMY A;  5AQK A;  1ZVG A;  1B7D A;  1MR4 A;  1LQI A;  2LN8 A;  3M3Z A;  1NGC A;  3FZM A;  5AQY A;  1T7B A;  1PTX A;  1I2V A;  5EY4 A;  5AQX A; 
#chains in the Genus database with same CATH homology
 1VNB A;  2M8B B;  1BCG A;  2B68 A;  1ZVE A;  2NY8 X;  1JZA A;  1I6G A;  2LY6 A;  4V1D C;  1NE5 A;  1ZYW A;  2LT8 A;  5KK4 A;  1NH5 A;  4HHF A;  1KV0 A;  1SN1 A;  1WT7 A;  1T1T A;  4KYP A;  5CY0 A;  1LQH A;  4UJ0 A;  1PE4 A;  1BK8 A;  1NRB A;  2I61 A;  4AB0 A;  1NRA A;  1MYN A;  1T7E A;  1ZU3 A;  2YEO A;  2KYQ A;  2N66 A;  1JKZ A;  1AYJ A;  1DJT A;  4AAZ A;  2LJM A;  2E0H A;  2E3F A;  2N2R A;  2LR3 A;  1ZUT A;  2KJA A;  2LKB A;  1GPS A;  1JXC A;  1CN2 A;  1CHZ A;  2GL1 A;  2YC1 C;  1GPT A;  1ZFU A;  1N4N A;  1BRZ A;  1BMR A;  1WMT A;  1L4V A;  2N69 A;  4AEI A;  2ASC A;  2LJ7 A;  1VNA A;  1I6F A;  3E7U X;  2YBR C;  1T7A A;  4CQK A;  2A7T A;  1ZYV A;  1C56 A;  1PX9 A;  2KGQ A;  1P00 A;  1P0A A;  3PSM A;  1ICA A;  1AHO A;  2B3C A;  2NY9 X;  2E3G A;  3E7R L;  2LI7 A;  2BRZ A;  1OZZ A;  1NPI A;  2KBJ A;  2KBK A;  2KBH A;  1DQ7 A;  1TI5 A;  2N2Q A;  1SNB A;  1WWN A;  1C55 A;  4HE7 A;  2MZ0 A;  2ATB A;  2KPY A;  2LY5 A;  2KSK A;  1SEG A;  1I2U A;  1LQQ A;  2SN3 A;  1B3C A;  1JZB A;  1T0Z A;  1SN4 A;  1OMY A;  1ZVG A;  1B7D A;  1MR4 A;  1LQI A;  1T7B A;  1PTX A;  1I2V A;  1FH3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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