2A7TA

Crystal structure of a novel neurotoxin from buthus tamalus at 2.2a resolution.
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
64
structure length
64
Chain Sequence
GEDGYIADGDNCTYICTFNNYCHALCTDKKGDSGACDWWVPYGVVCWCEDLPTPVPIRGSGKCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
publication title Crystal structure of a highly acidic neurotoxin from scorpion Buthus tamulus at 2.2A resolution reveals novel structural features.
pubmed doi rcsb
molecule keywords Neurotoxin
total genus 14
structure length 64
sequence length 64
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2a7tA00
1VNAA 1P0AA 1TI5A 2KPYA 1BCGA 2LJMA 1I6GA 1SN4A 1OZZA 2SN3A 4HHFA 1JXCA 1ZVEA 1NRAA 2E3FA 1BMRA 1SEGA 1T1TA 1AYJA 2KBJA 1WWNA 2ASCA 2N66A 1PTXA 1LQQA 1WMTA 1P00A 1CN2A 2LY6A 1ICAA 2YC1C 1NRBA 1PX9A 1B3CA 2GL1A 1ZU3A 2LJ7A 2YEOA 1AHOA 1T7BA 2LKBA 1ZUTA 3PSMA 1JZAA 2LY5A 1ZYVA 1C56A 1T7AA 1JZBA 3E7UX 5KK4A 2KGQA 4KYPA 1I6FA 1JKZA 1N4NA 4AEIA 1OMYA 1ZFUA 2LR3A 2A7TA 2N2RA 2B3CA 2N2QA 2I61A 2KSKA 4CQKA 4HE7A 1GPTA 3E7RL 4V1DC 1SNBA 1NE5A 1WT7A 2B68A 4UJ0A 1NH5A 1DQ7A 2LT8A 2NY9X 2YBRC 1ZVGA 1MR4A 1T7EA 2N69A 1LQHA 2E3GA 1VNBA 1T0ZA 1DJTA 1LQIA 1GPSA 1CHZA 2KYQA 1BK8A 1ZYWA 1NPIA 1I2VA 1FH3A 2KBHA 2BRZA 1BRZA 2NY8X 1PE4A 4AB0A 1KV0A 1I2UA 2E0HA 1SN1A 2MZ0A 1C55A 2ATBA 1B7DA 4AAZA 2M8BB 1MYNA 5CY0A 2KBKA 2LI7A 1L4VA 2KJAA
chains in the Genus database with same CATH superfamily
1VNAA 2JDQD 1KAZA 1P0AA 1TI5A 5AQKA 3LDPA 2E8AA 2KPYA 1BCGA 1QQMA 2LJMA 4HWIA 1SN4A 1I6GA 5AR0A 1OZZA 3QFUA 2SN3A 4HHFA 5EY4A 1JXCA 1BA1A 1ZVEA 5F1XA 1NRAA 2E3FA 3LDOA 4H5RA 1BMRA 1SEGA 1T1TA 2QWMA 3R2VA 5AQZA 1NGIA 1AYJA 2KBJA 1WWNA 2QWLA 4UAFE 5AQFA 5FPDA 2ASCA 2N66A 1PTXA 1LQQA 1QQOA 1P00A 1WMTA 2V7ZA 1CN2A 1KAXA 3KVGA 2K35A 5AQYA 2E2FA 2LY6A 3FZHA 1ICAA 2YC1C 1NRBA 3ATUA 3M3ZA 5AQLA 1PX9A 1B3CA 2GL1A 3LDQA 1ZU3A 2LJ7A 4FL9A 5AQIA 2YEOA 3FZFA 5FPMA 2LN8A 5AQNA 1AHOA 1T7BA 1YUWA 2LKBA 5AQPA 5EVZA 1ZUTA 3PSMA 4H5WA 1JZAA 2LY5A 5AQVA 5BPLA 1ZYVA 3I33A 1C56A 1T7AA 1JZBA 3E7UX 2KHOA 1UGLA 3FZLA 1NGJA 2KGQA 4KYPA 3KHWA 2E88A 5KK4A 1I6FA 3KP0A 1JKZA 1N4NA 3QFPA 3L4IA 2QWPA 3GKUA 4UADE 4IO8A 4AEIA 5FPEA 1OMYA 1ZFUA 1NGBA 2LR3A 1NGEA 1XRSB 3C7NB 3GL1A 1NGDA 2A7TA 5AQMA 1KAYA 5AQGA 2N2RA 1NGHA 3KC6A 3FZMA 3CQXA 5EX5A 2B3CA 5BPNA 1NGAA 2N2QA 3D2EB 2QWNA 2I61A 2KSKA 4CQKA 4HE7A 1GPTA 3GDQA 3E7RL 1NGGA 3QI7A 3D2FA 4V1DC 1SNBA 4H5VA 1NE5A 1QQNA 1WT7A 2B68A 3QMLA 3A8YA 5FPNA 4UJ0A 3FE1A 1NH5A 3CW4A 1ATSA 1DQ7A 2LT8A 3HSCA 2NY9X 4UAEF 2YBRC 1ZVGA 3KOYA 1I2VA 1MR4A 3FZKA 5BN8A 2GMOA 1HPMA 2YILA 1T7EA 2N69A 1LQHA 5AQJA 1HX1A 3BK3C 2QWOA 2E3GA 1VNBA 2G2KA 1T0ZA 1DJTA 5AQXA 1NGFA 3KOWA 3L6QA 1K8BA 5AQUA 1LQIA 4KBOA 1GPSA 5AQRA 3ATVA 1CHZA 5EXWA 5AQHA 3D2FB 3KOXA 5AQSA 2KYQA 3KOZA 1BK8A 1NGCA 1S3XA 1NPIA 1ZYWA 1DKGD 2YIOA 3KP1A 2QXLA 1HJOA 4FSVA 5AQQA 1FH3A 2MBKA 2KBHA 5AQOA 2VY6A 2BRZA 5F0XA 4GNIA 1BRZA 1BUPA 2NY8X 1BA0A 1PE4A 4AB0A 2QWQA 3JXUA 3C7NA 4H5NA 1POIA 1KV0A 1I2UA 3LDLA 3IUCA 2E0HA 1SN1A 2QW9A 1ATRA 2MZ0A 3D2EA 3LDNA 1C55A 2ATBA 2QWRA 1B7DA 4AAZA 2M8BB 5AQWA 4H5TA 5F2RA 1MYNA 2D56A 2MN5A 3SF4D 5BPMA 5CY0A 2KBKA 2YIPA 2LI7A 1L4VA 3AY9A 3L56A 2BUPA 5BN9A 2KJAA 5AQTA
chains in the Genus database with same CATH topology
1VNAA 1P0AA 1TI5A 2KPYA 1BCGA 2LJMA 1I6GA 1SN4A 1OZZA 2SN3A 4HHFA 1JXCA 1ZVEA 1NRAA 2E3FA 1BMRA 1SEGA 1T1TA 1AYJA 2KBJA 1WWNA 2ASCA 2N66A 1PTXA 1LQQA 1WMTA 1P00A 1CN2A 2LY6A 1ICAA 2YC1C 1NRBA 1PX9A 1B3CA 2GL1A 1ZU3A 2LJ7A 2YEOA 1AHOA 1T7BA 2LKBA 1ZUTA 3PSMA 1JZAA 2LY5A 1ZYVA 1C56A 1T7AA 1JZBA 3E7UX 5KK4A 2KGQA 4KYPA 1I6FA 1JKZA 1N4NA 4AEIA 1OMYA 1ZFUA 2LR3A 2A7TA 2N2RA 2B3CA 2N2QA 2I61A 2KSKA 4CQKA 4HE7A 1GPTA 3E7RL 4V1DC 1SNBA 1NE5A 1WT7A 2B68A 4UJ0A 1NH5A 1DQ7A 2LT8A 2NY9X 2YBRC 1ZVGA 1MR4A 1T7EA 2N69A 1LQHA 2E3GA 1VNBA 1T0ZA 1DJTA 1LQIA 1GPSA 1CHZA 2KYQA 1BK8A 1ZYWA 1NPIA 1I2VA 1FH3A 2KBHA 2BRZA 1BRZA 2NY8X 1PE4A 4AB0A 1KV0A 1I2UA 2E0HA 1SN1A 2MZ0A 1C55A 2ATBA 1B7DA 4AAZA 2M8BB 1MYNA 5CY0A 2KBKA 2LI7A 1L4VA 2KJAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VNA A;  1P0A A;  1TI5 A;  2KPY A;  1BCG A;  2LJM A;  1I6G A;  1SN4 A;  1OZZ A;  2SN3 A;  4HHF A;  1JXC A;  1ZVE A;  1NRA A;  2E3F A;  1BMR A;  1SEG A;  1T1T A;  1AYJ A;  2KBJ A;  1WWN A;  2ASC A;  2N66 A;  1PTX A;  1LQQ A;  1WMT A;  1P00 A;  1CN2 A;  2LY6 A;  1ICA A;  2YC1 C;  1NRB A;  1PX9 A;  1B3C A;  2GL1 A;  1ZU3 A;  2LJ7 A;  2YEO A;  1AHO A;  1T7B A;  2LKB A;  1ZUT A;  3PSM A;  1JZA A;  2LY5 A;  1ZYV A;  1C56 A;  1T7A A;  1JZB A;  3E7U X;  5KK4 A;  2KGQ A;  4KYP A;  1I6F A;  1JKZ A;  1N4N A;  4AEI A;  1OMY A;  1ZFU A;  2LR3 A;  2A7T A;  2N2R A;  2B3C A;  2N2Q A;  2I61 A;  2KSK A;  4CQK A;  4HE7 A;  1GPT A;  3E7R L;  4V1D C;  1SNB A;  1NE5 A;  1WT7 A;  2B68 A;  4UJ0 A;  1NH5 A;  1DQ7 A;  2LT8 A;  2NY9 X;  2YBR C;  1ZVG A;  1MR4 A;  1T7E A;  2N69 A;  1LQH A;  2E3G A;  1VNB A;  1T0Z A;  1DJT A;  1LQI A;  1GPS A;  1CHZ A;  2KYQ A;  1BK8 A;  1ZYW A;  1NPI A;  1I2V A;  1FH3 A;  2KBH A;  2BRZ A;  1BRZ A;  2NY8 X;  1PE4 A;  4AB0 A;  1KV0 A;  1I2U A;  2E0H A;  1SN1 A;  2MZ0 A;  1C55 A;  2ATB A;  1B7D A;  4AAZ A;  2M8B B;  1MYN A;  5CY0 A;  2KBK A;  2LI7 A;  1L4V A;  2KJA A; 
#chains in the Genus database with same CATH topology
 1VNA A;  2JDQ D;  1KAZ A;  1P0A A;  1TI5 A;  5AQK A;  3LDP A;  2E8A A;  2KPY A;  1BCG A;  1QQM A;  2LJM A;  4HWI A;  1SN4 A;  1I6G A;  5AR0 A;  1OZZ A;  3QFU A;  2SN3 A;  4HHF A;  5EY4 A;  1JXC A;  1BA1 A;  1ZVE A;  5F1X A;  1NRA A;  2E3F A;  3LDO A;  4H5R A;  1BMR A;  1SEG A;  1T1T A;  2QWM A;  3R2V A;  5AQZ A;  1NGI A;  1AYJ A;  2KBJ A;  1WWN A;  2QWL A;  4UAF E;  5AQF A;  5FPD A;  2ASC A;  2N66 A;  1PTX A;  1LQQ A;  1QQO A;  1P00 A;  1WMT A;  2V7Z A;  1CN2 A;  1KAX A;  3KVG A;  2K35 A;  5AQY A;  2E2F A;  2LY6 A;  3FZH A;  1ICA A;  2YC1 C;  1NRB A;  3ATU A;  3M3Z A;  5AQL A;  1PX9 A;  1B3C A;  2GL1 A;  3LDQ A;  1ZU3 A;  2LJ7 A;  4FL9 A;  5AQI A;  2YEO A;  3FZF A;  5FPM A;  2LN8 A;  5AQN A;  1AHO A;  1T7B A;  1YUW A;  2LKB A;  5AQP A;  5EVZ A;  1ZUT A;  3PSM A;  4H5W A;  1JZA A;  2LY5 A;  5AQV A;  5BPL A;  1ZYV A;  3I33 A;  1C56 A;  1T7A A;  1JZB A;  3E7U X;  2KHO A;  1UGL A;  3FZL A;  1NGJ A;  2KGQ A;  4KYP A;  3KHW A;  2E88 A;  5KK4 A;  1I6F A;  3KP0 A;  1JKZ A;  1N4N A;  3QFP A;  3L4I A;  2QWP A;  3GKU A;  4UAD E;  4IO8 A;  4AEI A;  5FPE A;  1OMY A;  1ZFU A;  1NGB A;  2LR3 A;  1NGE A;  1XRS B;  3C7N B;  3GL1 A;  1NGD A;  2A7T A;  5AQM A;  1KAY A;  5AQG A;  2N2R A;  1NGH A;  3KC6 A;  3FZM A;  3CQX A;  5EX5 A;  2B3C A;  5BPN A;  1NGA A;  2N2Q A;  3D2E B;  2QWN A;  2I61 A;  2KSK A;  4CQK A;  4HE7 A;  1GPT A;  3GDQ A;  3E7R L;  1NGG A;  3QI7 A;  3D2F A;  4V1D C;  1SNB A;  4H5V A;  1NE5 A;  1QQN A;  1WT7 A;  2B68 A;  3QML A;  3A8Y A;  5FPN A;  4UJ0 A;  3FE1 A;  1NH5 A;  3CW4 A;  1ATS A;  1DQ7 A;  2LT8 A;  3HSC A;  2NY9 X;  4UAE F;  2YBR C;  1ZVG A;  3KOY A;  1I2V A;  1MR4 A;  3FZK A;  5BN8 A;  2GMO A;  1HPM A;  2YIL A;  1T7E A;  2N69 A;  1LQH A;  5AQJ A;  1HX1 A;  3BK3 C;  2QWO A;  2E3G A;  1VNB A;  2G2K A;  1T0Z A;  1DJT A;  5AQX A;  1NGF A;  3KOW A;  3L6Q A;  1K8B A;  5AQU A;  1LQI A;  4KBO A;  1GPS A;  5AQR A;  3ATV A;  1CHZ A;  5EXW A;  5AQH A;  3D2F B;  3KOX A;  5AQS A;  2KYQ A;  3KOZ A;  1BK8 A;  1NGC A;  1S3X A;  1NPI A;  1ZYW A;  1DKG D;  2YIO A;  3KP1 A;  2QXL A;  1HJO A;  4FSV A;  5AQQ A;  1FH3 A;  2MBK A;  2KBH A;  5AQO A;  2VY6 A;  2BRZ A;  5F0X A;  4GNI A;  1BRZ A;  1BUP A;  2NY8 X;  1BA0 A;  1PE4 A;  4AB0 A;  2QWQ A;  3JXU A;  3C7N A;  4H5N A;  1POI A;  1KV0 A;  1I2U A;  3LDL A;  3IUC A;  2E0H A;  1SN1 A;  2QW9 A;  1ATR A;  2MZ0 A;  3D2E A;  3LDN A;  1C55 A;  2ATB A;  2QWR A;  1B7D A;  4AAZ A;  2M8B B;  5AQW A;  4H5T A;  5F2R A;  1MYN A;  2D56 A;  2MN5 A;  3SF4 D;  5BPM A;  5CY0 A;  2KBK A;  2YIP A;  2LI7 A;  1L4V A;  3AY9 A;  3L56 A;  2BUP A;  5BN9 A;  2KJA A;  5AQT A; 
#chains in the Genus database with same CATH homology
 1VNA A;  1P0A A;  1TI5 A;  2KPY A;  1BCG A;  2LJM A;  1I6G A;  1SN4 A;  1OZZ A;  2SN3 A;  4HHF A;  1JXC A;  1ZVE A;  1NRA A;  2E3F A;  1BMR A;  1SEG A;  1T1T A;  1AYJ A;  2KBJ A;  1WWN A;  2ASC A;  2N66 A;  1PTX A;  1LQQ A;  1WMT A;  1P00 A;  1CN2 A;  2LY6 A;  1ICA A;  2YC1 C;  1NRB A;  1PX9 A;  1B3C A;  2GL1 A;  1ZU3 A;  2LJ7 A;  2YEO A;  1AHO A;  1T7B A;  2LKB A;  1ZUT A;  3PSM A;  1JZA A;  2LY5 A;  1ZYV A;  1C56 A;  1T7A A;  1JZB A;  3E7U X;  5KK4 A;  2KGQ A;  4KYP A;  1I6F A;  1JKZ A;  1N4N A;  4AEI A;  1OMY A;  1ZFU A;  2LR3 A;  2A7T A;  2N2R A;  2B3C A;  2N2Q A;  2I61 A;  2KSK A;  4CQK A;  4HE7 A;  1GPT A;  3E7R L;  4V1D C;  1SNB A;  1NE5 A;  1WT7 A;  2B68 A;  4UJ0 A;  1NH5 A;  1DQ7 A;  2LT8 A;  2NY9 X;  2YBR C;  1ZVG A;  1MR4 A;  1T7E A;  2N69 A;  1LQH A;  2E3G A;  1VNB A;  1T0Z A;  1DJT A;  1LQI A;  1GPS A;  1CHZ A;  2KYQ A;  1BK8 A;  1ZYW A;  1NPI A;  1I2V A;  1FH3 A;  2KBH A;  2BRZ A;  1BRZ A;  2NY8 X;  1PE4 A;  4AB0 A;  1KV0 A;  1I2U A;  2E0H A;  1SN1 A;  2MZ0 A;  1C55 A;  2ATB A;  1B7D A;  4AAZ A;  2M8B B;  1MYN A;  5CY0 A;  2KBK A;  2LI7 A;  1L4V A;  2KJA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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